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NCBI Reference Sequence: NZ_JBFUOA010000098.1
FASTA Graphics
LOCUS NZ_JBFUOA010000098 28200 bp DNA linear CON 08-AUG-2024 DEFINITION Stenotrophomonas maltophilia strain EX3I8A1 NODE_44_length_28200_cov_320.542296_pilon, whole genome shotgun sequence. ACCESSION NZ_JBFUOA010000098 NZ_JBFUOA010000000 VERSION NZ_JBFUOA010000098.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN42318128 Assembly: GCF_041076315.1 KEYWORDS WGS; RefSeq. SOURCE Stenotrophomonas maltophilia ORGANISM Stenotrophomonas maltophilia Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group. REFERENCE 1 (bases 1 to 28200) AUTHORS Moreira Da Silva,J. TITLE Direct Submission JOURNAL Submitted (17-JUL-2024) Clinics, CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive, Avenida da Universidade Tecnica, Lisbon 1300-477, Portugal COMMENT REFSEQ INFORMATION: The reference sequence is identical to JBFUOA010000098.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. v3.14.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 250x Sequencing Technology :: Illumina NovaSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_041076315.1-RS_2024_08_07 Annotation Date :: 08/07/2024 11:56:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,396 CDSs (total) :: 4,316 Genes (coding) :: 4,273 CDSs (with protein) :: 4,273 Genes (RNA) :: 80 rRNAs :: 2, 1, 2 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 16S) partial rRNAs :: 1, 2 (5S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 43 CDSs (without protein) :: 43 Pseudo Genes (ambiguous residues) :: 0 of 43 Pseudo Genes (frameshifted) :: 15 of 43 Pseudo Genes (incomplete) :: 28 of 43 Pseudo Genes (internal stop) :: 6 of 43 Pseudo Genes (multiple problems) :: 5 of 43 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..28200 /organism="Stenotrophomonas maltophilia" /mol_type="genomic DNA" /submitter_seqid="NODE_44_length_28200_cov_320.542296_pilo n" /strain="EX3I8A1" /isolation_source="Fomite" /db_xref="taxon:40324" /geo_loc_name="Portugal: Porto" /collection_date="2023-11" gene complement(187..453) /locus_tag="AB6V49_RS20875" /old_locus_tag="AB6V49_20875" CDS complement(187..453) /locus_tag="AB6V49_RS20875" /old_locus_tag="AB6V49_20875" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006452846.1" /GO_function="GO:0008270 - zinc ion binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DksA/TraR family C4-type zinc finger protein" /protein_id="WP_005414219.1" /translation="MATGWAGDGAVQDQIDATVDDAIARARRQLRQGPGLEHCEECDA PIPLARRQAVPGVRLCVACQQAHDDEEQAHAGYNRRGSKDSQLR" gene complement(624..1181) /locus_tag="AB6V49_RS20880" /old_locus_tag="AB6V49_20880" CDS complement(624..1181) /locus_tag="AB6V49_RS20880" /old_locus_tag="AB6V49_20880" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012480957.