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NCBI Reference Sequence: NZ_JBCOJH010000015.1
FASTA Graphics
LOCUS NZ_JBCOJH010000015 65059 bp DNA linear CON 29-JUL-2024 DEFINITION Enterococcus faecium strain RTP21230st1_A12_RTP21230_210325 NODE_15_length_65059_cov_18.549214, whole genome shotgun sequence. ACCESSION NZ_JBCOJH010000015 NZ_JBCOJH010000000 VERSION NZ_JBCOJH010000015.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN41035200 Assembly: GCF_040925805.1 KEYWORDS WGS; RefSeq. SOURCE Enterococcus faecium ORGANISM Enterococcus faecium Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus. REFERENCE 1 (bases 1 to 65059) AUTHORS Chen-Liaw,A., Mogno,I., Li,Z. and Faith,J. TITLE Gut microbiota bacterial strain richness is species specific and limits therapeutic engraftment JOURNAL Unpublished REFERENCE 2 (bases 1 to 65059) AUTHORS Chen-Liaw,A., Li,Z., Mogno,I. and Faith,J. TITLE Direct Submission JOURNAL Submitted (22-APR-2024) Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, Box 1498, New York, NY 10029, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JBCOJH010000015.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. v3.14.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 17.2x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_040925805.1-RS_2024_07_28 Annotation Date :: 07/28/2024 14:35:20 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,883 CDSs (total) :: 2,822 Genes (coding) :: 2,732 CDSs (with protein) :: 2,732 Genes (RNA) :: 61 rRNAs :: 1, 1 (16S, 23S) partial rRNAs :: 1, 1 (16S, 23S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 90 CDSs (without protein) :: 90 Pseudo Genes (ambiguous residues) :: 0 of 90 Pseudo Genes (frameshifted) :: 32 of 90 Pseudo Genes (incomplete) :: 51 of 90 Pseudo Genes (internal stop) :: 22 of 90 Pseudo Genes (multiple problems) :: 15 of 90 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..65059 /organism="Enterococcus faecium" /mol_type="genomic DNA" /submitter_seqid="NODE_15_length_65059_cov_18.549214" /strain="RTP21230st1_A12_RTP21230_210325" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:1352" /geo_loc_name="USA: New York" /lat_lon="40.7128 N 74.0060 W" /collection_date="2021-03-25" gene complement(<1..1394) /locus_tag="AB5755_RS10605" CDS complement(<1..1394) /locus_tag="AB5755_RS10605" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016632045.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="vWA domain-containing protein" /protein_id="WP_368263133.1" /translation="MKKRNYFIVFCLFSLFFVTYFHFQKGETVAANEESTIEVLNNEY GKVSIRKIDHQLTILYRLNAQTQETRFLFQLHSKDAPETNLLSSYVSQEYQEYTDEQQ RKWLAGYFSQTIEEKEWTIELPSTSKEFQLNIQIEEKTGQLLLSEPVSFSFSIDNKNQ ETAQTNEKTSETSTSYENHEISDDSSLDKDEYRPFEQPQLFNAQLKPKGLATIEPEYT TDEQGTYPKAMWQPDNSQYVRNHQGNRQGQQQWDGLNGWDGNPTNRNNSYIEYGGEKE DADYAIRKFAKETATPGLFDVYLNARGNVQKDITPLDLVLVVDWSGSMNDNDRIGEVK IGVDRFVDTLADSGITDKINMGYVGYSSEGHNYSNGTVQMGSFDSVKNQVKSITPSWT NGGTFTQKGLRDAGDMLSVPNGHKKVIVLLTDGVPTFSYKVQRVRAQSSNDYYGTQFS NTQDQPGNTSRIAR" gene 1749..3245 /locus_tag="AB5755_RS10610" CDS 1749..3245 /locus_tag="AB5755_RS10610" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002313382.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002334939.1" /translation="MIEKILLDDHARMKLSVYGKVMTLRPGEYSLDHVRENLDFYFSA TRFKKILCDIQDDLEQFTDIKLLHNKNKLSIPEQLVQYTQYQHYLSTESVPYKLLISL LTEQDENLAAFCNRQFISRSTCFRQIKKLAEYLKEYNINLNLSNLTLSGSEMLIRIIF FNFFWFVSLGESLDSIPYSQEVRALIYKHEGSQHKNKFDLGKKQASLHCLICLLRIEN NHFTDIYRLSRDSFIPSETNIDFFYDFFKIANLRLDILEVNSLFYLFYYWPLLTSNQD IRVPIVHHSYEQPSNEVKDILEEFQKHCQTFIGTLQFEKEPALLLNLYLSIGNFSMFK QKIPLTTLFISSYIKDKYPLLRILTIKIEGFWKKIAQRKNYTWLKSCVSELAFLQTSL LYPYYSEIDENYKLKVGFVNVSEHLISEEILNLGKKIPFVDIELLTLPITEEYDFFIF GSPLLIPAGLDSSKYTVLDFCHYSDFETDLYQRLLEVHHLKLQNLFSN" gene complement(3855..4163) /locus_tag="AB5755_RS10615" CDS complement(3855..4163) /locus_tag="AB5755_RS10615" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="DNA methyltransferase" /protein_id="WP_226072222.1" /translation="MTAINNLDKSMRSLWYSILNYPNKFINLINKTIVNIEEWPRQKE ICKKEFNHPFALEEGFATFFLNITNVSGITSGGQIEGTKQESKYKVGCCFNKQSLIKK " gene complement(4924..5202) /locus_tag="AB5755_RS10620" CDS complement(4924..5202) /locus_tag="AB5755_RS10620" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002333412.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002314576.1" /translation="MGYVTIGYTIFSTGYTENPIKRNHLKVYKTLLDKAYEFVFSEHF RFLENYDLPSSLDVGIELYDGVEKKNLKLNLSKDYSKNSPVLRELEMQ" gene complement(5278..5523) /locus_tag="AB5755_RS10625" CDS complement(5278..5523) /locus_tag="AB5755_RS10625" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002317972.