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Stenotrophomonas maltophilia strain EX3I8A1 NODE_44_length_28200_cov_320.542296_pilon, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JBFUOA010000098.1

FASTA Graphics 

LOCUS       NZ_JBFUOA010000098     28200 bp    DNA     linear   CON 08-AUG-2024
DEFINITION  Stenotrophomonas maltophilia strain EX3I8A1
            NODE_44_length_28200_cov_320.542296_pilon, whole genome shotgun
            sequence.
ACCESSION   NZ_JBFUOA010000098 NZ_JBFUOA010000000
VERSION     NZ_JBFUOA010000098.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42318128
            Assembly: GCF_041076315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas maltophilia
  ORGANISM  Stenotrophomonas maltophilia
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 28200)
  AUTHORS   Moreira Da Silva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2024) Clinics, CIISA - Centre of
            Interdisciplinary Research in Animal Health, Faculty of Veterinary
            Medicine, Unive, Avenida da Universidade Tecnica, Lisbon 1300-477,
            Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFUOA010000098.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041076315.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 11:56:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,396
            CDSs (total)                      :: 4,316
            Genes (coding)                    :: 4,273
            CDSs (with protein)               :: 4,273
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 15 of 43
            Pseudo Genes (incomplete)         :: 28 of 43
            Pseudo Genes (internal stop)      :: 6 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28200
                     /organism="Stenotrophomonas maltophilia"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_44_length_28200_cov_320.542296_pilo
                     n"
                     /strain="EX3I8A1"
                     /isolation_source="Fomite"
                     /db_xref="taxon:40324"
                     /geo_loc_name="Portugal: Porto"
                     /collection_date="2023-11"
     gene            complement(187..453)
                     /locus_tag="AB6V49_RS20875"
                     /old_locus_tag="AB6V49_20875"
     CDS             complement(187..453)
                     /locus_tag="AB6V49_RS20875"
                     /old_locus_tag="AB6V49_20875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006452846.1"
                     /GO_function="GO:0008270 - zinc ion binding [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DksA/TraR family C4-type zinc finger protein"
                     /protein_id="WP_005414219.1"
                     /translation="MATGWAGDGAVQDQIDATVDDAIARARRQLRQGPGLEHCEECDA
                     PIPLARRQAVPGVRLCVACQQAHDDEEQAHAGYNRRGSKDSQLR"
     gene            complement(624..1181)
                     /locus_tag="AB6V49_RS20880"
                     /old_locus_tag="AB6V49_20880"
     CDS             complement(624..1181)
                     /locus_tag="AB6V49_RS20880"
                     /old_locus_tag="AB6V49_20880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012480957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2058 domain-containing protein"
                     /protein_id="WP_005414218.1"
                     /translation="MAKPNALQEQLLKAGLAKKSQASAAAREQAKARQGKAESTSAEV