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2058 domain-containing protein" /protein_id="WP_005414218.1" /translation="MAKPNALQEQLLKAGLAKKSQASAAAREQAKARQGKAESTSAEV QREAERVRAEKIERDRALAAERNAQARQAEQKAQAKQIIAAHAVPHKGDDEYRFSDGT AIRTLLIDPKLRKALSVGVLVIVAHGDGYALLPRAAAEKVRERAPEAIIVDHGQPGST AEISTGNAEDDAYYAQFQVPDDLVW" gene 1244..1744 /locus_tag="AB6V49_RS20885" /old_locus_tag="AB6V49_20885" CDS 1244..1744 /locus_tag="AB6V49_RS20885" /old_locus_tag="AB6V49_20885" /EC_number="3.4.24.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005414217.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="M48 family metallopeptidase" /protein_id="WP_005414217.1" /translation="MAVLKYLTGYPEPLVAQVSELLAQGKLGPWLQQRYPDPHEVRSD RQLYDYTQELKDRYLRKSVPLNKVCYDNTLEVIKHALGTHTAISRVHGGRLKASREIR IATVFRQAPAAFLRMIVVHELAHLKEADHNKAFYQLCQHMEPEYLQLEFDTRLYLTEL ANRGQR" gene 1792..2490 /locus_tag="AB6V49_RS20890" /old_locus_tag="AB6V49_20890" CDS 1792..2490 /locus_tag="AB6V49_RS20890" /old_locus_tag="AB6V49_20890" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005418190.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="RNA pseudouridine synthase" /protein_id="WP_049396640.1" /translation="MEPIRLDKRLSALLGIPRGEARRYIEGGWVTVNGDVVEQPQRLV DDSAVIVVAEQASDEKAERVSMLLNKPAGVAAETLCALVSSDSRSELDASDIRPLQRH FHGLQLAASLPASDSGLVVVSQDPATLAHLQRNLGRTEQEYLIEVAEGGPERGPWLMA RLQQEAGGGKVSWQSEQRLRFAGKGLTAKGLRAAVTAAGLQVTGVRRLRIGRVALGPL PPGQWRYLGSDERF" gene 2621..4213 /locus_tag="AB6V49_RS20895" /old_locus_tag="AB6V49_20895" CDS 2621..4213 /locus_tag="AB6V49_RS20895" /old_locus_tag="AB6V49_20895" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005414215.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phospholipase D family protein" /protein_id="WP_111118436.1" /translation="MAWLYHRGMSLPKPLWRRLLRVAAIILAVLVLLVLSGLLLADHL TPQARGTPSHVLPLQPAQTRIDQQIVPLQEAHPGQSGVAFLSDGMDAFAARAMITTHA GRSLDLQYYIWHDDLIGHLMAKALYDAAERGVRVRILLDDMNAKDKDALMMALDAHPN IEIRLYNPFRNRTGILRMVEMVQRFFSVNHRMHNKSWIADGRVAIVGGRNIGEEYFSA RTDVNFQDLDLLVAGPAVEQANRIFDDYWNSETAIPVSALAFHTDAQLRLLVRESDHE AQRDVARPYLARVAESRKRQRPSPEPLRWSGAVRIVSDPPMKHRKDDRAAWLVSTLIS ELQAARHKALLISPYFVPGNEGLDGFSAMSGRGVQVGVVTNSLAANDVAAVHGGYMGY RVPLLEAGVHLYELKAQGQSGDAGVFGSSGASLHTKAFLVDDRRGFVGSFNLDPRSAY LNTEMGVLFDDPVLGAQLRDEYLRLADPRHSWWLALDDRRRLRWLEREPPPHWVEEEP GATARKRWLSRVISWLPVESQL" gene complement(4217..5293) /locus_tag="AB6V49_RS20900" /old_locus_tag="AB6V49_20900" CDS complement(4217..5293) /locus_tag="AB6V49_RS20900" /old_locus_tag="AB6V49_20900" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005410577.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HDOD domain-containing protein" /protein_id="WP_111118437.1" /translation="MTPAWWRSLRGWLARSTGAAPLRLAAVSRQAVAAAAASLQGEAL QAGEIAAHLQRGLHALALYPRLAGEPAPVQDPALGEAVARALQDRDWAARHLPRRPQL LPQLIQTVNDDAASARVMAAIIGQDPVLTGNLLRIANSPAYKVHERPVESLQRAVTLV GTEGVRQIISAVLVQPVMQVQCGMFPQFSTIIWEHALLASRAAADHARTVTFGDAFAA QWLGLVQGLGSALVMRQLLQEAQARDETVEPALALQLLQQWSLPLAQRVAAAWELPEP VHQALAPEADGPLADSLRLASAAAAASLLCRHGHAGQSRMLALLEQLPSAPPHALRWI WRRLHGRSVETRDEAGQEEAGPTP" gene 5572..6669 /locus_tag="AB6V49_RS20905" /old_locus_tag="AB6V49_20905" CDS 5572..6669 /locus_tag="AB6V49_RS20905" /old_locus_tag="AB6V49_20905" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019662147.1" /GO_function="GO:0016491 - oxidoreductase activity [Evidence IEA]" /GO_process="GO:0006520 - amino acid metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein" /protein_id="WP_005410578.1" /translation="MLFETLATTGHEQVVFCHNHDAGLKAIIAIHNTTLGPALGGVRM RPYASTDEALADVLRLSRTMTYKNALAGLNVGGGKAVIIGDPKTDKTEVLFRAFGRYV DSLGGRYITAEDVGTDVNDMENIYLESQFVTGVHQVHGGSGDPAPFTAYGALQALMAS MRFKFGHEEVGKTSIAVQGLGHIGMELVKLLRDRGAKLYVTDLDSALVDRAVSDFGAE AVKPDEIHEVNADVFAPCALEGAINADTLPRIKAKIICGTANNQLSSLEIGDELHARG ILYAPDYAVNAGGVMNVSLEIDGYNRERAMRLIRSIYHNLTRIFELSQRENIAPQRAA DRIAESRILSIGKLKMPLGRSTPRLGNLRGG" gene complement(6715..9561) /locus_tag="AB6V49_RS20910" /old_locus_tag="AB6V49_20910" CDS complement(6715..9561) /locus_tag="AB6V49_RS20910" /old_locus_tag="AB6V49_20910" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005418200.1" /GO_function="GO:0008236 - serine-type peptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="S8 family serine peptidase" /protein_id="WP_366559860.1" /translation="MERTMMVRSVLATALAMALTACGGGGGGGSNVRVDPPPTTPTPP TTPPPTTPPPAKPQEPAFDAHLSVTNARAAQAAGLTGQGVRIGIVDSGVQRNAVALNG RVLANFNYIDPARNNLAVDDVVGHGTAVASLAAGAAVGTWPGGIAPGAQIVSARIISD KPPTDDGSGQGNAFSGPLGVAHVHQDLISYNVKVMNNSWGGLYWTDLPTTAQVAAEYR PFVINHGGLVVFAAGNDGRSEPSSLAALPSQKGVAGTLPAADLERGWLVATAVDPFTP GALASYSNACGQAARYCLAAPGSAVYPDANGGSYYWNYGTSFAAPLVSGAAALVWQRF PYFNNDLVRQTLLGTAKDIGAPGVDPVFGYGLLDIGRAINGPGRFDWGDVVANVDAGS TNSMWSNDITGSGGLVKQGGGKLVLAGNNSYSGATRIERGILTLQNGGVIRSNVTILA QPDPDSTGLQFNGGTPRVIGNVVNGGSVFLTTGNTTGTIEGNYTQQPGAQLMIALGAN ALQVTGNATINGGVRVHGFVSGYVPQNGARQDLIHAAGGLNGTFSTQATSTGLQGLTL VAPTYGYDSNNAWLNVNQVSVTAAASGLSASAQAAAQRLEGAFAVLDGNTGLQGSPFG AAAGALQWAGGGQQGLADSLQSLSGQAHARAEAATFDSIDMSRRAIAERFDRVQATPR LRGSWQSALGEAGQGSFAGNAADSRGWMAGQDLPLGGNGLMGVAFGETRSNGGSSFGG DRGRDRQAQAQLYAGWNLGRGYALAQFGSGQFTRALDRQLLLGAGAYGVSARYGGRFS SASVEGGYRLGRAGASVTPYLGASTTRVDTDAFNELGGFGFGLRGDATRAQRSQMLAG IRGERGWGRWNLRGHAEWQQRLDGGDADWQASFVGVDAWAPLAGWNAPRGSALIGVAL ESWWGRNGRLSLGFDQRIGGEGARQAALRYSTGF" gene 9745..10920 /locus_tag="AB6V49_RS20915" /old_locus_tag="AB6V49_20915" CDS 9745..10920 /locus_tag="AB6V49_RS20915" /old_locus_tag="AB6V49_20915" /EC_number="2.3.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005911622.1" /GO_function="GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]" /GO_process="GO:0006631 - fatty acid metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiolase family protein" /protein_id="WP_005410580.1" /translation="MSNIVIAAAKRTAIGSFLGQFNGVPTPTLGAAAIAAALEQSGVP ASDVSEVLMGCVLPANLGQAPARQAAIAAGIPLSAGATTLNKVCGSGMKTIMLGHDLI KAGSASIVVAGGMESMSNAPHMLPNSRTGNRFGNFQAVDHMAHDGLVNAYDGKAMGEF AECAVDKYQFSREEQDAYAIESVKRAQAAQANGAFADEIVAVKVATRKGEVEVAIDEQ PGRSDIAKIPTLRPAFKKDGSVTAASSSSISDGAAAVVLLTEEDAAARGITPLARIVG HATHSQEPEWFTTAPIGALHKLLGKTGWSLDQVDLFEINEAFAVVAMAPMRELGIPHD KLNVNGGACALGHPIGASGARLVVTLVNALRTRGGKRGIATLCIGGGEATAIAIELI" gene 11045..11386 /locus_tag="AB6V49_RS20920" /old_locus_tag="AB6V49_20920" CDS 11045..11386 /locus_tag="AB6V49_RS20920" /old_locus_tag="AB6V49_20920" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011269920.