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Tatumella ptyseos ATCC 33301 contig000032, whole genome shotgun sequence

NCBI Reference Sequence: NZ_ATMJ01000032.1

FASTA Graphics 

LOCUS       NZ_ATMJ01000032        27620 bp    DNA     linear   CON 26-APR-2024
DEFINITION  Tatumella ptyseos ATCC 33301 contig000032, whole genome shotgun
            sequence.
ACCESSION   NZ_ATMJ01000032 NZ_ATMJ01000000
VERSION     NZ_ATMJ01000032.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02199042
            Assembly: GCF_000439895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tatumella ptyseos ATCC 33301
  ORGANISM  Tatumella ptyseos ATCC 33301
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Tatumella.
REFERENCE   1  (bases 1 to 27620)
  AUTHORS   Tracz,D.M., Gilmour,M.W., Bernard,K.A., Mabon,P., Beniac,D.R.,
            Hoang,L., Paccagnella,A., Kibsey,P., Van Domselaar,G.,
            Westmacott,G.R., Tabor,H. and Corbett,C.R.
  TITLE     A comprehensive, polyphasic taxonomic analysis of Tatumella
            saanichensis species novum, a bacterium isolated from a Cystic
            fibrosis patient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 27620)
  AUTHORS   Tracz,D.M., Gilmour,M.W., Bernard,K.A., Mabon,P., Beniac,D.R.,
            Hoang,L., Paccagnella,A., Kibsey,P., Van Domselaar,G.,
            Westmacott,G.R., Tabor,H. and Corbett,C.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2013) Bioforensics Assay Development and
            Diagnostics, National Microbiology Laboratory, 1015 Arlington St.,
            Winnipeg, Manitoba R2E3R2, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ATMJ01000032.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.2.08
            Assembly Name         :: atcc_33301_v1
            Genome Coverage       :: 33.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000439895.1-RS_2024_04_26
            Annotation Date                   :: 04/26/2024 00:55:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,338
            CDSs (total)                      :: 3,253
            Genes (coding)                    :: 3,185
            CDSs (with protein)               :: 3,185
            Genes (RNA)                       :: 85
            rRNAs                             :: 6, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 24 of 68
            Pseudo Genes (incomplete)         :: 58 of 68
            Pseudo Genes (internal stop)      :: 11 of 68
            Pseudo Genes (multiple problems)  :: 20 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27620
                     /organism="Tatumella ptyseos ATCC 33301"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig000032"
                     /strain="ATCC 33301"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /specimen_voucher="ATCC 33301"
                     /culture_collection="ATCC:33301"
                     /type_material="type strain of Tatumella ptyseos"
                     /db_xref="taxon:1005995"
                     /geo_loc_name="USA: Baltimore"
     gene            <1..189
                     /gene="tuf"
                     /locus_tag="DW48_RS18230"
                     /pseudo
     CDS             <1..189
                     /gene="tuf"
                     /locus_tag="DW48_RS18230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147227.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; incomplete; too short partial
                     abutting assembly gap; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
     gene            413..796
                     /gene="secE"
                     /locus_tag="DW48_RS0110160"
     CDS             413..796
                     /gene="secE"
                     /locus_tag="DW48_RS0110160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="WP_025902285.1"
                     /translation="MSANTEAQRSGRGLEIVKWLVVAVLVAVAIYGNYHYRNVNLPLR
                     ALVVVVIIAVAGAIALLTTKGKAAVAFAREARTEVRKVIWPTRQETLQTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            798..1343
                     /gene="nusG"
                     /locus_tag="DW48_RS0110165"
     CDS             798..1343
                     /gene="nusG"
                     /locus_tag="DW48_RS0110165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004953928.1"
                     /GO_process="GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="WP_025902284.1"
                     /translation="MSEAPKKRWYVVQAFSGFESRVAVSLREHIKLHNMEDLFGDVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQAGDKPRPKTMFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFGQVEKG"
