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Bacillus tropicus strain HD-957 HD-0957_S7_contig_0000365, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JARSTO010000365.1

FASTA Graphics 

LOCUS       NZ_JARSTO010000365      6231 bp    DNA     linear   CON 17-JAN-2025
DEFINITION  Bacillus tropicus strain HD-957 HD-0957_S7_contig_0000365, whole
            genome shotgun sequence.
ACCESSION   NZ_JARSTO010000365 NZ_JARSTO010000000
VERSION     NZ_JARSTO010000365.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33940934
            Assembly: GCF_035814815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus tropicus
  ORGANISM  Bacillus tropicus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae;
            Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6231)
  AUTHORS   Dunlap,C.
  TITLE     Bacillus Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6231)
  AUTHORS   Dunlap,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2023) CBP, USDA-ARS-NCAUR, 1815 N. University
            St., Peoria, IL 61604, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARSTO010000365.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 21
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32.98700900838167x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035814815.1-RS_2025_01_17
            Annotation Date                   :: 01/17/2025 04:46:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,721
            CDSs (total)                      :: 5,626
            Genes (coding)                    :: 5,171
            CDSs (with protein)               :: 5,171
            Genes (RNA)                       :: 95
            rRNAs                             :: 8, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 455
            CDSs (without protein)            :: 455
            Pseudo Genes (ambiguous residues) :: 0 of 455
            Pseudo Genes (frameshifted)       :: 79 of 455
            Pseudo Genes (incomplete)         :: 343 of 455
            Pseudo Genes (internal stop)      :: 73 of 455
            Pseudo Genes (multiple problems)  :: 38 of 455
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6231
                     /organism="Bacillus tropicus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="HD-0957_S7_contig_0000365"
                     /strain="HD-957"
                     /isolation_source="insect Choristoneura fumiferana"
                     /db_xref="taxon:2026188"
                     /collection_date="1986-07-25"
     gene            <1..1449
                     /locus_tag="P9W85_RS24625"
                     /old_locus_tag="P9W85_24575"
     CDS             <1..1449
                     /locus_tag="P9W85_RS24625"
                     /old_locus_tag="P9W85_24575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000834772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="WP_326275932.1"
                     /translation="SSENRDSFGTGKLLTIVTNDITSIQSAMTMTLRVLVRGPLLFIG
                     SIIIVFVTARELFPILLVVVPILLLAIIFIASKASGTFRKVQEALDKVNTKLQENLSG
                     VRVIKAYVRQKYEINQFGNVNTNLTKINIRAVQLISIMMPIIMLVVSGGIVATLWIGG
                     EKVFNGTLQVGAILAFINYLNIILMSLMSISMVFMQIARAFPSADRVQQVLNTEVDIM
                     TSKNALAPKQIEGQIDFKNVSYSYTKNNEYVLKDISFRICKGEKIGIIGSTGSGKSTL
                     AKLIPRLYDVDQGEICIDGINIKAYDLQKLRASIGFVPQKALLFSGSIEENLRYGKED
                     ASNDELEVAASSACATEFINKLEDSYQYHLTQGATNLSGGQKQRVSIARALVRKPSIL
                     ILDDSTSAVDAKSESNIQSALRTEYKGTTTLLIASKISSIIDADKILVLDNGELVGDG
                     THEELLEHCEVYKEIYLSQGGYLHKEGGKEHA"
     gene            1442..3238
                     /locus_tag="P9W85_RS24630"
                     /old_locus_tag="P9W85_24580"
     CDS             1442..3238
                     /locus_tag="P9W85_RS24630"
                     /old_locus_tag="P9W85_24580"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001243553.1"
                     /GO_component="GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA]"
                     /GO_function="GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA];
