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NCBI Reference Sequence: NZ_JADKNF010000048.1
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LOCUS NZ_JADKNF010000048 603 bp DNA linear CON 16-JAN-2024 DEFINITION Pseudoalteromonas sp. PA2MD11 NODE_48_length_603_cov_1845.488593, whole genome shotgun sequence. ACCESSION NZ_JADKNF010000048 NZ_JADKNF010000000 VERSION NZ_JADKNF010000048.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN16655686 Assembly: GCF_017808125.1 KEYWORDS WGS; RefSeq. SOURCE Pseudoalteromonas sp. PA2MD11 ORGANISM Pseudoalteromonas sp. PA2MD11 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas. REFERENCE 1 (bases 1 to 603) AUTHORS de Oliveira,B.F.R., Lopes,I.R., Canellas,A.L.B., Muricy,G., Jackson,S.A., Dobson,A.D.W. and Laport,M.S. TITLE Genomic and in silico protein structural analyses provide insights into marine polysaccharide-degrading enzymes in the sponge-derived Pseudoalteromonas sp. PA2MD11 JOURNAL Int J Biol Macromol 191, 973-995 (2021) PUBMED 34555402 REFERENCE 2 (bases 1 to 603) AUTHORS De Oliveira,B.F.R., Lopes,I.R., Canellas,A.L.B., Muricy,G., Jackson,S.A., Dobson,A.D.W. and Laport,M.S. TITLE Direct Submission JOURNAL Submitted (04-NOV-2020) Institute of Microbiology Paulo de Goes, Federal University of Rio de Janeiro, Carlos Chagas Filho Avenue, Rio de Janeiro, Rio de Janeiro 21941902, Brazil COMMENT REFSEQ INFORMATION: The reference sequence is identical to JADKNF010000048.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 01-SEP-2019 Assembly Method :: SPAdes v. 3.12 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 346.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 05:54:24 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,108 CDSs (total) :: 4,041 Genes (coding) :: 4,010 CDSs (with protein) :: 4,010 Genes (RNA) :: 67 rRNAs :: 2, 3, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 23S) partial rRNAs :: 1, 3 (5S, 16S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 31 CDSs (without protein) :: 31 Pseudo Genes (ambiguous residues) :: 0 of 31 Pseudo Genes (frameshifted) :: 8 of 31 Pseudo Genes (incomplete) :: 18 of 31 Pseudo Genes (internal stop) :: 7 of 31 Pseudo Genes (multiple problems) :: 2 of 31 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..603 /organism="Pseudoalteromonas sp. PA2MD11" /mol_type="genomic DNA" /submitter_seqid="NODE_48_length_603_cov_1845.488593" /strain="PA2MD11" /host="Plakina sp. 2 CCPH-2017" /db_xref="taxon:2785057" /geo_loc_name="Brazil: Rio de Janeiro" /collection_date="2017-05" gene <1..265 /locus_tag="ISP07_RS20450" rRNA <1..265 /locus_tag="ISP07_RS20450" /product="16S ribosomal RNA" /inference="COORDINATES: nucleotide motif:Rfam:14.4:RF00177" /inference="COORDINATES: profile:INFERNAL:1.1.4" /note="Derived by automated computational analysis using gene prediction method: cmsearch." /db_xref="RFAM:RF00177" CONTIG join(JADKNF010000048.1:1..603) //
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