     gene            1485..1913
                     /gene="rplK"
                     /locus_tag="DW48_RS0110170"
     CDS             1485..1913
                     /gene="rplK"
                     /locus_tag="DW48_RS0110170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="WP_025902283.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTESLEKGLPTPVVITVYSDRSFTFITKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVT
                     RAQLQEIATTKAADMTGADLDAMTRSIEGTAISMGLVVED"
     gene            1917..2621
                     /gene="rplA"
                     /locus_tag="DW48_RS0110175"
     CDS             1917..2621
                     /gene="rplA"
                     /locus_tag="DW48_RS0110175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004154987.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000311 - plastid large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="WP_025902282.1"
                     /translation="MAKLTKRMRTIRDKVDVTKQYEITEAVALLKELATAKFVESVDV
                     SVNLGIDARKSDQNVRGATVLPNGTGRSVRVAVFAQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTSAKGVYIKKVSLSTTM
                     GAGVAIDQAGLSTQTA"
     gene            2972..3469
                     /gene="rplJ"
                     /locus_tag="DW48_RS0110180"
     CDS             2972..3469
                     /gene="rplJ"
                     /locus_tag="DW48_RS0110180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /GO_component="GO:0015934 - large ribosomal subunit
                     [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="WP_025902281.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRVVEGTPFECLKDTFVGPTLIAYSMEHPGAAARLFKDFAKA
                     NAKFEVKAAAFEGELIPAAQIDRLATLPTYEEALARLMSTMKEAAAGKLVRTLAAVRD
                     AKEAA"
     gene            3533..3898
                     /gene="rplL"
                     /locus_tag="DW48_RS0110185"
     CDS             3533..3898
                     /gene="rplL"
                     /locus_tag="DW48_RS0110185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="WP_025902280.1"
                     /translation="MSITKDQILEAVAAMSVMEVVELVSAMEEKFGVSAAAAVAVAAG
                     PAEAAEEQTEFDVILKSVGGNKVAVIKAVRGATGLGLKEAKDLVESAPAAIKEAISKD
                     DAAALEAALKEAGAEVEIK"
     gene            4230..8258
                     /gene="rpoB"
                     /locus_tag="DW48_RS0110190"
     CDS             4230..8258
                     /gene="rpoB"
                     /locus_tag="DW48_RS0110190"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /GO_component="GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA]"
                     /GO_function="GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="WP_025902279.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QIIDLFFDKVVYEIRDNKLQMALVPERLRGETASFDIESNGTVYVEKGRRITARHIRQ
                     LEKDNVQHIEVPVEYIAGKVVARDYIDESTGELIVAANMELSMDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSE
                     DRYDLSAVGRMKFNRSLLRDEIEGAGILSHDDIIQVMKKLIDIRNGIGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRRVVDSQVTDEIHYLSAIEEGNFVIAQANTNLD
                     DDGRFVDDLVTCRNKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE
                     MYAGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLTEELQILEAGLF
                     TRIYTVLTTGGVEAEKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDELKREFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQDVARLREFIQ
                     RAYDLGTDVRQKVDLNTFSDDQVLRLAENLKKGMPIATPVFDGAKESEIKELLTLGGI
                     PTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8339..12559
                     /gene="rpoC"
                     /locus_tag="DW48_RS0110195"
     CDS             8339..12559
                     /gene="rpoC"
                     /locus_tag="DW48_RS0110195"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121501.1"
                     /GO_component="GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA]"
                     /GO_function="GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="WP_025902278.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQIL
                     TEEQYLDALEEFGDEFDAKMGAEAVQALLKGMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLHLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDKVNAKGEAMVLTGPKEAERVYRAGLAELHARVKVRITEYSKNEQGEFIPH
                     TSLVDTTVGRAILWMIVPKGLPYSIINQALGKKAISKMLNTCYRILGLKPTVIFADQT