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002313380.1" /translation="MLFLKEEKIIDRENVIGSNIRRFRVEKGIGQTELVRDLQLRKIA ITRETLVKIESGRQHIKLDQLRAIRDVLQVSYEDLLQ" gene 5628..6401 /locus_tag="AB5755_RS10630" /pseudo CDS 5628..6401 /locus_tag="AB5755_RS10630" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002368756.1" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" gene complement(6454..6768) /locus_tag="AB5755_RS10635" CDS complement(6454..6768) /locus_tag="AB5755_RS10635" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002329547.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002313378.1" /translation="MSDENKVVPLETLVINKEEFEQLFLDFFVQYDRIYDFSSSLDLF ELEAEIIENSQEEDGNIIISVEKFLELFSEIFEIDTDYYQPQEVFREFRNQIIRSGKT VN" gene complement(8330..8548) /locus_tag="AB5755_RS10640" CDS complement(8330..8548) /locus_tag="AB5755_RS10640" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002316493.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002334941.1" /translation="MQLILQLSTHDFLELDELCESVKNATNEKITVTNYIELMIQDEL KMKREIKNNFKYCYLEKSEEKIHELNGF" gene complement(8562..11134) /locus_tag="AB5755_RS10645" /pseudo CDS complement(8562..11134) /locus_tag="AB5755_RS10645" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002320200.1" /note="frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="pLS20_p028 family conjugation system transmembrane protein" gene complement(11131..11340) /locus_tag="AB5755_RS10650" CDS complement(11131..11340) /locus_tag="AB5755_RS10650" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002331644.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002313375.1" /translation="MIKNRLIDQIWCLDQNTDTLELIESICFNTVVLDLRAENDNCVT HVIINQKMAQQLSESLRKWAEGEKL" gene complement(11337..12134) /locus_tag="AB5755_RS10655" CDS complement(11337..12134) /locus_tag="AB5755_RS10655" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002334944.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002334944.1" /translation="MSDEQKIQRNYYAIIPANVRYDRDLIPSSKLLYGEITALCNEKG FCWAKTQYFQDLYGVSRVSIQKWLKSLEANGYISREVIYKENSKEVDKRVIRIVNTPD KEKLATPLTKVNTPSKEKLTENNTSNNTINEEEDINIKEIYTKVSVLYEENNDDGRKL LQVYHYLKNANVYIDDIRKIIEFLYENTQYLNAQCIITQHKACVFQAKTDEGLFDYAK FFLNGLQIRYKNQLLENIETTDQFNKAFGIKELPKIPMHNWLEGEKT" gene complement(12291..12593) /locus_tag="AB5755_RS10660" CDS complement(12291..12593) /locus_tag="AB5755_RS10660" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002295175.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002313373.1" /translation="MEAIKLMISEEQEEMFLKQFYQIATKAIEKAQENAGMTREYLNQ KEMAEYLNVSENFLKNAVRNEGLPVVELGARKFYSKKAVNEFMFARMKRGESFERR" gene 12790..13587 /locus_tag="AB5755_RS10665" CDS 12790..13587 /locus_tag="AB5755_RS10665" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010734642.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002295173.1" /translation="MKPNLSLTSERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRG VSLPNKNRLLTIANIGNTSADWIKWGTLEEYIASYLIDSGYELYIKDFPEIPHKVFND IQERYSDTFSLDKDYELLNPIIKNIFSKYYSKDFEIYLNEILANDINPLIEEYASQKH SISKELFFKRANSRLQDKIRNGDFKYGEKEILIDSSKQLLNEMDLAYQDISQYSSVED FFYKITKNQFETEKFISDLSKKYNFPYEKNSIVAKFLTNNHDKFKSN" gene 13638..14780 /locus_tag="AB5755_RS10670" CDS 13638..14780 /locus_tag="AB5755_RS10670" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002301896.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tyrosine-type recombinase/integrase" /protein_id="WP_002295169.1" /translation="MATFFSYKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAE AQIALNRLLVDFKEKQEFKINVTTFQELYELWIDNYRTRVKPSSVAVAQRFCKNHILP AFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTL LPRKIEEEQPLKFYTKDQLQLFLKNTKENNSVKLYTFFRLLAYTGMRKSEALALQWED IDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQITPHGFRHTHCSLLF ESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRFAKFMGE" gene complement(15741..18890) /locus_tag="AB5755_RS10675" CDS complement(15741..18890) /locus_tag="AB5755_RS10675" /EC_number="3.1.21.3" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002334404.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type I restriction endonuclease subunit R" /protein_id="WP_368241611.1" /translation="MKISHREEAEVEEQLIRVLGEGHNQWTYRPDLKSEEDLWVNLRQ KIISNNQAELNDSPLTDKEFETIKTELLLRTKTPFDAAKWLKGENGMARITIEREDSQ LGSVSLILYSNQDIGGGISTYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELK QVTAKDGVYQAFNQIKKYAEEGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKF LFSWRTKDNEKVENLYEFCKQVLNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAI QALFIAANKHQSGYVWHATGSGKTLTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTT EFTKFASEFNTGISSGNAKANSLIVGTGSAKELSETLLADANANVVIITTRQKLDAAL KYAKKQEEKKGTNRFQKLMGQHIVFVVDECHRALSAENMEEIKKMFPKSTWFGFTGTP IFPENRKQAKGQLARTTHDQYGEVLHTYTIKNALEDGSVLGFQVEHENTVEPTSLENK IYRKLKEVETYAEYSSEQINHMIDQMEPVKKESYLDPAVFEADEHIQKVIHKMFRPDN AYTKFDFRNGRPTKSAILTTSSIDMAKKYYRAIKEMTKEPDWLTKEFPDQPIREGRTM EDPDFPRIAITYSLEENNQDSSAQQEEMKKIIEEYNQYFDTAWSLADIERYNGDINNR LARKRAEFKQFGKQIDLVIVVDRLLTGFDAPTIQTLFVDRNLEYAGLIQAFSRTNRTY PEKKKGLIVTFRKPATMEKNVEDATKLYSEAKEESGLIYPSYQESKKRFKQAYGKLKE VSSMESIDEHTPLEIRIEYVKAFQELNRAYESLVTYDDYNDDMVKSPTLNNQIQLLEE QIGVYETVKGSLIEEEPEKEGEDFSTIEFYSENTTKLYDIDSTYIDQLLGTYAANSSD AREEIEKALAKLNKTEGVKEVYRQILNAFDVGTLDSNEDIFVIKRRYFTQASDDLIHA FSNEWFVSEKELHASNLQYLPGEDRIPNMKAIINSKDYEGYKAKHPEAKPFKYTQEMK RAWRKMLDDELIPLENELR" gene complement(18903..20144) /locus_tag="AB5755_RS10680" CDS complement(18903..20144) /locus_tag="AB5755_RS10680" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002339094.