Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_JARSTO010000365.1
FASTA Graphics
LOCUS NZ_JARSTO010000365 6231 bp DNA linear CON 17-JAN-2025 DEFINITION Bacillus tropicus strain HD-957 HD-0957_S7_contig_0000365, whole genome shotgun sequence. ACCESSION NZ_JARSTO010000365 NZ_JARSTO010000000 VERSION NZ_JARSTO010000365.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN33940934 Assembly: GCF_035814815.1 KEYWORDS WGS; RefSeq. SOURCE Bacillus tropicus ORGANISM Bacillus tropicus Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. REFERENCE 1 (bases 1 to 6231) AUTHORS Dunlap,C. TITLE Bacillus Genome Sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 6231) AUTHORS Dunlap,C. TITLE Direct Submission JOURNAL Submitted (30-MAR-2023) CBP, USDA-ARS-NCAUR, 1815 N. University St., Peoria, IL 61604, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JARSTO010000365.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: CLC NGS Cell v. 21 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.98700900838167x Sequencing Technology :: Illumina NovaSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_035814815.1-RS_2025_01_17 Annotation Date :: 01/17/2025 04:46:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,721 CDSs (total) :: 5,626 Genes (coding) :: 5,171 CDSs (with protein) :: 5,171 Genes (RNA) :: 95 rRNAs :: 8, 3, 4 (5S, 16S, 23S) complete rRNAs :: 7, 1 (5S, 16S) partial rRNAs :: 1, 2, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 5 Pseudo Genes (total) :: 455 CDSs (without protein) :: 455 Pseudo Genes (ambiguous residues) :: 0 of 455 Pseudo Genes (frameshifted) :: 79 of 455 Pseudo Genes (incomplete) :: 343 of 455 Pseudo Genes (internal stop) :: 73 of 455 Pseudo Genes (multiple problems) :: 38 of 455 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6231 /organism="Bacillus tropicus" /mol_type="genomic DNA" /submitter_seqid="HD-0957_S7_contig_0000365" /strain="HD-957" /isolation_source="insect Choristoneura fumiferana" /db_xref="taxon:2026188" /collection_date="1986-07-25" gene <1..1449 /locus_tag="P9W85_RS24625" /old_locus_tag="P9W85_24575" CDS <1..1449 /locus_tag="P9W85_RS24625" /old_locus_tag="P9W85_24575" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000834772.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="WP_326275932.1" /translation="SSENRDSFGTGKLLTIVTNDITSIQSAMTMTLRVLVRGPLLFIG SIIIVFVTARELFPILLVVVPILLLAIIFIASKASGTFRKVQEALDKVNTKLQENLSG VRVIKAYVRQKYEINQFGNVNTNLTKINIRAVQLISIMMPIIMLVVSGGIVATLWIGG EKVFNGTLQVGAILAFINYLNIILMSLMSISMVFMQIARAFPSADRVQQVLNTEVDIM TSKNALAPKQIEGQIDFKNVSYSYTKNNEYVLKDISFRICKGEKIGIIGSTGSGKSTL AKLIPRLYDVDQGEICIDGINIKAYDLQKLRASIGFVPQKALLFSGSIEENLRYGKED ASNDELEVAASSACATEFINKLEDSYQYHLTQGATNLSGGQKQRVSIARALVRKPSIL ILDDSTSAVDAKSESNIQSALRTEYKGTTTLLIASKISSIIDADKILVLDNGELVGDG THEELLEHCEVYKEIYLSQGGYLHKEGGKEHA" gene 1442..3238 /locus_tag="P9W85_RS24630" /old_locus_tag="P9W85_24580" CDS 1442..3238 /locus_tag="P9W85_RS24630" /old_locus_tag="P9W85_24580" /EC_number="7.