                     MYTGFAYAARSGASVGIDDMVIPAKKAEIITEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANERVSKAMMENLQTETVINRHGEEEQQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVLGRVTAEDVLKPGSADI
                     LVARNTLLDEHWCDVLEQNSVDSVKVRSVVGCTTDFGVCAHCYGRDLARGHIINKGEA
                     VGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKLINAKSVTNSAGK
                     LVITSRNVELNMIDEFGRTKESYKVPYGSVMAKGDGEQANAGETVANWDPHTMPVITE
                     VNGYVRFVDMNDGQTITRQTDELTGLSSIVVMDTAERTSGGKDLRPALKVVDANGDDV
                     MLPGTDMPAQYFLPGNAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGERV
                     ERGDVVSDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIASSGSSEFLEGEQAEVSRVMIANRELEANGKVPATFARDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHAGEA
                     PVVPQVTADEASASLAELLNAGLGGNDE"
     gene            12639..13700
                     /locus_tag="DW48_RS0110200"
     CDS             12639..13700
                     /locus_tag="DW48_RS0110200"
                     /inference="COORDINATES: protein motif:HMM:NF018389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="WP_025902277.1"
                     /translation="MKRCCLPAILFSMLVVTFGARASEPVQRMFQDWQVTCNNLNDCD
                     IRNVDENMRVVIRHEAGPRGAVSLDLMGFDIDKPSGIWLDGKLWNNSLTPVYADNKHD
                     YAGYHTTSLQAVQAFAEAAKNAGRIALTPDEDDDTGSLKGLNTSLHFADEIQGRLNNR
                     TAFIRTGNGIPAQVPLRYAFEIPATKIPAIFPVGDGNALINEVLQTQQDVLDDEECSP
                     DADDITRSQVKPLDKKHVLVMINCVTGAYQSSGIVFIVPRAHPDRGSEVELTLPLKDD
                     QGDPQTITWFTDVSYDPKTALLTYIARGHGVSDCGESGTWRYDGHVFQLMSYHNQPTC
                     DGGEPGHWPSVWLTPGFKE"
     gene            complement(13730..14857)
                     /gene="thiH"
                     /locus_tag="DW48_RS0110205"
     CDS             complement(13730..14857)
                     /gene="thiH"
                     /locus_tag="DW48_RS0110205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000847560.1"
                     /GO_function="GO:0016829 - lyase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="WP_029990740.1"
                     /translation="MPDFADYWQTLDQNALRLQIDSQSPADVERALTCHKPGITELMA
                     LLSPAAEQYLEPLAEKALQLTRQRFGNTVNFFAPLYLSNLCANDCTYCGFSMSNRIRR
                     KTLDSREIGLECDALRQLGFNQVLLVTGEHQTKVGMDYFRQHLPDIRRRFSSLMMEVQ
                     PLQEQEYRELHQLGLDGVLVYQETYHASCYATHHLRGNKQDFLFRLQTPERLGRAGID
                     KIGLGVLAGLSGHWRTDCLMMGEHLNWLQKYYWRSRFSVAFPRLRPCAGGITPASQMS
                     ERQLLQTMCAFRLFSPQTDISLSTRESPVFRDHAIPITVTTASAFSKTTPGGYASDTD
                     ALEQFSPDDHRRPEVVAAALQQAGLQPVWKDWEFAFGRESA"
     gene            complement(14850..15638)
                     /locus_tag="DW48_RS0110210"
     CDS             complement(14850..15638)
                     /locus_tag="DW48_RS0110210"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004957757.1"
                     /GO_function="GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="WP_029990742.1"
                     /translation="MLKIADKTFSSRLLTGTGKFASPELMLAALRASGSQLATLAMKR
                     IDFGDNRDAILEPLRRSGVTLLPNTSGAKTAGEAVFAARLAREALGTHWVKLEIHPDS
                     RYLLPDPIETLKAAEQLVREGFTVLPYCGADPVLCKRLAEAGCAAVMPLGAPIGSNRG
                     LLSRDFLHIIIEQATVPVIIDAGIGVPSDACEAMECGADAVLVNTAIATARDPVSAAR
                     AFALATEAGYLCRGQVTTTSTQAKASSPLTAFLDTDNAEAATHA"
     gene            complement(15641..15841)
                     /gene="thiS"
                     /locus_tag="DW48_RS0110215"
     CDS             complement(15641..15841)
                     /gene="thiS"
                     /locus_tag="DW48_RS0110215"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /GO_function="GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="WP_025902274.1"
                     /translation="MQIKVNDNVISVESSCPVNRLLHTLSVAVQGTALAVNERIIPAS
                     EWAGYRLQENDDVVIFQVIAGG"
     gene            complement(15831..16583)
                     /locus_tag="DW48_RS0110220"
     CDS             complement(15831..16583)
                     /locus_tag="DW48_RS0110220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342220.1"
                     /GO_function="GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="WP_025902273.1"
                     /translation="MDDKSFMRYSRQLLLEEIGPEGQQKLSDARILIVGLGGLGSPAA
                     LYLAAAGAGTLLLADDDDLHISNLQRQILYRSSDTGISKAKLAAEALRALNPSITLHA
                     ISDRIPLSAGDELPARPTLVLDCSDNLATRHRLNAWCFSHNLPLITASAIGFHGQLLV
                     LTPPWQHGCYQCLWPDSREPERNCRNSGIAGPVTGVMGSLQALEAIKWICSGRNTAAG
                     QLILFDGLALRWRKLKLTPERNCPICGARHAN"