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="restriction endonuclease subunit S" /protein_id="WP_368241613.1" /translation="MSNDTQPEIRFPGFMEDWEERKLRELLDLLKDGTHGTHSDVEEG VYLLSAKNIKNGIVNIDSATDRKISKQEFASIHKNFNLEKGDVLLTIVGSIGESAIIE NPEGITFQRSVAYLRPNKMLSSLFLYNNINGSKFQAELKKRQVISAQPGIYLGDLAVI PIKLPTLTEQIKIGAFFSVLNKTIALHQRKLDLLKETKKGFLQKMFPKNGAKVPEIRF PGFTEDWEQRKLGEVSPLRGGFAFKSNKFVKEGIPIVRISNILSNGSVGGEFVYYTAQ EKDENYLLPDKSALLAMSGATTGKVSILNNPNNNKVYQNQRVGYFTKTKNVDYSFIST LVRSKIFLDQLNSVLVAGAQPNISSKDINVFELTIPKNIEEQKKIGNFFKQLDDTITL HQRKLDLLKEMKKGFLQKMFV" gene complement(20134..21729) /locus_tag="AB5755_RS10685" CDS complement(20134..21729) /locus_tag="AB5755_RS10685" /EC_number="2.1.1.72" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002343106.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]" /GO_process="GO:0009307 - DNA restriction-modification system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type I restriction-modification system subunit M" /protein_id="WP_368241615.1" /translation="MGAELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLE QVVLLADESLEEYDTVSKQTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLA DQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKK LNDVEVLGHDGDVIGDAYEFLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERR FFSVFDPTMGSGSLMLNVRNYLTHPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEMN LRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSRFNRYRKLAPKSKADF AFLLHGFYHLKETGTMAIVLPHGVLFRGAAEGVIRQKLLEDGSIYAVIGMPANLFFGT SIPTTVIVLKKNRQTRDVLFIDASREFVKGKNQNKLSEGNIQKVLETYAERKDVEKYA HLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAIS SLQTTSENEAWLQGALEVFKHEQ" gene complement(22222..23073) /locus_tag="AB5755_RS10690" CDS complement(22222..23073) /locus_tag="AB5755_RS10690" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002334407.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002324256.1" /translation="MKKNVLVILSIFTIFSLSACGDSTNMTSIGVEYKEIPKDIRNSW VEGRKNVKREDYYGKWYFFEKVGNDTVEITIIINKKFIKDVYSGVEVPYKYNNKTNEI IVELRGLKKFLNDDKIISGNLSLTYVNNNDGESINGIANPTKSGDDKPTPLFMNYKRI DKVTKEEKTSTLSEDNETEIDTEQTMDERIDSFIETYTAIPPTWKLVNEDKGITINTD TDISTDAQSLSDLLANLTGISNAVTEQVGKDIPLRLLENGKKDYSVVFKNGQVTDYNE VFKKVIE" gene complement(23580..23906) /locus_tag="AB5755_RS10695" CDS complement(23580..23906) /locus_tag="AB5755_RS10695" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002334408.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002324257.1" /translation="MNKVNMNKKFVIIGIVVLAIIGIIFSKMTGTSGLEKSSKPLVTQ ILQEQYNLNRTCDDVTITHDNGDNTYRAKATLDNGSAININVEYYPKKDRIYVEIPYT EVLMLN" gene complement(23952..24314) /locus_tag="AB5755_RS10700" CDS complement(23952..24314) /locus_tag="AB5755_RS10700" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010717431.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="zinc ribbon domain-containing protein" /protein_id="WP_002324258.1" /translation="MYCRKCGKEITDESKYCQFCGALQETDETTGADAVKKSTEQTIN EMKEQIVHGQETGKLYLIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEKMGTILM IAGVAGAIFGVLLGMSMY" gene complement(24351..24566) /locus_tag="AB5755_RS10705" CDS complement(24351..24566) /locus_tag="AB5755_RS10705" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002324259.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="WP_002324259.1" /translation="MKKISNLSRYRKEKGLSQTELAKKMNVTQQCISSWQTGRTIPKP YQMKMLSEILSVPINELFSDVFNKVNS" gene 24695..25030 /locus_tag="AB5755_RS10710" CDS 24695..25030 /locus_tag="AB5755_RS10710" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002328543.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002354523.1" /translation="MKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTE PNLDSLTALSRALGTPVSHFLDNVVVDYEEEFLALYRSLSTEDAVRTIDYMKLLKRQE NERNQLLKD" gene complement(25106..27103) /locus_tag="AB5755_RS10715" CDS complement(25106..27103) /locus_tag="AB5755_RS10715" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002331149.