                     QREAERVRAEKIERDRALAAERNAQARQAEQKAQAKQIIAAHAVPHKGDDEYRFSDGT
                     AIRTLLIDPKLRKALSVGVLVIVAHGDGYALLPRAAAEKVRERAPEAIIVDHGQPGST
                     AEISTGNAEDDAYYAQFQVPDDLVW"
     gene            1244..1744
                     /locus_tag="AB6V49_RS20885"
                     /old_locus_tag="AB6V49_20885"
     CDS             1244..1744
                     /locus_tag="AB6V49_RS20885"
                     /old_locus_tag="AB6V49_20885"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005414217.1"
                     /GO_function="GO:0016787 - hydrolase activity [Evidence
                     IEA]; GO:0046872 - metal ion binding [Evidence IEA];
                     GO:0008237 - metallopeptidase activity [Evidence IEA];
                     GO:0008270 - zinc ion binding [Evidence IEA]"
                     /GO_process="GO:0006508 - proteolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="WP_005414217.1"
                     /translation="MAVLKYLTGYPEPLVAQVSELLAQGKLGPWLQQRYPDPHEVRSD
                     RQLYDYTQELKDRYLRKSVPLNKVCYDNTLEVIKHALGTHTAISRVHGGRLKASREIR
                     IATVFRQAPAAFLRMIVVHELAHLKEADHNKAFYQLCQHMEPEYLQLEFDTRLYLTEL
                     ANRGQR"
     gene            1792..2490
                     /locus_tag="AB6V49_RS20890"
                     /old_locus_tag="AB6V49_20890"
     CDS             1792..2490
                     /locus_tag="AB6V49_RS20890"
                     /old_locus_tag="AB6V49_20890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005418190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="WP_049396640.1"
                     /translation="MEPIRLDKRLSALLGIPRGEARRYIEGGWVTVNGDVVEQPQRLV
                     DDSAVIVVAEQASDEKAERVSMLLNKPAGVAAETLCALVSSDSRSELDASDIRPLQRH
                     FHGLQLAASLPASDSGLVVVSQDPATLAHLQRNLGRTEQEYLIEVAEGGPERGPWLMA
                     RLQQEAGGGKVSWQSEQRLRFAGKGLTAKGLRAAVTAAGLQVTGVRRLRIGRVALGPL
                     PPGQWRYLGSDERF"
     gene            2621..4213
                     /locus_tag="AB6V49_RS20895"
                     /old_locus_tag="AB6V49_20895"
     CDS             2621..4213
                     /locus_tag="AB6V49_RS20895"
                     /old_locus_tag="AB6V49_20895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005414215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="WP_111118436.1"
                     /translation="MAWLYHRGMSLPKPLWRRLLRVAAIILAVLVLLVLSGLLLADHL
                     TPQARGTPSHVLPLQPAQTRIDQQIVPLQEAHPGQSGVAFLSDGMDAFAARAMITTHA
                     GRSLDLQYYIWHDDLIGHLMAKALYDAAERGVRVRILLDDMNAKDKDALMMALDAHPN
                     IEIRLYNPFRNRTGILRMVEMVQRFFSVNHRMHNKSWIADGRVAIVGGRNIGEEYFSA
                     RTDVNFQDLDLLVAGPAVEQANRIFDDYWNSETAIPVSALAFHTDAQLRLLVRESDHE
                     AQRDVARPYLARVAESRKRQRPSPEPLRWSGAVRIVSDPPMKHRKDDRAAWLVSTLIS
                     ELQAARHKALLISPYFVPGNEGLDGFSAMSGRGVQVGVVTNSLAANDVAAVHGGYMGY
                     RVPLLEAGVHLYELKAQGQSGDAGVFGSSGASLHTKAFLVDDRRGFVGSFNLDPRSAY
                     LNTEMGVLFDDPVLGAQLRDEYLRLADPRHSWWLALDDRRRLRWLEREPPPHWVEEEP
                     GATARKRWLSRVISWLPVESQL"
     gene            complement(4217..5293)
                     /locus_tag="AB6V49_RS20900"
                     /old_locus_tag="AB6V49_20900"
     CDS             complement(4217..5293)
                     /locus_tag="AB6V49_RS20900"