     gene            complement(16576..17226)
                     /gene="thiE"
                     /locus_tag="DW48_RS0110225"
     CDS             complement(16576..17226)
                     /gene="thiE"
                     /locus_tag="DW48_RS0110225"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224512.1"
                     /GO_function="GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="WP_051170818.1"
                     /translation="MTQIFPPVPRYCGLYAIVDSTEWIENLLNAGVMTLQLRMKQGSA
                     AEKEKAIIDSIRLARGFGARLFINDEWQLAIKHGAYGVHLGQEDLQTASLSAIHQAGL
                     RLGVSTHNTAEIDRVLPLHPSYIALGHIFPTTTKEMPSSPQGLANLRRHVLRLSGIPT
                     VAIGGISLDRAGEVLATGVGSIAVVSAITRAADWRQAVRQLQQKVSDAREVTTDAG"
     gene            complement(17223..19148)
                     /gene="thiC"
                     /locus_tag="DW48_RS0110230"
     CDS             complement(17223..19148)
                     /gene="thiC"
                     /locus_tag="DW48_RS0110230"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008108410.1"
                     /GO_function="GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="WP_029990745.1"
                     /translation="MSEPLSRREKREQAKNFINSLNSEFFPGSERRWITGSRPDIRVP
                     VRAILLSPTRVGGTPDNPVMEENEPIPVYDTSGPFGDNTTVPDIHHGIRKLRQVWIDE
                     RQDSEPLPSTSSSYTRQRLADESLDSLRFQHLPEPRKAKKGRCVTQLHYARQGIITPE
                     MEFIALRENMGREQVTRPELLQQHPGKHFFAPLPASITPEFVRQEVAAGRAIIPANIN
                     HPESEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKLVWATRWGADTLMDLSTGRNIH
                     ETREWILRNSPIPVGTVPIYQALEKVNGVAEDLNWAVFRDTLLEQAEQGVDYFTIHAG
                     VLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYRHFREICEICASYDIALSLG
                     DGLRPGSIQDANDEAQFAELHTLGELTKIAHEYDVQVMIEGPGHVPMHMIQRNMTEQL
                     EHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPDKED
                     VKQGLIAYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFHLALDPETARSYHD
                     QTLPQESGKVAHFCSMCGPKFCSMKISQEVRDFASKNPAPEVVIDEGMLEMSRRFREK
                     GSEIYTPVPAARTGAKA"
     regulatory      complement(19236..19336)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            19574..20347
                     /gene="nudC"
                     /locus_tag="DW48_RS0110235"
     CDS             19574..20347
                     /gene="nudC"
                     /locus_tag="DW48_RS0110235"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004388101.1"
                     /GO_function="GO:0016787 - hydrolase activity [Evidence
                     IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="WP_029990746.1"
                     /translation="MEREITRNDRGWWVISQQNKLWLPQGTLPHGSAAEFALTGSRAL
                     QTGEWQGEPVWLVRETRAQDMMSLRQLLGEESGLFRMAGRAVQLSEFYRSHRYCGYCG
                     AEMHLSRSEFACLCGSCHERYYPQIAPCIIVAIRRQDKILLANHVRSRNGIYTALAGF
                     AEVGETLEQTVAREVMEESNIRIKNLRYVASQPWPFPQSLMMAFLADYDSGELRIDPK
                     ELQDAGWYRYDALPVLPPPGTIARRLIEDTIALCRSENE"
     gene            20432..21496
                     /gene="hemE"
                     /locus_tag="DW48_RS0110240"
     CDS             20432..21496
                     /gene="hemE"
                     /locus_tag="DW48_RS0110240"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460013.1"
                     /GO_function="GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="WP_025902269.1"
                     /translation="MSELKNDRYLRALLRQPTDVTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPRFSSP
                     ITCAADVKKLPVPDPEQELQYVMNAVRTIRKNLKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMMYSDPSTLHAMLDKLAESVILYLNAQIRAGAQSVMVFDTWGGVLTGRD
                     YRDFSLYYMHKIVDGLLHENEGRRVPVTLFTKGGGQWLEQIADTGCDAIGLDWTTEIG
                     NARERVGHRVALQGNMDPSVLYAPPARIEQEVSSILEGFGQGDGHVFNLGHGIHQDVP
                     PEHAGAFVEAVHRLSAAYHK"
     gene            21499..22170
                     /gene="nfi"
                     /locus_tag="DW48_RS0110245"
     CDS             21499..22170
                     /gene="nfi"
                     /locus_tag="DW48_RS0110245"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007886280.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006281 - DNA repair [Evidence IEA]"
                     /note="cleaves DNA at apurinic or apyrimidinic sites;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="WP_025902268.1"
                     /translation="MADFALLKAEQQLLAAQVVREGLSPDFVPRFIAGGDTGFEENGT