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_368241619.1" /translation="METSMINIPIYVDKEKLLEKPVTKKEKTDVRDRCLDNYREVTRD EFVEILNSSQSFIPSKTKNKGNDKESFVETRVIILDVDNTVKDEKGKVVDLSKDDSRY LSIEKVLSINLVHNSAFAIQKSIRYSENLEKYKIVFLLKEAITDYGKMVAVYEYLKKN IPGCDDNVNASNRMFFGGYKSDAVIIINEDNMLDITELPIDFTMTCSKNCQSDSGREY ELVNETDFVKLIKNDDKEEMKQWFKDCLFDSSDMSFNEIHERLLTIDMNKLLKSSKNL RCLFHNDHNPSASIFTSKTGHSIFYCHSSNCDISENFIGVVMLILKKDSRVETFNWLL ENLDLYPTHFRKLKEESKVLFDTLESMKDKLFRTIRNYLEEMRRVYDVLLSDVNFFDD SKESVTCILSGEQLAKKMSFYYGKTYDIDKCNKLLSLMTFIGLIKKLDDEDVPLKMLE YLNRLKEEKALGNFNHKRSNVYRLDVFNATSVIQKLNEDILPLLEKFHFTYQYFSYEW VKICFNEKEAKRVFPQNSRSELSKEKQLILDEAHEVLQGLSWQGTYIMTEKELTNTVC ERLRNVGNNSVENALKENRGYFVKQGFTLERASKDIKRLYNVKASSSFLVYLAKGAGI DEVIKELILSGVELVPLYQFTSVTRDDGRRVRKRKDPIVLN" gene complement(27201..27476) /locus_tag="AB5755_RS10720" CDS complement(27201..27476) /locus_tag="AB5755_RS10720" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010738381.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_002287723.1" /translation="MSLQIIDSIVSIQVEQQVKEIITVLKPMLEDIISGVTLEYMDYQ QASEYLGVSVGTIRKYVSQYGLPVIKIDTVIRFKKSDIDSFMERYKG" gene 27708..28442 /locus_tag="AB5755_RS10725" CDS 27708..28442 /locus_tag="AB5755_RS10725" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002301918.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="WP_002301918.1" /translation="MIKRPPINYLERKKILGTKIKAIRKSKKLTQPAFGLMINNGQLI DKKTIYEWEKGTYLPIPERLSRIADLGNMSIEELVCGNVEEYILGIILYRDSIVLDGI TFPDKNLFQHLRQQFPPVHSNLDTWLDRYSKLEPEMQEFIANKTCNKVKIEKISLFNI LKIEELFINAIIEEFDNNILFLTSSIEELLERMVDEWLPIQLKDMSYPEEAVREITDN INKLEQTISSIGKKYTKKKMKGGDTI" gene 28481..29623 /locus_tag="AB5755_RS10730" CDS 28481..29623 /locus_tag="AB5755_RS10730" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002301919.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tyrosine-type recombinase/integrase" /protein_id="WP_002301919.1" /translation="MAKISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQE AQKDYDEYRHQILYGVKKKAPDMTFEDLYNEWIAHQRTSVKASTIAISVRYANNQILP AFGKLKLSNISVPYCQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTL LPRKKEYEKNRKFYSKEELNDLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKD IDTFNKELHVNKTLAVDEFGNVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYL KLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLE AGESVKVVQQRLGHENSKVTLDIYAHITNNAPKKTGQDFADMMAHQ" gene complement(29719..31110) /gene="sufB" /locus_tag="AB5755_RS10735" CDS complement(29719..31110) /gene="sufB" /locus_tag="AB5755_RS10735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016623216.1" /GO_process="GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly protein SufB" /protein_id="WP_368241624.1" /translation="MGVPELEEYKFGFHDDVEPVFSTGEGLTEEVIREMSRIKGEPEW MLEFRLKSLETFNKMPMQTWGPDLSDIDFDAIKYYQKPSDKPARDWEDVPEKIKDTFE KIGIPEAERAYLAGASAQYESEVVYHNMKDEFEKLGIVFTDTDSALKEYPELFKEYFS KLVPPTDNKLAALNSAVWSGGTFVYVPKGVKVDVPLQTYFRINAENTGQFERTLIIVD EGASIHYVEGCTAPTYSSNSLHAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKA YEGATVEWIDGNLGAKTTMKYPSVYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAP NTSSSIVSKSISKDGGEVNYRGQVTFAKNSAGSISHIECDTIIMDEWSKSDTIPFNEI HNSQVSLEHEAKVSKISEEQLYYLMSRGLTESEATEMIVMGFVEPFTKELPMEYAVEL NRLISYEMEGSVG" gene complement(31115..31585) /gene="sufU" /locus_tag="AB5755_RS10740" CDS complement(31115..31585) /gene="sufU" /locus_tag="AB5755_RS10740" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016632039.1" /GO_function="GO:0005198 - structural molecule activity [Evidence IEA]" /GO_process="GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly sulfur transfer protein SufU" /protein_id="WP_002308248.1" /translation="MGLSKLDNLYRQVILDHSSHPHHRGSLTDSTSKIELNNPTCGDV IELQVDVKDGIIKNIAFDGSGCSISTASASMMTDAVIGKSIEEAEHLTVDFLQLVQGK EVQDPDQLGDAAMLGGVAKFPARIKCATLAWKALGKAMENDGTAAFHHYHKEEE" gene complement(31572..32807) /locus_tag="AB5755_RS10745" CDS complement(31572..32807) /locus_tag="AB5755_RS10745" /EC_number="2.8.1.7" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016632038.1" /GO_function="GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]" /GO_process="GO:0006534 - cysteine metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="WP_002312075.1" /translation="MIDAKKLRNDFPILFQDVNDEPFVYLDNAATTQKPKQVLQALAH YYEHDNANVHRGVHTLAERATHEYEQAREKVRAFIHAKETAEVLFTRGTTTSLNWVAR SFGDRYIKAGDEIVISYMEHHSNVIPWQQLAKRTGAVLKYIELTEEGFLDMEDAAKKI TDKTKIVSIAHVSNVLGVINPVQELAELVHENGGVIVVDGAQSAPHMAIDVQALDCDF FAFSGHKMCGPTGIGVLYGKRKWLEEMEPVEFGGEMIDFVELYDSTWKELPWKFEAGT PNIAGAIALGHAIDYLQELGMDNIHRYEEELAAYVLPKLQAIDGLTVYGPQDPKFRTG VVAFNLDGLHPHDVATALDMEGVAVRAGHHCAQPLLKYLEVSATARASFYFYNTTHDA DRLVEAIMATKEFFQHGTI" gene complement(32804..34090) /gene="sufD" /locus_tag="AB5755_RS10750" CDS complement(32804..34090) /gene="sufD" /locus_tag="AB5755_RS10750" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016171125.1" /GO_process="GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly protein SufD" /protein_id="WP_002308246.1" /translation="MKEKNWLDYLDAVNDFSLSKGEPDWMRTFRQDALTKADELPLPH IDRVKFHRWSLFDVKETQTISETGTIPAFDAMKDNPVLVQQGSWTIFEQLPVELAEKG VIFTDLFTAMIEYPELVQEYYMKKAVNLDEDQLTALHVAFMNSGIFLYVPKNVVIDEP LESLFIQDGASDEHFFKHVLIVADEHSEFSYLERFQTTKEQVAKSSGNIIVEVIAKAG SKIKYSAVDQLGENITSYMNRRGHILRDASVDWAIGVMNDGHVIADFDSDLAGEGAHA EVKIVAISSGRQIQGIDTRVTNKAPHTIGHILQHGVIREKGTLTFNGIGHILKGAKGA DAQQESRVLMLSDKARGDANPILLIDENEVTAGHAASVGRVDPEEMYYLMSRGLHKEE AERLVIRGFLGSVLTAIPVEQVRKELVEVIEGKLNG" gene complement(34103..34876) /gene="sufC" /locus_tag="AB5755_RS10755" CDS complement(34103..34876) /gene="sufC" /locus_tag="AB5755_RS10755" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005879209.