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Enterobacter sp. 50588862 contig6, whole genome shotgun sequence

NCBI Reference Sequence: NZ_LNHM01000048.1

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LOCUS       NZ_LNHM01000048          705 bp    DNA     linear   CON 01-MAY-2024
DEFINITION  Enterobacter sp. 50588862 contig6, whole genome shotgun sequence.
ACCESSION   NZ_LNHM01000048 NZ_LNHM01000000
VERSION     NZ_LNHM01000048.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04158295
            Assembly: GCF_001462935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter sp. 50588862
  ORGANISM  Enterobacter sp. 50588862
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Samuelsen,O., Overballe-Petersen,S., Bjornholt,J.V., Brisse,S.,
            Doumith,M., Woodford,N., Hopkins,K.L., Aasnaes,B., Haldorsen,B. and
            Sundsfjord,A.
  CONSRTM   Norwegian Study Group on CPE
  TITLE     Molecular and epidemiological characterization of
            carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014
  JOURNAL   PLoS One 12 (11), e0187832 (2017)
   PUBMED   29141051
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Samuelsen,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2015) University Hospital of North Norway, Dept.
            of Microbiology and Infection Control, Norwegian National Advisory
            Unit on Detection of Antimicrobial Resistance, Sykehusveien 1,
            Tromso 9038, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LNHM01000048.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2015
            Assembly Method        :: iMetAMOS-SPAdes v. 1.5rc3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 253.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001462935.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 02:12:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,648
            CDSs (total)                      :: 4,519
            Genes (coding)                    :: 4,461
            CDSs (with protein)               :: 4,461
            Genes (RNA)                       :: 129
            rRNAs                             :: 13, 9, 17 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 1 (5S, 16S)
            partial rRNAs                     :: 4, 8, 17 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 18 of 58
            Pseudo Genes (incomplete)         :: 38 of 58
            Pseudo Genes (internal stop)      :: 10 of 58
            Pseudo Genes (multiple problems)  :: 7 of 58
            Pseudo Genes (short protein)      :: 1 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Enterobacter sp. 50588862"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig6"
                     /strain="50588862"
                     /isolation_source="Urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1736698"
                     /geo_loc_name="Norway"
                     /collection_date="2012"
                     /collected_by="Norwegian National Advisory Unit on
                     Detection of Antimicrobial Resistance"
     gene            complement(13..>705)
                     /locus_tag="APT89_RS21775"
                     /old_locus_tag="APT89_00605"
     rRNA            complement(13..>705)
                     /locus_tag="APT89_RS21775"
                     /old_locus_tag="APT89_00605"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
CONTIG      join(LNHM01000048.1:1..705)
//
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