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_005410581.1" /translation="MSINKLLVAMSLALALAACSKQEAAQDAAASANEAATEAQAAAD QAAAAGAQTADAAQQAADTAATAADAATDAAAQTAGAATDAAAGAAADAAKAAEGTAE KAKDAAEEAKK" gene 11544..11954 /locus_tag="AB6V49_RS20925" /old_locus_tag="AB6V49_20925" CDS 11544..11954 /locus_tag="AB6V49_RS20925" /old_locus_tag="AB6V49_20925" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006461120.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_005410582.1" /translation="MKIRPITTTLLAASLLLALAACKGPEAEQAKQDAQQAADSAGAA ARDAVDKAAAATREAADKTAAASEQAAADTQQALDKAADATANAADKAKDAATDAAAH ASDATADAAQKVADKARDVANDAKANAAKEEAKH" gene complement(12191..13828) /locus_tag="AB6V49_RS20930" /old_locus_tag="AB6V49_20930" CDS complement(12191..13828) /locus_tag="AB6V49_RS20930" /old_locus_tag="AB6V49_20930" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010482844.1" /GO_function="GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase family protein" /protein_id="WP_076739751.1" /translation="MSGPSFSSNAPFETHVVLNQPPPFAGRQLWTDDVALAEAVHREG AGALAPRLAVYGALAGDELYRLGFDANRDRPQLRTHDAQGHRIDTVEFHPAYHQLMSA AKQHGVAGLSWHEPQPGAHVARAALSYLHHQAEAGTSCPLTMTHAAVAVLQSQPHLAE WARKAAAPVYDPRDVPVADKNGITLGMGMTEKQGGSDVRANSTRAEPIDGERYRLVGH KWFFSAPMCDGFLVLAQAPGGLTCLLMPRRLADGDRNAFRLMRLKDKLGDWSNASSEV EFCGAQAWRVGEEGRGVATIIGMVMMTRLDCMLGAAAEMRMALAQALHHARHRRTFGK LLVEHSLMTNVLADLALESEAATVLAMRIARAVDRAGVDANEAAMARLGTALGKYWLC KRAPAFVNEAQECLGGAGYVEESMLPRLYRQAPLNSIWEGSGNIQCLDVLRALAREPE AMAALRGELASVADRDARYAAALQRWAAAPPPEEAQARLFCERTALLLQAALLLRARS PMAEAFVRSRLEGEHGLAFGTLPAGLELTAMLARALP" gene 13942..14940 /locus_tag="AB6V49_RS20935" /old_locus_tag="AB6V49_20935" CDS 13942..14940 /locus_tag="AB6V49_RS20935" /old_locus_tag="AB6V49_20935" /EC_number="3.1.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010482842.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ligase-associated DNA damage response exonuclease" /protein_id="WP_005414211.1" /translation="MEGNDDLVVLRPEGLYCAAGDFHIDPWRPVPRAVITHGHGDHAR PGMGEYHCSEGSLPILRWRLGDVGVQAHAEGVPFRLGRVQVSLHPAGHVLGSSQVRID DGERVWVASGDYKRQPDPTCTPFEVVPCDTFITEATFALPIYRWPDTPAVAAEIVAWR RECEQRGEAAILLCYALGKAQRVLAELLPLDDRPAWLHGAIANGVSVYRQANIPMLET LTVAEQGRQPDAAGQLILAPPSAAGTPWMRRFGPHQLGFASGWMQLRGNRRRRNVDRG FVISDHADWPALLQTIEQTGAQRVIATHGNTDALIPFLRERGVAAEAFRTDFGSEE" gene 14937..16544 /locus_tag="AB6V49_RS20940" /old_locus_tag="AB6V49_20940" CDS 14937..16544 /locus_tag="AB6V49_RS20940" /old_locus_tag="AB6V49_20940" /EC_number="6.5.1.1" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019300442.