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /GO_process="GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly ATPase SufC" /protein_id="WP_002287679.1" /translation="MSVLEIKNLHVSIEEKEILKGVNLTMKTGEIHAIMGPNGTGKST LSAAIMGNPNYEVTEGEILFDGKNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMR AAINAKRDENDKISVMAFLKKLDEKMALLNMPEEMAERYLNEGFSGGEKKRNEILQLL MLEPTFAILDEIDSGLDIDALKVVAKGVNEMRGDNFGALIITHYQRLLNYITPDVVHI MMEGRVVMTGNADLAKRLEAEGYAGISKELGIDYKEEEA" gene complement(35073..35921) /locus_tag="AB5755_RS10760" CDS complement(35073..35921) /locus_tag="AB5755_RS10760" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002287678.1" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /GO_function="GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MetQ/NlpA family ABC transporter substrate-binding protein" /protein_id="WP_002308245.1" /translation="MKKKIFGLAAALLLTVGLTACGNNSDSKDSANKADDTILKVGAS PTPHAEILEHVKPLLKDEGIDLEIVKFDDYVLPNQSLEEGDIDANYFQHIPYLNKEIK EKGYDFVNAGAVHIEPMGLYSKKIKDVSELKDGATIITSNSESDWGRIITILQDAGLV KVKDGVDLETATFDDIAENPKNLKFNHTIDPSLLASTYQNDEGDLVAINANFAYGAGL NPLEDAVLLEKDNSPYVNIIATRKGDEDSDKIKKLIEVLHRKEVQEWITDKWGGSVKP VKADAK" gene complement(35945..36631) /locus_tag="AB5755_RS10765" CDS complement(35945..36631) /locus_tag="AB5755_RS10765" /EC_number="7.4.2.11" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016623210.1" /GO_function="GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0048473 - D-methionine transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="methionine ABC transporter permease" /protein_id="WP_002287674.1" /translation="MDKSFSETYLDFKQINPETMNQAILDTLYMTLISMVLVTIIGLV LGLILYSIGRKNKPYARIIYGIVSIISNIFRSTPFMILMVLIIPFTKAIVGTMLGAQA AIPALVLSAAPFYARLVEIAFREVSPGVLEAADAMGASYWEIIWKVLIPESIPALISG LTVTTISMIGFTAMAGAIGAGGLGGLAWQEGYQRGNLTVTFVATLIILLIVFIVQGIG DFLTKKTDKR" gene complement(36624..37658) /locus_tag="AB5755_RS10770" CDS complement(36624..37658) /locus_tag="AB5755_RS10770" /EC_number="7.4.2.11" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010738389.1" /GO_function="GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0048473 - D-methionine transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="methionine ABC transporter ATP-binding protein" /protein_id="WP_002304234.1" /translation="MSLIQLTNVKKTFNGKNGNIQAVNDVSLNVEKGDIYGIVGYSGA GKSTLVRLLNGLELPTSGEVIVNDQDITKLKNKELRTFRKKIGMIFQHFNLLWSRTVL ENIQLPLELAGVPKSKRKERAEELLRLVGLEGRGQAYPSQLSGGQKQRVGIARALAND PEILLCDEATSALDPQTTEEVLDLLLAINKKLNLTIVLITHEMNVIRKICNKVAVMEL GKVVEEGDVLTVFRQPKKEVTKRFVQQDIEPEADSTELLAELIKENPSGRLATLTFSE RNANEPVISQAIRRYNIDVNVVYGKIKQVKEGSFGSLTVLMTGETKELDQAEVFIKEQ GVGIEVIHRG" misc_binding complement(37721..37977) /inference="COORDINATES: nucleotide motif:Rfam:14.4:RF00230" /inference="COORDINATES: profile:INFERNAL:1.1.5" /note="T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch." /bound_moiety="tRNA" /db_xref="RFAM:RF00230" gene complement(38053..38391) /locus_tag="AB5755_RS10775" CDS complement(38053..38391) /locus_tag="AB5755_RS10775" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002375559.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycine cleavage system protein H" /protein_id="WP_002291179.1" /translation="MAGKHLKKKDNLWILFNGKEYCVGLTNEAQEELGDITFANLPKA GQSLKKDEPLIEVEAEKAVNEFASPLTGTVSSVNDKIGEDINILNDSDEMNAWILSFK DVDPKEFDEL" gene complement(38393..38749) /locus_tag="AB5755_RS10780" CDS complement(38393..38749) /locus_tag="AB5755_RS10780" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002325873.