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NCBI Reference Sequence: NZ_CAJMYW010000096.1
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LOCUS NZ_CAJMYW010000096 260 bp DNA linear CON 15-DEC-2023 DEFINITION Paraburkholderia sp. J10-1 96, whole genome shotgun sequence. ACCESSION NZ_CAJMYW010000096 NZ_CAJMYW010000000 VERSION NZ_CAJMYW010000096.1 DBLINK BioProject: PRJNA224116 BioSample: SAMEA7887107 Assembly: GCF_905220165.1 KEYWORDS WGS; RefSeq. SOURCE Paraburkholderia sp. J10-1 ORGANISM Paraburkholderia sp. J10-1 Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia. REFERENCE 1 (bases 1 to 260) AUTHORS Webster,G. TITLE Direct Submission JOURNAL Submitted (01-FEB-2021) CARDIFF UNIVERSITY, Biosciences, Cardiff University, Cardiff School of Biosciences, Museum Avenue, Cardiff, Wales, CF10 3AX, United Kingdom COMMENT REFSEQ INFORMATION: The reference sequence is identical to CAJMYW010000096.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/15/2023 00:29:31 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 8,177 CDSs (total) :: 8,112 Genes (coding) :: 7,985 CDSs (with protein) :: 7,985 Genes (RNA) :: 65 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 4 Pseudo Genes (total) :: 127 CDSs (without protein) :: 127 Pseudo Genes (ambiguous residues) :: 0 of 127 Pseudo Genes (frameshifted) :: 20 of 127 Pseudo Genes (incomplete) :: 114 of 127 Pseudo Genes (internal stop) :: 16 of 127 Pseudo Genes (multiple problems) :: 21 of 127 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..260 /organism="Paraburkholderia sp. J10-1" /mol_type="genomic DNA" /isolate="J10-1" /isolation_source="Plant roots" /db_xref="taxon:2805430" /note="contig: 96" gene <1..>260 /locus_tag="U5A65_RS40875" /pseudo CDS <1..>260 /locus_tag="U5A65_RS40875" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013343433.1" /note="incomplete; too short partial abutting assembly gap; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=2 /transl_table=11 /product="LysR family transcriptional regulator" CONTIG join(CAJMYW010000096.1:1..260) //
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