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]" /GO_process="GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ATP-dependent DNA ligase" /protein_id="WP_099484530.1" /translation="MKAFAALYQRLDRSTATLDKRAALVDYFRHAAAHDAAWALYLLS GGKVGGARRRIAASGELRSWIAEESGLPAWLVEDSYAQVGDLAETLTLLLDDPLHPAA DRPLSDWIEQHLLAVANQPEVVRRAAVVAGWRQLRSGERLVFNKLLTGALRVGVSQRL VQQALAEWSGLDIARIAQRMLGEWVPSPGLLGQLLSPDELPLDRQQPYPFFLASPLEG EPGERLGPVEDWLLEWKWDGIRLQLLRRRGEVALWSRGEERLDGRFPEIEQAAMALPD GCVLDGELLAWDESDDLPRAFTALQTRIQRRKPGAATLRNTPVRVLAYDLLERDGEDL RGLPLQQRRAQLAEVIGALGDTRIQLSPDVPAGDWLQAATLREAARERGVEGLMLKRR TSAYQSGRRRGDWWKWKVDPLTIDAVLLYAQAGHGRRSTLYTDYTFGVWDGDTLVPVA KAYSGLDDKEILALDRWIRANTRERFGPVRSVRAEQVFELGFEAVNRSSRHKSGIAVR FPRILRWRHDKPAAEADQLATLQALAR" gene 16541..19000 /locus_tag="AB6V49_RS20945" /old_locus_tag="AB6V49_20945" CDS 16541..19000 /locus_tag="AB6V49_RS20945" /old_locus_tag="AB6V49_20945" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014038074.1" /GO_function="GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ligase-associated DNA damage response DEXH box helicase" /protein_id="WP_114618679.1" /translation="MNRRQALRRLEDWFAARGWRSLPFQRAMWRHYLAGDSGLLHTPT GSGKTLAMFGGPLLQAMLDPPSAPRRASAVRPLQVLWVTPLRALASDTARALQAVVDG LGLGWRVGLRSGDASNRERRQAREGRVDVLVTTPESLALLLSYPDTLPRMRQLRCVVV DEWHELLGNKRGVLLQLNLAVLRDAAPSLQLWGLSATLGNLPQARDVLLPGQQDAPIV QGVRPRAISVRSLLPEPGERFPWAGHLGLAQLPRVLDALMAVRSSLLFTNTRAQAELW HQALAAVWPEDADTLALHHGSLDPALRQQVEDGLRAGALRCVVATSSLDLGVDFPEVE QVLQLGSPKGVARLRQRAGRARHRPGAGGAIVCIPSHALELAEYAAVRRALHEGVVEA RRPPTLSLDVLAQHAVSRALAGGFDSDALLAQVRRTHAFATLGDEQWRAVLDFIVQGG QALAQYPDFHKVVRDADGSYRMHDRRQALRHRLSIGTISSDGSVRVQFLRGGGLGAVE EQFASRLRRGDRFQFAGRLLELVQLRDMTAFVRRARGRGDGVVPRWQGGQLPLSMPLG RELEWVLSGADDSAESRWLSPLLALQQQLSALPGPEHLLVEEVRRREGQFMFVYPFAG RHVHEALAALLALRCTRQQRNSIGYAVNDHGLVLAPARPIDLDEAQWRALFGNDRLLA DLREAVNLGELARRQFRGIARVAGLLVPSLPGGMPRSLRQLQASAGLLYDVLREHDPE HLLLALAEHEVLYDSLDLPGVQQVLERIGTQQLSLQRPSSLTPLGFPLWAERLRGQFS NEDWRVRVQRAAQQLERRHDR" gene 18990..19631 /gene="pdeM" /locus_tag="AB6V49_RS20950" /old_locus_tag="AB6V49_20950" CDS 18990..19631 /gene="pdeM" /locus_tag="AB6V49_RS20950" /old_locus_tag="AB6V49_20950" /EC_number="3.1.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005410587.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ligase-associated DNA damage response endonuclease PdeM" /protein_id="WP_114618678.1" /translation="MTDELPLLLAGESVVLVGARALYWPARQALLIADLHLGKADVFR RAGIALPSGGTGEDLQRLQRLLDLHACRELWILGDILHGPAHRAAWYRQWLGWRERNA SLDVHVLRGNHDRQLPHAQLQVQIHDEVRLRPFLLRHEPMPDAALHVIAGHLHPQVAL KPLRRRFPAFWLRDRMTVLPAFSAFTAGIVPAPARGEQMIACVESGLVELPVA" gene complement(19633..19902) /locus_tag="AB6V49_RS20955" /old_locus_tag="AB6V49_20955" CDS complement(19633..19902) /locus_tag="AB6V49_RS20955" /old_locus_tag="AB6V49_20955" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005418216.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_024958257.1" /translation="MLFAVEELESEICKLRGLLQMLHEDQPDVLEDVFEFHVGSLVSH ASPEHHARIRTCAQEMLAAIQALPRRRENDTPDFQLMPQLGIGPA" gene complement(20083..21351) /locus_tag="AB6V49_RS20960" /old_locus_tag="AB6V49_20960" CDS complement(20083..21351) /locus_tag="AB6V49_RS20960" /old_locus_tag="AB6V49_20960" /EC_number="1.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010482834.