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="arsenate reductase family protein" /protein_id="WP_368241633.1" /translation="MYTFYWYPKCSTCKKAKAWLDRHGVSYQTVDMIKEVPKASTIET WLETSQVPIRRLFNTSGMKYRELGLKDQVGEFTASKASQVLSTDGMLIKRPLIVQEDQ LVAIGFNEKIYEGELI" gene complement(38755..39942) /locus_tag="AB5755_RS10785" CDS complement(38755..39942) /locus_tag="AB5755_RS10785" /EC_number="2.4.99.28" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002344548.1" /GO_process="GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FtsW/RodA/SpoVE family cell cycle protein" /protein_id="WP_002308242.1" /translation="MEKKLKASNDNRIDYGVILPVFLLCLIGLLSLYVALSHDPNNPA VLKGVGMQVVWYLVGAAAIVVIMHLNSKWIWKLTPYLYGLGLVVMGLLLEFYDKNLAD STGSKNWFRFGAFTFQPAELMKIAYILMMALIVTKHNTQVKERTMKSDFWLIGKLLIV TIPVLALIMAQDDFGTMLVFLAIFGGIFLMSGISWRIIAPVVILAVVVGAGTIFLVTT EGGRDLLYKVGFKSYQFARIDSWLDPFHDTSGMSYQPAQGLLAIGTGGLFGKGFNVSN IYVPVRESDMIFTVIGENFGFIGGAFVIFLYFILIYRMIRVCFDTNNEFYAYIASGLI MMLLFHVFENIGANIGLLPLTGIPLPFISQGGSSILGNMIGVGLILSMRYQNEAPARS SRR" gene complement(40136..40978) /locus_tag="AB5755_RS10790" CDS complement(40136..40978) /locus_tag="AB5755_RS10790" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002314564.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="WP_002308240.1" /translation="MFKLLTTFRAVYETRNFSRAAEVLFLSQPAVSNQIKQLERELNI DLFQRNGRKEMLPTKQADLLYERTLVLLEEWEETQQKLLNEQNEEEVCRIVASHTFAV YLLPQLMKHLIKRFPKVHFEIEIANSHESLEQVAKHESDFGFIEKPLETSGVQRYSLM EDQLVIAGDPKSKLWLVREANSGVFHYTQRYFEEMNIQDKKMIVKSNDVIVALLKEGI GRSILSERSVPKDVPMIPLNFHRYFYFIQRTNLVSDQLLEIAEEILRYNESTETSHSE ENLS" gene 41209..42177 /locus_tag="AB5755_RS10795" CDS 41209..42177 /locus_tag="AB5755_RS10795" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002312068.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TDT family transporter" /protein_id="WP_368241636.1" /translation="MKNFLKIIPIPICGLILGLASLGNLFKDYHHVALGNLTGGISMI LMIFIFVKLFILFDHTKQTLHDPIIASVSPTFTMSLMVICTYFVSYESIAPIVKFIWL CAVIFQVILVFYFNYHHVIKADLSIEAIYPSWFIIYVGFGVITVTAGNFFPLIGKIFF WISLVCYAFLLPIIIKRVFFVRNMAHPIRPLITIVAAPGSLCLTGYLKNFAEPNFYLV VALFVLSQVLYFVVLSILPRLFKLRFYPSYAAFTFPLVISATALFTTVHYFNSLGIYS SVLDFLKIAECLFASVVVFYVLAHYVRFLTKEHSKHGKFVSKKIAS" gene 42551..43591 /locus_tag="AB5755_RS10800" CDS 42551..43591 /locus_tag="AB5755_RS10800" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002375726.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YeiH family protein" /protein_id="WP_368241638.1" /translation="MKSLSHPIKSVKDSAVREILPGLLLSFAIAAVSRLLAIYLPQLG GATIAILLGILLGNTFFKQPVLAIGTKFAESKLLEFSVFLLGATVTAQTIAQIGVKGI VFVLLQMSVTIIGAYLIGKKLQFSDTSSLMMAGGNAVCGSSAIASIAPSIHAKEEEKG QIITLVNLLGTMMMLTLPFLGLQLFGGNLIEKSALLGGTLQSVGQVVAGASLLDSSVV EFAMLFKILRIMMLVVVYLFEKFMHKKQPALFETPTDTQKKRKLPLPWYVLGFVIFCL VNSLFSLPVVIDQSAHFISSWFEITALAAIGLRLDFAKFMKEGTRFLSYGLAVGLLQT VMALLFIWLIKL" gene complement(43654..44118) /locus_tag="AB5755_RS10805" CDS complement(43654..44118) /locus_tag="AB5755_RS10805" /EC_number="2.1.1.63" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002337876.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="methylated-DNA--[protein]-cysteine S-methyltransferase" /protein_id="WP_002308236.1" /translation="MKIHTPIGFLWLDADESGLTAVSFQPISESKSANQQILTRTQEQ FEEYFTGKRKEFEIPLSIKRGTPFQQNVWKALSTIPYGEIRTYKEVAVAVASPKAVRA IGQANRTNPLPIVIPCHRVIGQNGKLTGYMGNATDGVEIKRQLLLLEGYLQN" gene 44364..45311 /locus_tag="AB5755_RS10810" CDS 44364..45311 /locus_tag="AB5755_RS10810" /EC_number="2.4.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002289773.1" /GO_function="GO:0016757 - glycosyltransferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycosyltransferase family 2 protein" /protein_id="WP_002308234.1" /translation="MKVSIVVPCFNEEKTVPLFFDEVEKFKGPHEFEYLFIDDGSKDG TLAAIKKLAAAYPYVRFVSFSRNFGKEAALYAGLQASTGDLVTVMDVDLQDPPELLPE MIERITTSDIDCVGTRRSTREGEPAIRSFFAKKFYQLINKISDTEMVDGARDFRLMTR QMVDAVLELTEYNRFSKGLFSWVGFKTEYISYENRERVAGETSWSFWKLFNYSIDGIV NFSDAPLTIASFIGALSCVGSGIAILFIILRALLFGDPTSGWPSMVSIFLFIGGIQLL CLGIIGKYIGKIFLETKQRPVYIIRETEKVKPNELKPHQ" gene complement(45647..47719) /locus_tag="AB5755_RS10815" CDS complement(45647..47719) /locus_tag="AB5755_RS10815" /EC_number="5.6.2.1" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002317775.1" /GO_function="GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]; GO:0098847 - sequence-specific single stranded DNA binding [Evidence IEA]" /GO_process="GO:0051304 - chromosome separation [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]; GO:0006261 - DNA-templated DNA replication [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="WP_002308233.1" /translation="MKQLILAEKPSVAKDLSKVLGANQKHKNYYEGPKVIVTWALGHL LGLKMPEDLNKEWQSWQMDTLPMIPKKLGIKPLPKTGYQLKAIKQLAQRKDVSEAVIA TDAGREGELVARWILEYVHFNKPVKRLWISSQTDKAIKTGFKQLRPAKEYDALYESAL ARAKADWLVGLNVTRALTVKYADNLSAGRVQTPTLALVRDQEKKIEQFRPQTYFTITL HAGKEQAKMVQKNQFALKTQEEAQKLVQLISTSKGTVTEVQEKLKTESAPLPYDLTEI QREANQRYGYSAKKTLSLVQSLYETHKIVTYPRTDSKYLTNDMKSTMNERLQAVSDFA PEVKQYLKNGAIVQQTKVFQDNKVTDHHALLPTENRARYEKLSNEEQKIYQMIVSRFL GLFAQPHKVSQTKVTVEFDKEQFIFRQNRVIQAGWKGETESETETVKWEKGMRINPDF TIKKELSAPPKPLTEASLLGQMEKYSLGTPATRAEIIEKLIKSELMERTPQGLQVSPK GKQLLVLVNPSLVTPDLTESWEKDLEAIAAGKKQAGTFLNGIEKETKRLVNEIKSSKQ EYQDFSITQKKCPECGANLREKNTRDGKIYVCTNSDCNYRRRKDPKVSNHRCPQCHRK MEIIEGKNGAYFRCKYDGTTEKMLDKKEQKKKMTKHEERRLLKKYAQAEEPEESPLAA ALKAAMKK" gene complement(47652..48029) /locus_tag="AB5755_RS10820" CDS complement(47652..48029) /locus_tag="AB5755_RS10820" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002312065.