                     /old_locus_tag="AB6V49_20900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="WP_111118437.1"
                     /translation="MTPAWWRSLRGWLARSTGAAPLRLAAVSRQAVAAAAASLQGEAL
                     QAGEIAAHLQRGLHALALYPRLAGEPAPVQDPALGEAVARALQDRDWAARHLPRRPQL
                     LPQLIQTVNDDAASARVMAAIIGQDPVLTGNLLRIANSPAYKVHERPVESLQRAVTLV
                     GTEGVRQIISAVLVQPVMQVQCGMFPQFSTIIWEHALLASRAAADHARTVTFGDAFAA
                     QWLGLVQGLGSALVMRQLLQEAQARDETVEPALALQLLQQWSLPLAQRVAAAWELPEP
                     VHQALAPEADGPLADSLRLASAAAAASLLCRHGHAGQSRMLALLEQLPSAPPHALRWI
                     WRRLHGRSVETRDEAGQEEAGPTP"
     gene            5572..6669
                     /locus_tag="AB6V49_RS20905"
                     /old_locus_tag="AB6V49_20905"
     CDS             5572..6669
                     /locus_tag="AB6V49_RS20905"
                     /old_locus_tag="AB6V49_20905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019662147.1"
                     /GO_function="GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="WP_005410578.1"
                     /translation="MLFETLATTGHEQVVFCHNHDAGLKAIIAIHNTTLGPALGGVRM
                     RPYASTDEALADVLRLSRTMTYKNALAGLNVGGGKAVIIGDPKTDKTEVLFRAFGRYV
                     DSLGGRYITAEDVGTDVNDMENIYLESQFVTGVHQVHGGSGDPAPFTAYGALQALMAS
                     MRFKFGHEEVGKTSIAVQGLGHIGMELVKLLRDRGAKLYVTDLDSALVDRAVSDFGAE
                     AVKPDEIHEVNADVFAPCALEGAINADTLPRIKAKIICGTANNQLSSLEIGDELHARG
                     ILYAPDYAVNAGGVMNVSLEIDGYNRERAMRLIRSIYHNLTRIFELSQRENIAPQRAA
                     DRIAESRILSIGKLKMPLGRSTPRLGNLRGG"
     gene            complement(6715..9561)
                     /locus_tag="AB6V49_RS20910"
                     /old_locus_tag="AB6V49_20910"
     CDS             complement(6715..9561)
                     /locus_tag="AB6V49_RS20910"
                     /old_locus_tag="AB6V49_20910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005418200.1"
                     /GO_function="GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006508 - proteolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="WP_366559860.1"
                     /translation="MERTMMVRSVLATALAMALTACGGGGGGGSNVRVDPPPTTPTPP
                     TTPPPTTPPPAKPQEPAFDAHLSVTNARAAQAAGLTGQGVRIGIVDSGVQRNAVALNG
                     RVLANFNYIDPARNNLAVDDVVGHGTAVASLAAGAAVGTWPGGIAPGAQIVSARIISD
                     KPPTDDGSGQGNAFSGPLGVAHVHQDLISYNVKVMNNSWGGLYWTDLPTTAQVAAEYR
                     PFVINHGGLVVFAAGNDGRSEPSSLAALPSQKGVAGTLPAADLERGWLVATAVDPFTP
                     GALASYSNACGQAARYCLAAPGSAVYPDANGGSYYWNYGTSFAAPLVSGAAALVWQRF
                     PYFNNDLVRQTLLGTAKDIGAPGVDPVFGYGLLDIGRAINGPGRFDWGDVVANVDAGS
                     TNSMWSNDITGSGGLVKQGGGKLVLAGNNSYSGATRIERGILTLQNGGVIRSNVTILA
                     QPDPDSTGLQFNGGTPRVIGNVVNGGSVFLTTGNTTGTIEGNYTQQPGAQLMIALGAN
                     ALQVTGNATINGGVRVHGFVSGYVPQNGARQDLIHAAGGLNGTFSTQATSTGLQGLTL
                     VAPTYGYDSNNAWLNVNQVSVTAAASGLSASAQAAAQRLEGAFAVLDGNTGLQGSPFG
                     AAAGALQWAGGGQQGLADSLQSLSGQAHARAEAATFDSIDMSRRAIAERFDRVQATPR
                     LRGSWQSALGEAGQGSFAGNAADSRGWMAGQDLPLGGNGLMGVAFGETRSNGGSSFGG
                     DRGRDRQAQAQLYAGWNLGRGYALAQFGSGQFTRALDRQLLLGAGAYGVSARYGGRFS
                     SASVEGGYRLGRAGASVTPYLGASTTRVDTDAFNELGGFGFGLRGDATRAQRSQMLAG
                     IRGERGWGRWNLRGHAEWQQRLDGGDADWQASFVGVDAWAPLAGWNAPRGSALIGVAL
