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Streptococcus sp. HMSC034F03 Scaffold179, whole genome shotgun sequence

NCBI Reference Sequence: NZ_KV837500.1

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LOCUS       NZ_KV837500             2318 bp    DNA     linear   CON 10-SEP-2024
DEFINITION  Streptococcus sp. HMSC034F03 Scaffold179, whole genome shotgun
            sequence.
ACCESSION   NZ_KV837500 NZ_LTYL01000000
VERSION     NZ_KV837500.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04498675
            Assembly: GCF_001838535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus sp. HMSC034F03
  ORGANISM  Streptococcus sp. HMSC034F03
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R.,
            Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A.,
            Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2016) McDonnell Genome Institute, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            KV837500.1.
            The WUSC is a large strain collection isolated from clinical
            samples. Each sample is associated with metadata, including source,
            isolation site, 16s rRNA, metabolic, and other phenotypic
            information. The goal is to sample an adequate number of important,
            yet minor species, further adding to the catelogue of sequenced
            bacterial genomes and improving the diversity of the genomes
            available to the public. WGS will be preformed on approximely 550
            isolates. Samples were selected based on RDP analysis at the genus
            level. This is a reference genomes for the Human Microbiome Project
            and the work was funded by the National Institutes of Health (NIH)
            grant U54 HG004968.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.1.06
            Genome Coverage       :: 118x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001838535.1-RS_2024_09_10
            Annotation Date                   :: 09/10/2024 01:24:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,131
            CDSs (total)                      :: 2,085
            Genes (coding)                    :: 1,941
            CDSs (with protein)               :: 1,941
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 67 of 144
            Pseudo Genes (incomplete)         :: 66 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 31 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Streptococcus sp. HMSC034F03"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Scaffold179"
                     /strain="HMSC034F03"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="HMP:2783"
                     /db_xref="taxon:1739287"
     gene            106..>2318
                     /locus_tag="HMPREF2783_RS09955"
                     /old_locus_tag="HMPREF2783_09960"
                     /pseudo
     CDS             106..>2318
                     /locus_tag="HMPREF2783_RS09955"
                     /old_locus_tag="HMPREF2783_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014712658.1"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
CONTIG      join(LTYL01000035.1:1..2318)
//
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