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1033 family protein" /protein_id="WP_002308231.1" /translation="MYQVITMFGDNEPWWFFEDWEEDIEAEETFESFEEARQAYEKQW IAIHQNYEYINAKRNFLSAFWNDGDERWCEECDDDLQQYKGLALLKNHQPITVESRKE FYETTNSSGKTKRCERPKQGAWC" gene complement(48158..48718) /locus_tag="AB5755_RS10825" CDS complement(48158..48718) /locus_tag="AB5755_RS10825" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002327414.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TetR/AcrR family transcriptional regulator" /protein_id="WP_025478071.1" /translation="MKKRNLSQEKIIDCFRELAEEMDVQQITFQHLAKRLDIKAPSLY NHFKNIRDVKTALTAKLLQELNDQMRRALVGKSGQEALQIYAETYRSFAFSNQAVYEL LISVPHTNEAVLLEGIHETNQIILQIFEAFQLTKEEKVHRSRELRSMIHGYLSLRFLG YFTKEPTIDPEDSYFWMINDFIATLP" gene 48868..50160 /locus_tag="AB5755_RS10830" CDS 48868..50160 /locus_tag="AB5755_RS10830" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002286708.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="multidrug efflux MFS transporter" /protein_id="WP_002308227.1" /translation="MAARIKEKLFRKRETWEQNLFVLWFGTFMAGIGFSLVMPFMSLY IDTLGNYSTAQLNFWSGLTFSSTFLVTTLISPWWGKLADQKGRKLMLLRASLGMAIVI SLMGCVTSVYQLVALRLLQGIFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTL LGPLLGGISASAFGYRPTFFITGIILFFVFLLSLFFVHEKFVPVKKENMVSAKQIFKD LKYPHVVIGMFVTTMIIQASNNSISPIISLYIRQLLHGHGNVTLISGIIASIPGIATL IAAPRFGRLGDKIGSERILAIGLGFAILVYIPMAFVTNVWQLAALRFLIGISDACLLP AVQALITKYSPHQAAGRIFSYNQSFQATGNVVGPMIGSSVSSAFGYRGVFLSTSLLVL VNFLLVRHNTQEIHQQETAEEKASGVSISSGHSPSHRQ" gene complement(50220..51338) /locus_tag="AB5755_RS10835" CDS complement(50220..51338) /locus_tag="AB5755_RS10835" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002286711.1" /GO_function="GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]" /GO_process="GO:0009058 - biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="WP_002308226.1" /translation="MEIANFGVEEWLNKWEKKAVYDIAQSSIEALTLDELVGLDGTNV SEFFEKRKNEPLDYGWIEGSDAFKQEVASLYQTVDPENILQTNGATGANLLALYALVE AGDHVVSMLPTYQQLYDIPKSLGATVDFVHLKEEEDWQFDLEQLEALVKPETKIICLN SANNPTGTLLDRKTLEKIAEIARTVDAYVLIDEVYAPLTDKGEFLSIVDVYEKGIATN SLSKTYSIPGIRIGWTATGPELAEVFRKYRDYTMICGGVLSDDLAVHALKNKEKILER NQKIITENLAILKQWVANEPKVELVAPNYVSTSFIKLTIEEDDQTFCINLLEETGVLL VPGSAFDLPKHARLGYCCKKETLEKGLSLLSEFLKKQA" gene complement(51352..52773) /gene="arcD" /locus_tag="AB5755_RS10840" CDS complement(51352..52773) /gene="arcD" /locus_tag="AB5755_RS10840" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002286721.1" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /GO_function="GO:0043858 - arginine:ornithine antiporter activity [Evidence IEA]" /GO_process="GO:0006527 - arginine catabolic process [Evidence IEA]; GO:1903826 - L-arginine transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="arginine-ornithine antiporter" /protein_id="WP_002308225.1" /translation="MEKKSTGISKWGLVALVVSSSIGSGVFGITSDLASSAAPGPAIL SWIIVGIGILALVLSLNHLGEKRPDLDGGIFGYAEASFGKLGGFISGWGYWLSAWLGN VAFATMLMSAMGEFFPIFKGGQNVPSILFASLFIWGLTLLVNNGIEGASVINTIVTIC KLVPLFLFLIFVFIAFKVNIFTTNFWGNVSDNLVNGSGQQGTIWLQIKGCLMVMMWVF VGIEGASVLANRAKKRSEAQQASIMGLLCLLFIYILASILPYGVLSQEELATISQPAM ANILKGIVGNWGAALINIGLIISIIGSWLSWTMLPAETTMLMARDGLLPKAWGKTNKK NAPTYSLVVTAILTNLFLLTFLVTDYAYQFAYSLCTAAILICYLLVGIYQVQFSLKEG IKKQVVIGGIAVVFELMGITLAGFSYVLLCSIAYLPGFCFYWIACRETNHQITGKEKV MIGLICVAALLSIGLLTVGWIKI" gene complement(53017..54138) /gene="mnmA" /locus_tag="AB5755_RS10845" CDS complement(53017..54138) /gene="mnmA" /locus_tag="AB5755_RS10845" /EC_number="2.8.1.13" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005880185.1" /GO_function="GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]" /GO_process="GO:0008033 - tRNA processing [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tRNA 2-thiouridine(34) synthase MnmA" /protein_id="WP_002313365.1" /translation="MTDNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDT DENGVCTATEDYKDVAKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVM CNKEIKFKAFLDYAMDLGADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLS QEQLSKTMFPLGGMEKSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLPAK KGNMVTLDGEVKGQHAGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQG FHHPALYATSLDASEIHFTTNEPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFD EPVRAITPGQAVVFYDGMECLGGGLIDHAYQETKVLQYV" gene complement(54345..54950) /locus_tag="AB5755_RS10850" CDS complement(54345..54950) /locus_tag="AB5755_RS10850" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002374996.