                     ESWWGRNGRLSLGFDQRIGGEGARQAALRYSTGF"
     gene            9745..10920
                     /locus_tag="AB6V49_RS20915"
                     /old_locus_tag="AB6V49_20915"
     CDS             9745..10920
                     /locus_tag="AB6V49_RS20915"
                     /old_locus_tag="AB6V49_20915"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005911622.1"
                     /GO_function="GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="WP_005410580.1"
                     /translation="MSNIVIAAAKRTAIGSFLGQFNGVPTPTLGAAAIAAALEQSGVP
                     ASDVSEVLMGCVLPANLGQAPARQAAIAAGIPLSAGATTLNKVCGSGMKTIMLGHDLI
                     KAGSASIVVAGGMESMSNAPHMLPNSRTGNRFGNFQAVDHMAHDGLVNAYDGKAMGEF
                     AECAVDKYQFSREEQDAYAIESVKRAQAAQANGAFADEIVAVKVATRKGEVEVAIDEQ
                     PGRSDIAKIPTLRPAFKKDGSVTAASSSSISDGAAAVVLLTEEDAAARGITPLARIVG
                     HATHSQEPEWFTTAPIGALHKLLGKTGWSLDQVDLFEINEAFAVVAMAPMRELGIPHD
                     KLNVNGGACALGHPIGASGARLVVTLVNALRTRGGKRGIATLCIGGGEATAIAIELI"
     gene            11045..11386
                     /locus_tag="AB6V49_RS20920"
                     /old_locus_tag="AB6V49_20920"
     CDS             11045..11386
                     /locus_tag="AB6V49_RS20920"
                     /old_locus_tag="AB6V49_20920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011269920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005410581.1"
                     /translation="MSINKLLVAMSLALALAACSKQEAAQDAAASANEAATEAQAAAD
                     QAAAAGAQTADAAQQAADTAATAADAATDAAAQTAGAATDAAAGAAADAAKAAEGTAE
                     KAKDAAEEAKK"
     gene            11544..11954
                     /locus_tag="AB6V49_RS20925"
                     /old_locus_tag="AB6V49_20925"
     CDS             11544..11954
                     /locus_tag="AB6V49_RS20925"
                     /old_locus_tag="AB6V49_20925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005410582.1"
                     /translation="MKIRPITTTLLAASLLLALAACKGPEAEQAKQDAQQAADSAGAA
                     ARDAVDKAAAATREAADKTAAASEQAAADTQQALDKAADATANAADKAKDAATDAAAH
                     ASDATADAAQKVADKARDVANDAKANAAKEEAKH"
     gene            complement(12191..13828)
                     /locus_tag="AB6V49_RS20930"
                     /old_locus_tag="AB6V49_20930"
     CDS             complement(12191..13828)
                     /locus_tag="AB6V49_RS20930"
                     /old_locus_tag="AB6V49_20930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482844.1"
                     /GO_function="GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="WP_076739751.1"
                     /translation="MSGPSFSSNAPFETHVVLNQPPPFAGRQLWTDDVALAEAVHREG
                     AGALAPRLAVYGALAGDELYRLGFDANRDRPQLRTHDAQGHRIDTVEFHPAYHQLMSA
                     AKQHGVAGLSWHEPQPGAHVARAALSYLHHQAEAGTSCPLTMTHAAVAVLQSQPHLAE
                     WARKAAAPVYDPRDVPVADKNGITLGMGMTEKQGGSDVRANSTRAEPIDGERYRLVGH
                     KWFFSAPMCDGFLVLAQAPGGLTCLLMPRRLADGDRNAFRLMRLKDKLGDWSNASSEV
                     EFCGAQAWRVGEEGRGVATIIGMVMMTRLDCMLGAAAEMRMALAQALHHARHRRTFGK
                     LLVEHSLMTNVLADLALESEAATVLAMRIARAVDRAGVDANEAAMARLGTALGKYWLC
                     KRAPAFVNEAQECLGGAGYVEESMLPRLYRQAPLNSIWEGSGNIQCLDVLRALAREPE
                     AMAALRGELASVADRDARYAAALQRWAAAPPPEEAQARLFCERTALLLQAALLLRARS
