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NCBI Reference Sequence: NZ_JBHZKR010000047.1
FASTA Graphics
LOCUS NZ_JBHZKR010000047 22075 bp DNA linear CON 06-NOV-2024 DEFINITION Escherichia coli strain ECOCDS025 47, whole genome shotgun sequence. ACCESSION NZ_JBHZKR010000047 NZ_JBHZKR010000000 VERSION NZ_JBHZKR010000047.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN44006554 Assembly: GCF_044467745.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 22075) AUTHORS Ramani,V.M. TITLE Direct Submission JOURNAL Submitted (01-OCT-2024) Dairy Microbiology, College of Dairy Science, Kamdhenu University, Amreli, Amreli-Rajkot Highway, Near Shedubhar Village, Amreli, Gujarat 365601, India COMMENT REFSEQ INFORMATION: The reference sequence is identical to JBHZKR010000047.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.15.5 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 203x Sequencing Technology :: Oxford Nanopore MinION ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_044467745.1-RS_2024_11_05 Annotation Date :: 11/05/2024 17:51:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,917 CDSs (total) :: 4,821 Genes (coding) :: 4,600 CDSs (with protein) :: 4,600 Genes (RNA) :: 96 rRNAs :: 1, 3, 5 (5S, 16S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 3, 5 (16S, 23S) tRNAs :: 77 ncRNAs :: 10 Pseudo Genes (total) :: 221 CDSs (without protein) :: 221 Pseudo Genes (ambiguous residues) :: 0 of 221 Pseudo Genes (frameshifted) :: 71 of 221 Pseudo Genes (incomplete) :: 146 of 221 Pseudo Genes (internal stop) :: 46 of 221 Pseudo Genes (multiple problems) :: 37 of 221 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..22075 /organism="Escherichia coli" /mol_type="genomic DNA" /strain="ECOCDS025" /isolation_source="Raw Milk" /db_xref="taxon:562" /geo_loc_name="India: Gujarat" /collection_date="2024-03-11" /collected_by="College of Dairy Science, Kamdhenu University, Amreli" gene complement(<1..192) /locus_tag="ACITCJ_RS21865" CDS complement(<1..192) /locus_tag="ACITCJ_RS21865" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_026224.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000015358.1" /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVT SGHPVNPLLGAKVLPGETDL" gene complement(352..564) /gene="rpmE" /locus_tag="ACITCJ_RS21870" CDS complement(352..564) /gene="rpmE" /locus_tag="ACITCJ_RS21870" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312890.1" /GO_component="GO:0005840 - ribosome [Evidence IEA]" /GO_function="GO:0003735 - structural constituent of ribosome [Evidence IEA]" /GO_process="GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L31" /protein_id="WP_000710769.1" /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF TGKQRDVATGGRVDRFNKRFNIPGSK" gene 767..2965 /gene="priA" /locus_tag="ACITCJ_RS21875" CDS 767..2965 /gene="priA" /locus_tag="ACITCJ_RS21875" /EC_number="3.6.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312889.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="primosomal protein N'" /protein_id="WP_001400571.1" /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL DLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPIS RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWVLGPVPALAPK RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG" gene 3121..4146 /gene="cytR" /locus_tag="ACITCJ_RS21880" CDS 3121..4146 /gene="cytR" /locus_tag="ACITCJ_RS21880" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312888.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CytR" /protein_id="WP_000644904.1" /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR GSTRALP" gene 4238..5197 /gene="ftsN" /locus_tag="ACITCJ_RS21885" CDS 4238..5197 /gene="ftsN" /locus_tag="ACITCJ_RS21885" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418368.1" /GO_function="GO:0042834 - peptidoglycan binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cell division protein FtsN" /protein_id="WP_000068828.1" /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPAHTT AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG" gene 5290..5820 /gene="hslV" /locus_tag="ACITCJ_RS21890" CDS 5290..5820 /gene="hslV" /locus_tag="ACITCJ_RS21890" /EC_number="3.4.25.2" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312886.1" /GO_component="GO:0009376 - HslUV protease complex [Evidence IEA]" /GO_function="GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]" /GO_process="GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ATP-dependent protease subunit HslV" /protein_id="WP_000208242.1" /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC IYTNHFHTIEELSYKA" gene 5830..7161 /gene="hslU" /locus_tag="ACITCJ_RS21895" CDS 5830..7161 /gene="hslU" /locus_tag="ACITCJ_RS21895" /EC_number="3.4.25.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1" /GO_component="GO:0009376 - HslUV protease complex [Evidence IEA]" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HslU--HslV peptidase ATPase subunit" /protein_id="WP_001293341.1" /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL" gene 7228..8154 /gene="menA" /locus_tag="ACITCJ_RS21900" CDS 7228..8154 /gene="menA" /locus_tag="ACITCJ_RS21900" /EC_number="2.5.1.74" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418365.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoate polyprenyltransferase" /protein_id="WP_000139496.1" /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL VALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIIT VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP VAMRPMLERTVKGALLTNLLFVLGIFLSQWAA" gene 8247..8732 /gene="rraA" /locus_tag="ACITCJ_RS21905" CDS 8247..8732 /gene="rraA" /locus_tag="ACITCJ_RS21905" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1" /GO_function="GO:0008428 - ribonuclease inhibitor activity [Evidence IEA]" /GO_process="GO:0051252 - regulation of RNA metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ribonuclease E activity regulator RraA" /protein_id="WP_000872908.1" /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI E" gene complement(8817..9062) /gene="zapB" /locus_tag="ACITCJ_RS21910" CDS complement(8817..9062) /gene="zapB" /locus_tag="ACITCJ_RS21910" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418363.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="septal ring assembly protein ZapB" /protein_id="WP_001296623.1" /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV" gene 9487..10332 /gene="glpF" /locus_tag="ACITCJ_RS21915" CDS 9487..10332 /gene="glpF" /locus_tag="ACITCJ_RS21915" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312879.