                     VARAAIVILHWPSLEMAEHRVARVPVTLPYVPGYLSFRECPALLAAWQQLTHRPELMF
                     IDGHGVAHPRGLGLASHFGVTVDIPVIGVAKRRLCGDYQALSATPGDCQPLMYQQRQT
                     GWVLRSKARCNPLFISAGHRVSDDMALYWTRQCLRGYRLPEPTRLADAVASQRKGFLR
                     YLNRQ"
     gene            22233..22823
                     /locus_tag="DW48_RS0110250"
     CDS             22233..22823
                     /locus_tag="DW48_RS0110250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004206742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="WP_025902267.1"
                     /translation="MLRNPIHLRLEKLESWKHVTFMACLCERMYPNYQAFCQQTEFAD
                     AHIYRRILDLVWETLVVKDAKVNFDSQLEKLEEAIPDGDAFDFYGVYPAIDACVALSE
                     LLHAMLSGESLTYAIQVSETSVTTVAMLEMTQAGREMTDEELRENQAVIDEWDLQWEI
                     FRLLADCEERDLELIKGLRADLREAGISNIGISFNQ"
     gene            23013..23285
                     /gene="hupA"
                     /locus_tag="DW48_RS0110255"
     CDS             23013..23285
                     /gene="hupA"
                     /locus_tag="DW48_RS0110255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein HU-alpha"
                     /protein_id="WP_007886275.1"
                     /translation="MNKTQLIDVIAEKADLSKTQAKTALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            23463..24125
                     /locus_tag="DW48_RS0110260"
     CDS             23463..24125
                     /locus_tag="DW48_RS0110260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003850138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="WP_025902266.1"
                     /translation="MMFSSGRGLLLCLALLLVGCQSAKNMPAFSASGYLSDRGVVRIW
                     RKNMPPDITIRTLYTPFDRTVTEQTDYHWQNGQLLMMKRHISGTSPDDVTLRFDNQGN
                     VSFMQRQLARQRESVSLQDIDLYRFDAGRLLQISNGLQAGRVTLMQGVWDGSNRVTTC
                     QHQTVSAGLDAYSVQMIYREQRQSAGAPVYIAWLRAPEGVQLLKATTENLCLQAPASA
                     DL"
     gene            complement(24201..25484)
                     /gene="purD"
                     /locus_tag="DW48_RS0110265"
     CDS             complement(24201..25484)
                     /gene="purD"
                     /locus_tag="DW48_RS0110265"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012882987.1"
                     /GO_function="GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA]"
                     /GO_process="GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]; GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="WP_029990749.1"
                     /translation="MNILIIGNGGREHALAWKAAQSPLAGKVYVAPGNAGTALEPALH
                     NVDISATDIEGLLAFALKENIGLTIVGPEAPLVIGVVDAFREAGLKIFGPTRGAAQLE
                     GSKAFTKDFLARHNIPTAEYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVQDMLAGNAFGDAGHRIVIEEFLQGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDADTGPNTGGMGAYSPAPVVTDEVHQRAMDEVIWPTVRGMAAEGNVYTGFLYAGLMI
                     DPEGRPKVIEFNCRFGDPETQPIMLRLQSDLVALCLAACDGQLDQQESHWDPRPALGV
                     VLAAGGYPGKYRKGDVISGLDAATSPDGKVFHAGTTLQGEDVVTHGGRVLCATGLGTD
                     IAAAQKQAYALAKAISWEGSFCRTDIGYRAINRQK"
     gene            complement(25504..27093)
                     /gene="purH"
                     /locus_tag="DW48_RS0110270"
     CDS             complement(25504..27093)
                     /gene="purH"
                     /locus_tag="DW48_RS0110270"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /GO_function="GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA]; GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA]"
                     /GO_process="GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="WP_029990751.1"
                     /translation="MQQRRPVRRALLSVSDKTGIVEFAKALTSRGVELLSTGGTARLL
                     ADAGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAVMAEHQIDPIDMVV
                     VNLYPFAETVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSHDYPALIREL
                     EENDNSLTLETRFDLAIKAFEHTAAYDSMIANYFGQRVPAYYSEDKTPAGRFPRTLNL
                     NFVKKQDMRYGENSHQDAAFYIEENIKEASVATAQQLQGKALSYNNIADTDAALECVK
                     EFPEPACVIVKHANPCGVAIGEDIKQAYERAYTTDPTSAFGGIIAFNRELDEATAQAI
                     ISRQFVEVIIAPSASEAALKITAAKQNVRVLTCGEWQQRESGLDFKRVNGGLLVQDRD
                     LGMVSEAQLRVVSQRQPTAQEMRDALFCWKVAKFVKSNAIVYARDNMTIGIGAGQMSR
                     VYSAKIAGIKAGDEGLEVKGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEV
                     IAAADEHGIAMIFTDMRHFRH"
CONTIG      join(ATMJ01000032.1:1..27620)
//
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