                     PMAEAFVRSRLEGEHGLAFGTLPAGLELTAMLARALP"
     gene            13942..14940
                     /locus_tag="AB6V49_RS20935"
                     /old_locus_tag="AB6V49_20935"
     CDS             13942..14940
                     /locus_tag="AB6V49_RS20935"
                     /old_locus_tag="AB6V49_20935"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="WP_005414211.1"
                     /translation="MEGNDDLVVLRPEGLYCAAGDFHIDPWRPVPRAVITHGHGDHAR
                     PGMGEYHCSEGSLPILRWRLGDVGVQAHAEGVPFRLGRVQVSLHPAGHVLGSSQVRID
                     DGERVWVASGDYKRQPDPTCTPFEVVPCDTFITEATFALPIYRWPDTPAVAAEIVAWR
                     RECEQRGEAAILLCYALGKAQRVLAELLPLDDRPAWLHGAIANGVSVYRQANIPMLET
                     LTVAEQGRQPDAAGQLILAPPSAAGTPWMRRFGPHQLGFASGWMQLRGNRRRRNVDRG
                     FVISDHADWPALLQTIEQTGAQRVIATHGNTDALIPFLRERGVAAEAFRTDFGSEE"
     gene            14937..16544
                     /locus_tag="AB6V49_RS20940"
                     /old_locus_tag="AB6V49_20940"
     CDS             14937..16544
                     /locus_tag="AB6V49_RS20940"
                     /old_locus_tag="AB6V49_20940"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300442.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA
                     ligase (ATP) activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence
                     IEA]; GO:0006281 - DNA repair [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="WP_099484530.1"
                     /translation="MKAFAALYQRLDRSTATLDKRAALVDYFRHAAAHDAAWALYLLS
                     GGKVGGARRRIAASGELRSWIAEESGLPAWLVEDSYAQVGDLAETLTLLLDDPLHPAA
                     DRPLSDWIEQHLLAVANQPEVVRRAAVVAGWRQLRSGERLVFNKLLTGALRVGVSQRL
                     VQQALAEWSGLDIARIAQRMLGEWVPSPGLLGQLLSPDELPLDRQQPYPFFLASPLEG
                     EPGERLGPVEDWLLEWKWDGIRLQLLRRRGEVALWSRGEERLDGRFPEIEQAAMALPD
                     GCVLDGELLAWDESDDLPRAFTALQTRIQRRKPGAATLRNTPVRVLAYDLLERDGEDL
                     RGLPLQQRRAQLAEVIGALGDTRIQLSPDVPAGDWLQAATLREAARERGVEGLMLKRR
                     TSAYQSGRRRGDWWKWKVDPLTIDAVLLYAQAGHGRRSTLYTDYTFGVWDGDTLVPVA
                     KAYSGLDDKEILALDRWIRANTRERFGPVRSVRAEQVFELGFEAVNRSSRHKSGIAVR
                     FPRILRWRHDKPAAEADQLATLQALAR"
     gene            16541..19000
                     /locus_tag="AB6V49_RS20945"
                     /old_locus_tag="AB6V49_20945"
     CDS             16541..19000
                     /locus_tag="AB6V49_RS20945"
                     /old_locus_tag="AB6V49_20945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038074.1"
                     /GO_function="GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA]; GO:0003676 - nucleic acid binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response DEXH box
                     helicase"
                     /protein_id="WP_114618679.1"
                     /translation="MNRRQALRRLEDWFAARGWRSLPFQRAMWRHYLAGDSGLLHTPT
                     GSGKTLAMFGGPLLQAMLDPPSAPRRASAVRPLQVLWVTPLRALASDTARALQAVVDG
                     LGLGWRVGLRSGDASNRERRQAREGRVDVLVTTPESLALLLSYPDTLPRMRQLRCVVV
                     DEWHELLGNKRGVLLQLNLAVLRDAAPSLQLWGLSATLGNLPQARDVLLPGQQDAPIV
                     QGVRPRAISVRSLLPEPGERFPWAGHLGLAQLPRVLDALMAVRSSLLFTNTRAQAELW
                     HQALAAVWPEDADTLALHHGSLDPALRQQVEDGLRAGALRCVVATSSLDLGVDFPEVE
                     QVLQLGSPKGVARLRQRAGRARHRPGAGGAIVCIPSHALELAEYAAVRRALHEGVVEA
