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Paraburkholderia sp. J10-1 96, whole genome shotgun sequence

NCBI Reference Sequence: NZ_CAJMYW010000096.1

FASTA Graphics 

LOCUS       NZ_CAJMYW010000096       260 bp    DNA     linear   CON 15-DEC-2023
DEFINITION  Paraburkholderia sp. J10-1 96, whole genome shotgun sequence.
ACCESSION   NZ_CAJMYW010000096 NZ_CAJMYW010000000
VERSION     NZ_CAJMYW010000096.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7887107
            Assembly: GCF_905220165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Paraburkholderia sp. J10-1
  ORGANISM  Paraburkholderia sp. J10-1
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Paraburkholderia.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Webster,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2021) CARDIFF UNIVERSITY, Biosciences, Cardiff
            University, Cardiff School of Biosciences, Museum Avenue, Cardiff,
            Wales, CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJMYW010000096.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/15/2023 00:29:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,177
            CDSs (total)                      :: 8,112
            Genes (coding)                    :: 7,985
            CDSs (with protein)               :: 7,985
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 20 of 127
            Pseudo Genes (incomplete)         :: 114 of 127
            Pseudo Genes (internal stop)      :: 16 of 127
            Pseudo Genes (multiple problems)  :: 21 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Paraburkholderia sp. J10-1"
                     /mol_type="genomic DNA"
                     /isolate="J10-1"
                     /isolation_source="Plant roots"
                     /db_xref="taxon:2805430"
                     /note="contig: 96"
     gene            <1..>260
                     /locus_tag="U5A65_RS40875"
                     /pseudo
     CDS             <1..>260
                     /locus_tag="U5A65_RS40875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343433.1"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
CONTIG      join(CAJMYW010000096.1:1..260)
//
Feature
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