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NCBI Reference Sequence: NZ_LNHM01000048.1
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LOCUS NZ_LNHM01000048 705 bp DNA linear CON 01-MAY-2024 DEFINITION Enterobacter sp. 50588862 contig6, whole genome shotgun sequence. ACCESSION NZ_LNHM01000048 NZ_LNHM01000000 VERSION NZ_LNHM01000048.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN04158295 Assembly: GCF_001462935.1 KEYWORDS WGS; RefSeq. SOURCE Enterobacter sp. 50588862 ORGANISM Enterobacter sp. 50588862 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter. REFERENCE 1 (bases 1 to 705) AUTHORS Samuelsen,O., Overballe-Petersen,S., Bjornholt,J.V., Brisse,S., Doumith,M., Woodford,N., Hopkins,K.L., Aasnaes,B., Haldorsen,B. and Sundsfjord,A. CONSRTM Norwegian Study Group on CPE TITLE Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014 JOURNAL PLoS One 12 (11), e0187832 (2017) PUBMED 29141051 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 705) AUTHORS Samuelsen,O. TITLE Direct Submission JOURNAL Submitted (10-NOV-2015) University Hospital of North Norway, Dept. of Microbiology and Infection Control, Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Sykehusveien 1, Tromso 9038, Norway COMMENT REFSEQ INFORMATION: The reference sequence is identical to LNHM01000048.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: OCT-2015 Assembly Method :: iMetAMOS-SPAdes v. 1.5rc3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 253.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_001462935.1-RS_2024_05_01 Annotation Date :: 05/01/2024 02:12:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,648 CDSs (total) :: 4,519 Genes (coding) :: 4,461 CDSs (with protein) :: 4,461 Genes (RNA) :: 129 rRNAs :: 13, 9, 17 (5S, 16S, 23S) complete rRNAs :: 9, 1 (5S, 16S) partial rRNAs :: 4, 8, 17 (5S, 16S, 23S) tRNAs :: 81 ncRNAs :: 9 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 18 of 58 Pseudo Genes (incomplete) :: 38 of 58 Pseudo Genes (internal stop) :: 10 of 58 Pseudo Genes (multiple problems) :: 7 of 58 Pseudo Genes (short protein) :: 1 of 58 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..705 /organism="Enterobacter sp. 50588862" /mol_type="genomic DNA" /submitter_seqid="contig6" /strain="50588862" /isolation_source="Urine" /host="Homo sapiens" /db_xref="taxon:1736698" /geo_loc_name="Norway" /collection_date="2012" /collected_by="Norwegian National Advisory Unit on Detection of Antimicrobial Resistance" gene complement(13..>705) /locus_tag="APT89_RS21775" /old_locus_tag="APT89_00605" rRNA complement(13..>705) /locus_tag="APT89_RS21775" /old_locus_tag="APT89_00605" /product="23S ribosomal RNA" /inference="COORDINATES: nucleotide motif:Rfam:14.4:RF02541" /inference="COORDINATES: profile:INFERNAL:1.1.5" /note="Derived by automated computational analysis using gene prediction method: cmsearch." /db_xref="RFAM:RF02541" CONTIG join(LNHM01000048.1:1..705) //
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