                     RRPPTLSLDVLAQHAVSRALAGGFDSDALLAQVRRTHAFATLGDEQWRAVLDFIVQGG
                     QALAQYPDFHKVVRDADGSYRMHDRRQALRHRLSIGTISSDGSVRVQFLRGGGLGAVE
                     EQFASRLRRGDRFQFAGRLLELVQLRDMTAFVRRARGRGDGVVPRWQGGQLPLSMPLG
                     RELEWVLSGADDSAESRWLSPLLALQQQLSALPGPEHLLVEEVRRREGQFMFVYPFAG
                     RHVHEALAALLALRCTRQQRNSIGYAVNDHGLVLAPARPIDLDEAQWRALFGNDRLLA
                     DLREAVNLGELARRQFRGIARVAGLLVPSLPGGMPRSLRQLQASAGLLYDVLREHDPE
                     HLLLALAEHEVLYDSLDLPGVQQVLERIGTQQLSLQRPSSLTPLGFPLWAERLRGQFS
                     NEDWRVRVQRAAQQLERRHDR"
     gene            18990..19631
                     /gene="pdeM"
                     /locus_tag="AB6V49_RS20950"
                     /old_locus_tag="AB6V49_20950"
     CDS             18990..19631
                     /gene="pdeM"
                     /locus_tag="AB6V49_RS20950"
                     /old_locus_tag="AB6V49_20950"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410587.1"
                     /GO_function="GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="WP_114618678.1"
                     /translation="MTDELPLLLAGESVVLVGARALYWPARQALLIADLHLGKADVFR
                     RAGIALPSGGTGEDLQRLQRLLDLHACRELWILGDILHGPAHRAAWYRQWLGWRERNA
                     SLDVHVLRGNHDRQLPHAQLQVQIHDEVRLRPFLLRHEPMPDAALHVIAGHLHPQVAL
                     KPLRRRFPAFWLRDRMTVLPAFSAFTAGIVPAPARGEQMIACVESGLVELPVA"
     gene            complement(19633..19902)
                     /locus_tag="AB6V49_RS20955"
                     /old_locus_tag="AB6V49_20955"
     CDS             complement(19633..19902)
                     /locus_tag="AB6V49_RS20955"
                     /old_locus_tag="AB6V49_20955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005418216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024958257.1"
                     /translation="MLFAVEELESEICKLRGLLQMLHEDQPDVLEDVFEFHVGSLVSH
                     ASPEHHARIRTCAQEMLAAIQALPRRRENDTPDFQLMPQLGIGPA"
     gene            complement(20083..21351)
                     /locus_tag="AB6V49_RS20960"
                     /old_locus_tag="AB6V49_20960"
     CDS             complement(20083..21351)
                     /locus_tag="AB6V49_RS20960"
                     /old_locus_tag="AB6V49_20960"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="WP_114618709.1"
                     /translation="MTERLRIAVIGYGTAGQAVSILLTRDGHEVEIFERVPTPGPVGA
                     GFLLQPSGLQVLWQMGLLDAVRAHAAPVHRLYGDTPCERAVMDMRYDGLDARLHGLGM
                     QRGALFSLLDQARAGAGNLHAGVTIAAVDAEQGRLRDSEGRLHGPFDLVVAADGAAST
                     LRSTIAGGAGLDRVYPWGALWCLLPAEDWPHVQELRQRYVAARKMIGLLPVGTRPGDD
                     TPRLSFFWSLPRTDFERWQADGMTPWLDELHALWPQASARFAHLRDAGQLARAVYRDA
                     VMTRWHQGRMVLAGDAAHAMSPQLGQGVNMALLDALALRDAVRTHGGGAEALQAYQAQ
                     RRAHVAVYQRWSRWLTPLFQSDRDAWAKTRDVLLGPMGRLPGGRGHMLRVLSGTQQGW
                     FGSLTLDPAFIDALATTMEIPRSNAITAGA"
     gene            complement(21455..21661)
                     /locus_tag="AB6V49_RS20965"
                     /old_locus_tag="AB6V49_20965"
     CDS             complement(21455..21661)
                     /locus_tag="AB6V49_RS20965"
                     /old_locus_tag="AB6V49_20965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003488188.1"
                     /GO_component="GO:0005829 - cytosol [Evidence IEA]"