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FAD-dependent oxidoreductase" /protein_id="WP_114618709.1" /translation="MTERLRIAVIGYGTAGQAVSILLTRDGHEVEIFERVPTPGPVGA GFLLQPSGLQVLWQMGLLDAVRAHAAPVHRLYGDTPCERAVMDMRYDGLDARLHGLGM QRGALFSLLDQARAGAGNLHAGVTIAAVDAEQGRLRDSEGRLHGPFDLVVAADGAAST LRSTIAGGAGLDRVYPWGALWCLLPAEDWPHVQELRQRYVAARKMIGLLPVGTRPGDD TPRLSFFWSLPRTDFERWQADGMTPWLDELHALWPQASARFAHLRDAGQLARAVYRDA VMTRWHQGRMVLAGDAAHAMSPQLGQGVNMALLDALALRDAVRTHGGGAEALQAYQAQ RRAHVAVYQRWSRWLTPLFQSDRDAWAKTRDVLLGPMGRLPGGRGHMLRVLSGTQQGW FGSLTLDPAFIDALATTMEIPRSNAITAGA" gene complement(21455..21661) /locus_tag="AB6V49_RS20965" /old_locus_tag="AB6V49_20965" CDS complement(21455..21661) /locus_tag="AB6V49_RS20965" /old_locus_tag="AB6V49_20965" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003488188.1" /GO_component="GO:0005829 - cytosol [Evidence IEA]" /GO_function="GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="WP_005410590.1" /translation="MPNGTVKWFNDAKGFGFISPEDGSADVFAHFSAINSKGFRSLQE GQRVTYDVTQGPKGAQASNITPAE" gene complement(21750..22496) /locus_tag="AB6V49_RS20970" /old_locus_tag="AB6V49_20970" CDS complement(21750..22496) /locus_tag="AB6V49_RS20970" /old_locus_tag="AB6V49_20970" /EC_number="2.4.2.44" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019662159.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="S-methyl-5'-thioinosine phosphorylase" /protein_id="WP_005410591.1" /translation="MQQIALAVIGGTGVYNLAKLDDVQTHEVDTRFGRPSGPVRVGTL LGHRVAFLARHGEGHSLPPHKINYRANLAALQQLGAQRVLALNTVGGITENFGPRVLA CPDQIIDYTWGRISTICEEEGTDVVHVDFGHPYTPMLRSKILAAAKVTGVTVHDGGCY GATQGPRLETIAEIARMRRDGCDLVGMTGMPEAALARELGLDYACLAIIANWAAGCGD GEEITMAEVLANVQAASNGLPELVGELARG" gene complement(22579..23133) /locus_tag="AB6V49_RS20975" /old_locus_tag="AB6V49_20975" CDS complement(22579..23133) /locus_tag="AB6V49_RS20975" /old_locus_tag="AB6V49_20975" /EC_number="2.4.2.8" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006449878.1" /GO_process="GO:0009116 - nucleoside metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypoxanthine-guanine phosphoribosyltransferase" /protein_id="WP_005410592.1" /translation="MPNLTISQALAQADLLVDRPTIDKAIAGIADAIARDYKGEVPLF LSIMHGALPFAGQLALELGARGQDVQFDYLHATRYRGETTGGDLVWKHKPATSLFGRR VLLVDDILDEGYTLQGVRTWCLEQGATDVRIAAMTVKKHDRALPDVTADYAGIELPDR YVFGFGMDVNETLRCVPAIYAMKE" gene complement(23133..24140) /gene="nagZ" /locus_tag="AB6V49_RS20980" /old_locus_tag="AB6V49_20980" CDS complement(23133..24140) /gene="nagZ" /locus_tag="AB6V49_RS20980" /old_locus_tag="AB6V49_20980" /EC_number="3.2.1.52" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019336693.1" /GO_function="GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]" /GO_process="GO:0005975 - carbohydrate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="beta-N-acetylhexosaminidase" /protein_id="WP_005410593.1" /translation="MLLIGVAGTELTAQERDWLQHDAVAGVVLFKRNFASRQQVTDLS AAIRAAAPRPQLICVDQEGGRVQRFREGYSDLPPLQDIGALYATDPQQALALAERHAW LMASEVRASGLDLSFAPVVDLGRGNRAIGNRAFSEDPQVVAAFTAAYVRGMHSVGMAA TLKHFPGHGTVLEDTHVDTAIDPRALDELRAQDLVPFQAGIAAGADAVMMAHVIYPQI APEPAGYSPRWIQDILRGELGFRGVVFSDDIGMAASHSAGGVPARVHAHLDAGCDVVL VCHPELVDEALHAVQGRSLNTAALLGLIGRGALGWDGLLADARHGDTQSRLLETLGRT V" gene complement(24244..24939) /locus_tag="AB6V49_RS20985" /old_locus_tag="AB6V49_20985" CDS complement(24244..24939) /locus_tag="AB6V49_RS20985" /old_locus_tag="AB6V49_20985" /EC_number="1.8.