                     GO:0042626 - ATPase-coupled transmembrane transporter
                     activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="WP_042515153.1"
                     /translation="MRNFQGQFANKGGRNATKMGKAKNTKGTVMRVWNYMGYQKAALT
                     FVIFLVFVTTLLGLLGPYLMGVIIDQYIVPKDLSGTARMCLLLIAIYGVTVFLTWLQT
                     FVMVNVALKTIQKIRQDIFEKIQTLSLRFFDVRSQGDLMSRVTNDIDNLNQALTQSVV
                     QIISSALTFIGVTIAMFALDWILAIVTLITVPIMFFVTKKLVAYSGKNFAKRQKDLGE
                     LNGFIEEAITGADVTTLYGKEKETVQNFNKINEQLRVSATKADTFSAFIFPSMNFINN
                     LGMGLVIGTGSVMVLNGMTTVGVIAAFINYSRQFSRPLSQFATLMNTIQAAVAGGERV
                     FEIMDEVPEIKNKKDAFVVQNLQGHVALENVSFGYEENKTILKEVSLKARPGETIALV
                     GPTGSGKTTIINLLTRFYDIQQGQIHIDGKNIKEYDINSLRGKIGVVLQDTYLFAGTI
                     MDNIRYGRLDASDEEVINAAKAASAHSFIKHLPNQYETKIASEGSNLSQGQKQLLAIA
                     RAILADADILILDEATSNIDTRTELQIQEGLNNLMRGRTSFVIAHRLKTIEKADQILV
                     IKDGSIIEKGNHESLMEDRGFYFDLYTSQFKI"
     gene            complement(3345..3605)
                     /locus_tag="P9W85_RS24635"
                     /old_locus_tag="P9W85_24585"
     CDS             complement(3345..3605)
                     /locus_tag="P9W85_RS24635"
                     /old_locus_tag="P9W85_24585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000774129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000774132.1"
                     /translation="MADKYKLLILIVTAFFSFFSLIKDFRNTSKSFFWGSFAILTSFI
                     LLLTHALELTPILLYSAQMTLEIITIPRKLFLPSGTEVASIC"
     gene            3857..4594
                     /locus_tag="P9W85_RS24640"
                     /old_locus_tag="P9W85_24590"
     CDS             3857..4594
                     /locus_tag="P9W85_RS24640"
                     /old_locus_tag="P9W85_24590"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016087888.1"
                     /GO_function="GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA]"
                     /GO_process="GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="WP_000135270.1"
                     /translation="MARYSLHAGHNSIVQGANYGNRKEHIMDRQVKDAVVAKLRALGH
                     TVYDDTDEVGTTQAQNLNNIVSKTNSHDVDLVVSFHLNSYDTKANGVEVLYYDQQALS
                     AKIAAQLSKDIGWSNRGAKERKDLYVLANTKAPAILIELGFIDNEADMAKWNPDKIAN
                     SIVYALTGQSGGTTPPSKKNIIQSGAFSPYETPDVMGALTSLKMTANFILQSDGLTYF
                     ISEPTSDAQLKGMTDYLDRRGWWYEVK"
     gene            complement(4805..5389)
                     /locus_tag="P9W85_RS24645"
                     /old_locus_tag="P9W85_24595"
     CDS             complement(4805..5389)
                     /locus_tag="P9W85_RS24645"
                     /old_locus_tag="P9W85_24595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016077744.1"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_process="GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="WP_001121293.1"
                     /translation="MPIFSFLLFVFISSFTPGPNNFLAMTYANQHGLKRSMQFCFGVA
                     FGFFILTSLCSFFNIVLINILPIIEFPLKIFGVVYMLYLAFKILTSKASTDPDEKYNK
                     NLFTVGIFLQFVNPKGILFGLTVVSTFILPYYNSYSSYLLFSLFLGVVGLMSTFSWSL
                     FGSMFQKLLLKHTKSFNIIMAVLLVFSAISIVIN"
     gene            5445..6059
                     /locus_tag="P9W85_RS24650"
                     /old_locus_tag="P9W85_24600"
     CDS             5445..6059
                     /locus_tag="P9W85_RS24650"
                     /old_locus_tag="P9W85_24600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002021358.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003700 - DNA-binding transcription factor activity
                     [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_002021358.1"
                     /translation="MLFIVHYGRYVVYILGVFLMEEIQLILAKNLKTIREKEKLSLEK
                     VSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVVLRNDVQ
                     VLSEDNGRYKVYPSFPFQDDRNFEIYTVEIETEGKLNSEGHKEGTEEFITVFEGELTI
                     EINDCQYKLNSGDSIRFKADRPHSYRNFGRTQTRLNMTIYYSTS"
CONTIG      join(JARSTO010000365.1:1..6231)
//
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