                     /GO_function="GO:0003676 - nucleic acid binding [Evidence
                     IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072
                     - transcription antitermination factor activity, RNA
                     binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="WP_005410590.1"
                     /translation="MPNGTVKWFNDAKGFGFISPEDGSADVFAHFSAINSKGFRSLQE
                     GQRVTYDVTQGPKGAQASNITPAE"
     gene            complement(21750..22496)
                     /locus_tag="AB6V49_RS20970"
                     /old_locus_tag="AB6V49_20970"
     CDS             complement(21750..22496)
                     /locus_tag="AB6V49_RS20970"
                     /old_locus_tag="AB6V49_20970"
                     /EC_number="2.4.2.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019662159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioinosine phosphorylase"
                     /protein_id="WP_005410591.1"
                     /translation="MQQIALAVIGGTGVYNLAKLDDVQTHEVDTRFGRPSGPVRVGTL
                     LGHRVAFLARHGEGHSLPPHKINYRANLAALQQLGAQRVLALNTVGGITENFGPRVLA
                     CPDQIIDYTWGRISTICEEEGTDVVHVDFGHPYTPMLRSKILAAAKVTGVTVHDGGCY
                     GATQGPRLETIAEIARMRRDGCDLVGMTGMPEAALARELGLDYACLAIIANWAAGCGD
                     GEEITMAEVLANVQAASNGLPELVGELARG"
     gene            complement(22579..23133)
                     /locus_tag="AB6V49_RS20975"
                     /old_locus_tag="AB6V49_20975"
     CDS             complement(22579..23133)
                     /locus_tag="AB6V49_RS20975"
                     /old_locus_tag="AB6V49_20975"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006449878.1"
                     /GO_process="GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="WP_005410592.1"
                     /translation="MPNLTISQALAQADLLVDRPTIDKAIAGIADAIARDYKGEVPLF
                     LSIMHGALPFAGQLALELGARGQDVQFDYLHATRYRGETTGGDLVWKHKPATSLFGRR
                     VLLVDDILDEGYTLQGVRTWCLEQGATDVRIAAMTVKKHDRALPDVTADYAGIELPDR
                     YVFGFGMDVNETLRCVPAIYAMKE"
     gene            complement(23133..24140)
                     /gene="nagZ"
                     /locus_tag="AB6V49_RS20980"
                     /old_locus_tag="AB6V49_20980"
     CDS             complement(23133..24140)
                     /gene="nagZ"
                     /locus_tag="AB6V49_RS20980"
                     /old_locus_tag="AB6V49_20980"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019336693.1"
                     /GO_function="GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="WP_005410593.1"
                     /translation="MLLIGVAGTELTAQERDWLQHDAVAGVVLFKRNFASRQQVTDLS
                     AAIRAAAPRPQLICVDQEGGRVQRFREGYSDLPPLQDIGALYATDPQQALALAERHAW
                     LMASEVRASGLDLSFAPVVDLGRGNRAIGNRAFSEDPQVVAAFTAAYVRGMHSVGMAA
                     TLKHFPGHGTVLEDTHVDTAIDPRALDELRAQDLVPFQAGIAAGADAVMMAHVIYPQI
                     APEPAGYSPRWIQDILRGELGFRGVVFSDDIGMAASHSAGGVPARVHAHLDAGCDVVL
                     VCHPELVDEALHAVQGRSLNTAALLGLIGRGALGWDGLLADARHGDTQSRLLETLGRT
                     V"
     gene            complement(24244..24939)
                     /locus_tag="AB6V49_RS20985"
                     /old_locus_tag="AB6V49_20985"
     CDS             complement(24244..24939)
                     /locus_tag="AB6V49_RS20985"
                     /old_locus_tag="AB6V49_20985"