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycerol uptake facilitator protein GlpF" /protein_id="WP_000084268.1" /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEI SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSE QKASL" gene 10355..11863 /gene="glpK" /locus_tag="ACITCJ_RS21920" CDS 10355..11863 /gene="glpK" /locus_tag="ACITCJ_RS21920" /EC_number="2.7.1.30" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312878.1" /GO_function="GO:0004370 - glycerol kinase activity [Evidence IEA]" /GO_process="GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycerol kinase GlpK" /protein_id="WP_000136788.1" /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE" gene 11998..13008 /gene="glpX" /locus_tag="ACITCJ_RS21925" CDS 11998..13008 /gene="glpX" /locus_tag="ACITCJ_RS21925" /EC_number="3.1.3.11" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418360.1" /GO_function="GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]" /GO_process="GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006071 - glycerol metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="class II fructose-bisphosphatase" /protein_id="WP_001250644.1" /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH IL" gene 13105..13851 /gene="fpr" /locus_tag="ACITCJ_RS21930" CDS 13105..13851 /gene="fpr" /locus_tag="ACITCJ_RS21930" /EC_number="1.18.1.2" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418359.1" /GO_function="GO:0004324 - ferredoxin-NADP+ reductase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ferredoxin--NADP(+) reductase" /protein_id="WP_000796332.1" /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE VPHCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMV RDTQQLLKETRQMTKHLRRRPGHMTAEHYW" gene complement(13856..14284) /gene="uspD" /locus_tag="ACITCJ_RS21935" CDS complement(13856..14284) /gene="uspD" /locus_tag="ACITCJ_RS21935" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418358.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="universal stress protein UspD" /protein_id="WP_000323556.1" /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK" gene complement(14311..14610) /locus_tag="ACITCJ_RS21940" CDS complement(14311..14610) /locus_tag="ACITCJ_RS21940" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418357.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF406 domain-containing protein" /protein_id="WP_000655989.1" /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM TKLKELAAATSSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA" gene complement(14822..15262) /locus_tag="ACITCJ_RS21945" CDS complement(14822..15262) /locus_tag="ACITCJ_RS21945" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312873.1" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF805 domain-containing protein" /protein_id="WP_000155257.1" /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG RFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN" gene 15363..15962 /locus_tag="ACITCJ_RS21950" CDS 15363..15962 /locus_tag="ACITCJ_RS21950" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312872.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YiiQ family protein" /protein_id="WP_000802214.1" /translation="MKPGCTLFFLLCSALTVTTAAHAQTPDTATTAPYLLAGAPTFDL SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK" gene 16070..16837 /gene="tpiA" /locus_tag="ACITCJ_RS21955" CDS 16070..16837 /gene="tpiA" /locus_tag="ACITCJ_RS21955" /EC_number="5.3.1.1" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312871.1" /GO_function="GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]" /GO_process="GO:0006096 - glycolytic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="triose-phosphate isomerase" /protein_id="WP_001216325.1" /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA" gene complement(16892..17647) /gene="cdh" /locus_tag="ACITCJ_RS21960" CDS complement(16892..17647) /gene="cdh" /locus_tag="ACITCJ_RS21960" /EC_number="3.6.1.26" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312870.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0008715 - CDP-diacylglycerol diphosphatase activity [Evidence IEA]" /GO_process="GO:0008654 - phospholipid biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol diphosphatase" /protein_id="WP_001351967.1" /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQS DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR" gene complement(17754..18743) /gene="sbp" /locus_tag="ACITCJ_RS21965" CDS complement(17754..18743) /gene="sbp" /locus_tag="ACITCJ_RS21965" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005133064.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sulfate/thiosulfate ABC transporter substrate-binding protein Sbp" /protein_id="WP_224466067.1" /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS AHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAESYLKYLYSPEGQEIAAK NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR" gene complement(19063..20025) /gene="pfkA" /locus_tag="ACITCJ_RS21970" CDS complement(19063..20025) /gene="pfkA" /locus_tag="ACITCJ_RS21970" /EC_number="2.7.1.11" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /GO_process="GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="WP_000591795.1" /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" gene complement(20206..21108) /gene="fieF" /locus_tag="ACITCJ_RS21975" CDS complement(20206..21108) /gene="fieF" /locus_tag="ACITCJ_RS21975" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312867.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]" /note="FieF, a metal efflux transporter, is a member of the CDF (cation diffusion facilitator) family of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="CDF family cation-efflux transporter FieF" /protein_id="WP_001076742.1" /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI QHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP GSDVIIHQDPCSVVPREGKRSMLS" gene complement(21316..21957) /locus_tag="ACITCJ_RS21980" CDS complement(21316..21957) /locus_tag="ACITCJ_RS21980" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000416606.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000416606.1" /translation="MEKVIIELDNRWELADFAVLTKEYLQLYGFFYGLKGGSRGYSTM PWEGGHSVVNFFRGAYSATPPDLRPVVKKIQYASPGFIELSALIDISWQIAELVTAVG GSILAANKVYDQVMRTYRQREWAKLKSEKLRIQNQIKEIELVSDAVKSLESVMALSEE QRKNLVQLSGADELVQLKILLAVYRRLSPLVELQNSGKANFSAGKNKNLKASD" CONTIG join(JBHZKR010000047.1:1..22075) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
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