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002308223.1" /translation="MLSIESKKSKRVSVVLLVFCMILLSSHLYIRHEVIGFLIIQYSC WILSGISLAFTRRMDSIKVKWLVIALHFLLICGLGLFYIIGWLSLSRLDLLLGCVLYI GLVEILEYKQKEKAFFLFGLGLPMLISISLLIWIHYLLAFYLNTDRMWAIIALLLFIM ISGLMGLYFSTKLEDNRIKWLLLGMNYLFATYYNVVLLFFL" gene complement(55039..55656) /locus_tag="AB5755_RS10855" CDS complement(55039..55656) /locus_tag="AB5755_RS10855" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002374996.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_002313364.1" /translation="MLSIESKKSKRVSVVLLVFCMILLSSHLYIRHEVIGFLIVQYSC WILSGISLAFSRRMDSIKVKWLVIALHFLLTCGVGLVYIIGWIIGWISLPRWELLLVC VLYFGAVVTLDYQKKKKTFYLFGLGLPMLISISSLIGIHYLLAFHSNTIKSWLVIPLL LFMMISGLMGLYFSTKLEDNRIKWLLLGMNYLFATYYNIVLLFFL" gene 57825..59756 /locus_tag="AB5755_RS10860" CDS 57825..59756 /locus_tag="AB5755_RS10860" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002312058.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YiiX/YebB-like N1pC/P60 family cysteine hydrolase" /protein_id="WP_368260105.1" /translation="MKSKIKLFLTTCLLAVAFAIPITTVHADTDTQQILEEYYEEFKN EYASFDQTFEEFTSNYYNQPFNSAISEEDQLRDYLNTVNEHYIRKEAEQLSKDPPLWS FNIGNALENITFEKVPTYHKYDLMNIVQPGDIIFERKRAGITPVFLHHVMIVEGIYEE THSINGKPETFTYIRTIEATDYSPILETKAGGVVYGVLDDERFDYTDSTILRVPAGTT AQRNAAISFMRGQLGKQYSVWGDIMGRDRSSTRNDWYCSSLIWAAYMNATPDGRIDEL TNENDPSFQGIDLERTDFINGMGVTPNDIKKSDKVEKINPFFVNYKDYAENIRWSNAG TPIDGEDFIFSRGSNSYTLRNDYYFIATDKNNGIPYASTRLTFGRNHSGTIVVEFDMF TRFLLTDEARAKFSDRNIPLIPETIEDHDVPNYVMNWINTYTQCSLEIVYSNNISTDN NHLRYNPSFTKITKKKHPVNPYQINQVVHTPPAFTQQRFDYTENLSIYDKYEMTRPNP FNADVSYNRATPSWYYFYNNYHALIKLENGTYRHASYLRIHGSFTTAASVRNGYGFNH DFTMTDEAKAIYRNYFYHIGVNQSVDYAIDWLNRYTKENTLIVYSTNIDNDVRKLNDG TATVRKAVNDQGKFVYCIL" gene complement(60026..60613) /locus_tag="AB5755_RS10865" CDS complement(60026..60613) /locus_tag="AB5755_RS10865" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002329566.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="metallophosphoesterase family protein" /protein_id="WP_002313362.1" /translation="MNYFTSDMHFFHERLLGENDFAPRLFANVDEMNQQLITSWNAVV KETDHVYHLGDLAMHPQYEKANADILELVSQLQGTIHLIKGNHDSRAFFRYLEKNDPG LSDGSPKFYFYDVGAIVKFDHQQYYLTHYPMLLGPNDTIRNLHGHIHHYSVPIENVVN VGVDAPERDLLKEKLPFGTPLSEKQIKEIYEAKRS" gene complement(60743..62020) /locus_tag="AB5755_RS10870" CDS complement(60743..62020) /locus_tag="AB5755_RS10870" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002308213.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="WP_002308213.1" /translation="MGEEKEPVLHWRKNINLFLTGQFLSGITSMIVQYAIIWYLTKET GSATILSFATLLGMIPMVLLSPFAGPLVDRWDKKRLLILTDIIVALFAMVLVVVGTIS DTFPLWLVFVSLFIRAIAQTFQMPTIQSILPTMVPEEELTRINGQLGMVQSANFIIAP AIGAFLFTVIPINWLILLDVLGAVFGVGLLVFVTIPKVISQGETIHLLTDTKFGVKKL YENKGLWHIMLNGAVFTLLFMPAASLYPLMTMGYFGQNVGQAGLVEVVYSVGMLAGGA VIGFFGKWKDRMKPIFMAYVVVGTTIGASGLLPGTTQGFFYFLLLNAGAGFATPYFNT LLMAIIQQSYEPNVLGRVLGVFNSLMTLPGPIGLIFAGPLTDKIGVEKMFLIAGIGTL LCGIVLFLTPVARNYDKELQKKLVKEHREQENE" gene 62211..62993 /locus_tag="AB5755_RS10875" CDS 62211..62993 /locus_tag="AB5755_RS10875" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002374983.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_086309971.1" /translation="MKINFQTTLTPEEIKIVLEQTQGTIWISHKLPKLPENAFYLFYH QKVCTAIGKTVQPETIDTVIMIQLPWDIEADYMIYMLTEQAEKAGLTIAKESFPSIPE TARKKMAEHQEKIAAILSTFGYPIDFSVPSAAEDTKKKPAKARHRWSKEVSEIPFTVD FRGSQATLYWIKRNELLIKAGATLVKDPPLNKDGSLGYAAKYGQKLRDDYKDKISGTT TIEDIIVKSVNEASLLLYFAGTNSWLEIVDEHGKSIDEWTRV" gene complement(63102..63446) /locus_tag="AB5755_RS10880" CDS complement(63102..63446) /locus_tag="AB5755_RS10880" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002286736.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1831 domain-containing protein" /protein_id="WP_002286736.1" /translation="MAFETTATVLGAPISYRLHPDAKRYTLRDNGFTETNGGNYQLIR PLDATPQSKEGFKLKITVSKDIQTLKMSITTANGLKAVNIFKDPKQKMSQDKFYFLMD GMISRGLFEKVE" gene complement(63583..64728) /locus_tag="AB5755_RS10885" CDS complement(63583..64728) /locus_tag="AB5755_RS10885" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016631303.1" /GO_function="GO:0030170 - pyridoxal phosphate binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cysteine desulfurase family protein" /protein_id="WP_368241567.1" /translation="MNEVKTIYLDHAATTPMHPQVIEAMTAIMQETFGNPSSIHGFGR HAHEKMETARQIIADSLQAKPHEIIFNSGGTEGDNTAILETAFSRQKEGRHLITTAIE HPAVLNTMKYLETKGFDVTYLPVDEKGNLSIEEIKKALREDTILVSVMYGNNEIGNLM PIKEIGELLADHPAYFHTDAVQAYGNQTIHPEELGIDLLSISAHKINGPKGVGFLYKR DGVNIPALLLGGEQEEKRRAGTENLAGIWGMAKAVELLSPEEREARNNKYQGFQQLIL DTLEANEIPYQVNGDLTNKLPHVLNLRLIGEANDLLLMKLDLNGIAISTGSACTAGNI EPSHVLEAMYGEDTPILKESIRISFGLDNTEEDIHCFLDQLVRAVKK" CONTIG join(JBCOJH010000015.1:1..65059) //
Whole sequence (abbreviated view) Selected region from: to:
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