                     /EC_number="1.8.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="WP_005414203.1"
                     /translation="MRIDIYSDVVCPWCWIGKHRFQQGVQLLGADAPELDIHWQPFQL
                     DPDADDTPVPLREAYVRKFGGVERTEQILGQTQTTARAEGLPMDFSRGQVRVTTLPAH
                     RVLWLAGQHGVQDAVGEALFRAHFELGQNLADSAVLIKAGVAGGLDGGEIAQMLASDR
                     GLAEVEAKLAEAHALGISSVPTFVIDGKWAISGAQPPEAFANALRQIAAEQGAPATPA
                     GDDEACGPDGCKV"
     gene            complement(25053..25538)
                     /locus_tag="AB6V49_RS20990"
                     /old_locus_tag="AB6V49_20990"
     CDS             complement(25053..25538)
                     /locus_tag="AB6V49_RS20990"
                     /old_locus_tag="AB6V49_20990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014647992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="WP_005414202.1"
                     /translation="MGIEIERKFLVINDGWRSAAHRVIPMAQGYINDMGALDRGTQNA
                     SVRVRIEGDHAALNLKSRTIGHTRQEFDYPIPVEDARALLALCVGGLIDKRRHLVEHA
                     GLTWEVDEFLGDNAGLVVAEVELDSADQAIQLPDWAGAEVTDDARYYNVALASHPYSQ
                     W"
     gene            complement(25573..26907)
                     /gene="rlmD"
                     /locus_tag="AB6V49_RS20995"
                     /old_locus_tag="AB6V49_20995"
     CDS             complement(25573..26907)
                     /gene="rlmD"
                     /locus_tag="AB6V49_RS20995"
                     /old_locus_tag="AB6V49_20995"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010380519.1"
                     /GO_function="GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006396 - RNA processing [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="WP_111198234.1"
                     /translation="MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGAL
                     PGEVVMAEQTARSRHFDEARTVEVLQASPQRVTPKCPHFGTCAGCVLQHLGEDQQIVA
                     KQRVLMDNLERIGHVKPGKVLAPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPR
                     FVADLSQCLTVIPEIGTKVEALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLS
                     DADRAAWAAFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAPWDVELAFRPLDFIQ
                     VNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVAR
                     ARENAVRNGLANAQFFSADLTQDQRSTPWMRQGFDKLLLDPPRSGAIEVLQQLPLKQF
                     KRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKR"
     gene            27035..27763
                     /locus_tag="AB6V49_RS21000"
                     /old_locus_tag="AB6V49_21000"
     CDS             27035..27763
                     /locus_tag="AB6V49_RS21000"
                     /old_locus_tag="AB6V49_21000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014647994.1"
                     /GO_process="GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="WP_005410597.1"
                     /translation="MQMTPRASRPRFLLVEDDIISRGFFKAALETLPADVDTADSLAS
                     ALASAEPGAHDLWLIDVNLPDGNGAQLLRELRRSHPDTPALAHTADGDTSIHARLREA
                     GFSDTLVKPLGRDQLLKAVRRALVNSPAGISVAPAPAAVELQVQDWDETAALAALNGQ
                     RNHLIALRELFLAELPGVRDAVEQAVDQHDERQLRSQLHRLQASCGFVGAARLGRAVR
                     QLHHAPESGQAQAGFRDAVAALLH"
CONTIG      join(JBFUOA010000098.1:1..28200)
//
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