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Pseudoalteromonas sp. PA2MD11 NODE_48_length_603_cov_1845.488593, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JADKNF010000048.1

FASTA Graphics 

LOCUS       NZ_JADKNF010000048       603 bp    DNA     linear   CON 16-JAN-2024
DEFINITION  Pseudoalteromonas sp. PA2MD11 NODE_48_length_603_cov_1845.488593,
            whole genome shotgun sequence.
ACCESSION   NZ_JADKNF010000048 NZ_JADKNF010000000
VERSION     NZ_JADKNF010000048.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16655686
            Assembly: GCF_017808125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudoalteromonas sp. PA2MD11
  ORGANISM  Pseudoalteromonas sp. PA2MD11
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   de Oliveira,B.F.R., Lopes,I.R., Canellas,A.L.B., Muricy,G.,
            Jackson,S.A., Dobson,A.D.W. and Laport,M.S.
  TITLE     Genomic and in silico protein structural analyses provide insights
            into marine polysaccharide-degrading enzymes in the sponge-derived
            Pseudoalteromonas sp. PA2MD11
  JOURNAL   Int J Biol Macromol 191, 973-995 (2021)
   PUBMED   34555402
REFERENCE   2  (bases 1 to 603)
  AUTHORS   De Oliveira,B.F.R., Lopes,I.R., Canellas,A.L.B., Muricy,G.,
            Jackson,S.A., Dobson,A.D.W. and Laport,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-NOV-2020) Institute of Microbiology Paulo de Goes,
            Federal University of Rio de Janeiro, Carlos Chagas Filho Avenue,
            Rio de Janeiro, Rio de Janeiro 21941902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADKNF010000048.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-SEP-2019
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 346.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/16/2024 05:54:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,108
            CDSs (total)                      :: 4,041
            Genes (coding)                    :: 4,010
            CDSs (with protein)               :: 4,010
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 3 (5S, 16S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 8 of 31
            Pseudo Genes (incomplete)         :: 18 of 31
            Pseudo Genes (internal stop)      :: 7 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pseudoalteromonas sp. PA2MD11"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_48_length_603_cov_1845.488593"
                     /strain="PA2MD11"
                     /host="Plakina sp. 2 CCPH-2017"
                     /db_xref="taxon:2785057"
                     /geo_loc_name="Brazil: Rio de Janeiro"
                     /collection_date="2017-05"
     gene            <1..265
                     /locus_tag="ISP07_RS20450"
     rRNA            <1..265
                     /locus_tag="ISP07_RS20450"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
CONTIG      join(JADKNF010000048.1:1..603)
//
Feature
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