U.S. flag

An official website of the United States government

Pseudoalteromonas sp. S3431 contig0159, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JJNY01000155.1

FASTA Graphics 

LOCUS       NZ_JJNY01000155         2136 bp    DNA     linear   CON 15-FEB-2024
DEFINITION  Pseudoalteromonas sp. S3431 contig0159, whole genome shotgun
            sequence.
ACCESSION   NZ_JJNY01000155 NZ_JJNY01000000
VERSION     NZ_JJNY01000155.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708826
            Assembly: GCF_000690035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudoalteromonas sp. S3431
  ORGANISM  Pseudoalteromonas sp. S3431
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Machado,H.R., Gram,L. and Vynne,N.G.
  TITLE     Pseudoalteromonas galatheae sp. nov., isolated from a deep-sea
            polychaete near Canal Concepcion, Chile
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Machado,H.R., Gram,L. and Vynne,N.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2014) Department of Systems Biology, Technical
            University of Denmark, Matematiktorvet, Building 301, Kgs. Lyngby
            DK-2800, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJNY01000155.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2014
            Assembly Method        :: CLC NGS Cell v. 7
            Assembly Name          :: Pgalathea
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 130.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/15/2024 02:29:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,721
            CDSs (total)                      :: 3,625
            Genes (coding)                    :: 3,595
            CDSs (with protein)               :: 3,595
            Genes (RNA)                       :: 96
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 6 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 7 of 30
            Pseudo Genes (multiple problems)  :: 7 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Pseudoalteromonas sp. S3431"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig0159"
                     /strain="S3431"
                     /isolation_source="deep-sea polychaete"
                     /db_xref="taxon:579537"
                     /geo_loc_name="Chile: Canal Concepcion"
                     /lat_lon="50.4498 S 74.8912 W"
                     /collection_date="2007-02-03"
     gene            222..1931
                     /locus_tag="DO88_RS00030"
                     /old_locus_tag="DO88_19090"
     CDS             222..1931
                     /locus_tag="DO88_RS00030"
                     /old_locus_tag="DO88_19090"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008134721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="WP_033041286.1"
                     /translation="MISIDKVIAANLPQLEKSPKVKGLVKKGLGYLLHEQEFVAFGDA
                     YPHLQGLEFVEQVLDELDFDTRYKPKQIEHIPNEGKLVIVANHPIGSLDALALIKVLS
                     TVRQDLKVVANRMLMSVTPMHELLLPVDNLSGTSKKQELNNIHQHLKNEGALLIFPAG
                     EVSRLSPTGIKDCKWNSGFLRMAKKANCPILPVFIKAKNSPLFYGTSMIYKPLASLLL
                     VKEMFKQRQKSLEFEIGASIPPESYLIENLKDKEVVNLIRKQLYRLTSKKPLPLKTQM
                     PLAIPECRKELKKAIDQCQLLGKTIDDMHIHLYQYTGSSAVFRELGRLREIAFRAVGE
                     GSGKRRDIDKYDMDYQHLVLWDPTQLELVGAYRLACAQDIIKKHGRKGLYTDSLFSYT
                     EAMTPYLHQGIELGRSFVQPKYWGRKSLDYLWYGIGAFIKNYPQYRYLFGAVTVPNTL
                     PEQAKAMLVYYYQHYYKNNVQLAMPNNEFRLSDQQLTQCQTVFSGNNVKEDFVELKHV
                     LANMGAQVPTLFKQYTELCMPGGVQFLSFSIDPDFNNCIDGLVLVDLESVKENKAKRY
                     LKK"
CONTIG      join(JJNY01000155.1:1..2136)
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.