Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_KV837500.1
FASTA Graphics
LOCUS NZ_KV837500 2318 bp DNA linear CON 10-SEP-2024 DEFINITION Streptococcus sp. HMSC034F03 Scaffold179, whole genome shotgun sequence. ACCESSION NZ_KV837500 NZ_LTYL01000000 VERSION NZ_KV837500.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN04498675 Assembly: GCF_001838535.1 KEYWORDS WGS; RefSeq. SOURCE Streptococcus sp. HMSC034F03 ORGANISM Streptococcus sp. HMSC034F03 Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus. REFERENCE 1 (bases 1 to 2318) AUTHORS Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R., Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A., Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (09-FEB-2016) McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to KV837500.1. The WUSC is a large strain collection isolated from clinical samples. Each sample is associated with metadata, including source, isolation site, 16s rRNA, metabolic, and other phenotypic information. The goal is to sample an adequate number of important, yet minor species, further adding to the catelogue of sequenced bacterial genomes and improving the diversity of the genomes available to the public. WGS will be preformed on approximely 550 isolates. Samples were selected based on RDP analysis at the genus level. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.1.06 Genome Coverage :: 118x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_001838535.1-RS_2024_09_10 Annotation Date :: 09/10/2024 01:24:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,131 CDSs (total) :: 2,085 Genes (coding) :: 1,941 CDSs (with protein) :: 1,941 Genes (RNA) :: 46 rRNAs :: 1, 2, 2 (5S, 16S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 2, 2 (16S, 23S) tRNAs :: 38 ncRNAs :: 3 Pseudo Genes (total) :: 144 CDSs (without protein) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 67 of 144 Pseudo Genes (incomplete) :: 66 of 144 Pseudo Genes (internal stop) :: 48 of 144 Pseudo Genes (multiple problems) :: 31 of 144 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2318 /organism="Streptococcus sp. HMSC034F03" /mol_type="genomic DNA" /submitter_seqid="Scaffold179" /strain="HMSC034F03" /isolation_source="urine" /host="Homo sapiens" /db_xref="HMP:2783" /db_xref="taxon:1739287" gene 106..>2318 /locus_tag="HMPREF2783_RS09955" /old_locus_tag="HMPREF2783_09960" /pseudo CDS 106..>2318 /locus_tag="HMPREF2783_RS09955" /old_locus_tag="HMPREF2783_09960" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014712658.1" /note="incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" CONTIG join(LTYL01000035.1:1..2318) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on