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001243553.1" /GO_component="GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]" /GO_function="GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="WP_042515153.1" /translation="MRNFQGQFANKGGRNATKMGKAKNTKGTVMRVWNYMGYQKAALT FVIFLVFVTTLLGLLGPYLMGVIIDQYIVPKDLSGTARMCLLLIAIYGVTVFLTWLQT FVMVNVALKTIQKIRQDIFEKIQTLSLRFFDVRSQGDLMSRVTNDIDNLNQALTQSVV QIISSALTFIGVTIAMFALDWILAIVTLITVPIMFFVTKKLVAYSGKNFAKRQKDLGE LNGFIEEAITGADVTTLYGKEKETVQNFNKINEQLRVSATKADTFSAFIFPSMNFINN LGMGLVIGTGSVMVLNGMTTVGVIAAFINYSRQFSRPLSQFATLMNTIQAAVAGGERV FEIMDEVPEIKNKKDAFVVQNLQGHVALENVSFGYEENKTILKEVSLKARPGETIALV GPTGSGKTTIINLLTRFYDIQQGQIHIDGKNIKEYDINSLRGKIGVVLQDTYLFAGTI MDNIRYGRLDASDEEVINAAKAASAHSFIKHLPNQYETKIASEGSNLSQGQKQLLAIA RAILADADILILDEATSNIDTRTELQIQEGLNNLMRGRTSFVIAHRLKTIEKADQILV IKDGSIIEKGNHESLMEDRGFYFDLYTSQFKI" gene complement(3345..3605) /locus_tag="P9W85_RS24635" /old_locus_tag="P9W85_24585" CDS complement(3345..3605) /locus_tag="P9W85_RS24635" /old_locus_tag="P9W85_24585" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000774129.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000774132.1" /translation="MADKYKLLILIVTAFFSFFSLIKDFRNTSKSFFWGSFAILTSFI LLLTHALELTPILLYSAQMTLEIITIPRKLFLPSGTEVASIC" gene 3857..4594 /locus_tag="P9W85_RS24640" /old_locus_tag="P9W85_24590" CDS 3857..4594 /locus_tag="P9W85_RS24640" /old_locus_tag="P9W85_24590" /EC_number="3.5.1.28" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016087888.1" /GO_function="GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]" /GO_process="GO:0009253 - peptidoglycan catabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="WP_000135270.1" /translation="MARYSLHAGHNSIVQGANYGNRKEHIMDRQVKDAVVAKLRALGH TVYDDTDEVGTTQAQNLNNIVSKTNSHDVDLVVSFHLNSYDTKANGVEVLYYDQQALS AKIAAQLSKDIGWSNRGAKERKDLYVLANTKAPAILIELGFIDNEADMAKWNPDKIAN SIVYALTGQSGGTTPPSKKNIIQSGAFSPYETPDVMGALTSLKMTANFILQSDGLTYF ISEPTSDAQLKGMTDYLDRRGWWYEVK" gene complement(4805..5389) /locus_tag="P9W85_RS24645" /old_locus_tag="P9W85_24595" CDS complement(4805..5389) /locus_tag="P9W85_RS24645" /old_locus_tag="P9W85_24595" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016077744.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_process="GO:0006865 - amino acid transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysE family transporter" /protein_id="WP_001121293.1" /translation="MPIFSFLLFVFISSFTPGPNNFLAMTYANQHGLKRSMQFCFGVA FGFFILTSLCSFFNIVLINILPIIEFPLKIFGVVYMLYLAFKILTSKASTDPDEKYNK NLFTVGIFLQFVNPKGILFGLTVVSTFILPYYNSYSSYLLFSLFLGVVGLMSTFSWSL FGSMFQKLLLKHTKSFNIIMAVLLVFSAISIVIN" gene 5445..6059 /locus_tag="P9W85_RS24650" /old_locus_tag="P9W85_24600" CDS 5445..6059 /locus_tag="P9W85_RS24650" /old_locus_tag="P9W85_24600" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002021358.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002021358.1" /translation="MLFIVHYGRYVVYILGVFLMEEIQLILAKNLKTIREKEKLSLEK VSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVVLRNDVQ VLSEDNGRYKVYPSFPFQDDRNFEIYTVEIETEGKLNSEGHKEGTEEFITVFEGELTI EINDCQYKLNSGDSIRFKADRPHSYRNFGRTQTRLNMTIYYSTS" CONTIG join(JARSTO010000365.1:1..6231) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on