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017155610.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DsbA family oxidoreductase" /protein_id="WP_005414203.1" /translation="MRIDIYSDVVCPWCWIGKHRFQQGVQLLGADAPELDIHWQPFQL DPDADDTPVPLREAYVRKFGGVERTEQILGQTQTTARAEGLPMDFSRGQVRVTTLPAH RVLWLAGQHGVQDAVGEALFRAHFELGQNLADSAVLIKAGVAGGLDGGEIAQMLASDR GLAEVEAKLAEAHALGISSVPTFVIDGKWAISGAQPPEAFANALRQIAAEQGAPATPA GDDEACGPDGCKV" gene complement(25053..25538) /locus_tag="AB6V49_RS20990" /old_locus_tag="AB6V49_20990" CDS complement(25053..25538) /locus_tag="AB6V49_RS20990" /old_locus_tag="AB6V49_20990" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014647992.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="CYTH domain-containing protein" /protein_id="WP_005414202.1" /translation="MGIEIERKFLVINDGWRSAAHRVIPMAQGYINDMGALDRGTQNA SVRVRIEGDHAALNLKSRTIGHTRQEFDYPIPVEDARALLALCVGGLIDKRRHLVEHA GLTWEVDEFLGDNAGLVVAEVELDSADQAIQLPDWAGAEVTDDARYYNVALASHPYSQ W" gene complement(25573..26907) /gene="rlmD" /locus_tag="AB6V49_RS20995" /old_locus_tag="AB6V49_20995" CDS complement(25573..26907) /gene="rlmD" /locus_tag="AB6V49_RS20995" /old_locus_tag="AB6V49_20995" /EC_number="2.1.1.190" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010380519.1" /GO_function="GO:0008173 - RNA methyltransferase activity [Evidence IEA]" /GO_process="GO:0006396 - RNA processing [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD" /protein_id="WP_111198234.1" /translation="MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGAL PGEVVMAEQTARSRHFDEARTVEVLQASPQRVTPKCPHFGTCAGCVLQHLGEDQQIVA KQRVLMDNLERIGHVKPGKVLAPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPR FVADLSQCLTVIPEIGTKVEALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLS DADRAAWAAFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAPWDVELAFRPLDFIQ VNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVAR ARENAVRNGLANAQFFSADLTQDQRSTPWMRQGFDKLLLDPPRSGAIEVLQQLPLKQF KRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKR" gene 27035..27763 /locus_tag="AB6V49_RS21000" /old_locus_tag="AB6V49_21000" CDS 27035..27763 /locus_tag="AB6V49_RS21000" /old_locus_tag="AB6V49_21000" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014647994.1" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="response regulator" /protein_id="WP_005410597.1" /translation="MQMTPRASRPRFLLVEDDIISRGFFKAALETLPADVDTADSLAS ALASAEPGAHDLWLIDVNLPDGNGAQLLRELRRSHPDTPALAHTADGDTSIHARLREA GFSDTLVKPLGRDQLLKAVRRALVNSPAGISVAPAPAAVELQVQDWDETAALAALNGQ RNHLIALRELFLAELPGVRDAVEQAVDQHDERQLRSQLHRLQASCGFVGAARLGRAVR QLHHAPESGQAQAGFRDAVAALLH" CONTIG join(JBFUOA010000098.1:1..28200) //
Whole sequence (abbreviated view) Selected region from: to:
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