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Escherichia coli strain CVAST1327 NODE_37_length_25565_cov_28.2384, whole genome shotgun sequence

NCBI Reference Sequence: NZ_NFSV01000037.1

FASTA Graphics 

LOCUS       NZ_NFSV01000037        25565 bp    DNA     linear   CON 09-JUL-2024
DEFINITION  Escherichia coli strain CVAST1327 NODE_37_length_25565_cov_28.2384,
            whole genome shotgun sequence.
ACCESSION   NZ_NFSV01000037 NZ_NFSV01000000
VERSION     NZ_NFSV01000037.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06806412
            Assembly: GCF_003317385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 25565)
  AUTHORS   Johnson,T.J. and Johnson,J.R.
  TITLE     Within host evolution of Escherichia coli isolates within the fecal
            flora of colonized patients
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 25565)
  AUTHORS   Johnson,T.J. and Johnson,J.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2017) Veterinary and Biomedical Sciences,
            University of Minnesota, 1971 Commonwealth Ave, 205 Veterinary
            Science, St Paul, MN 55108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NFSV01000037.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003317385.1-RS_2024_07_09
            Annotation Date                   :: 07/09/2024 04:23:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,173
            CDSs (total)                      :: 5,067
            Genes (coding)                    :: 4,855
            CDSs (with protein)               :: 4,855
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 9, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8 (16S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 212
            CDSs (without protein)            :: 212
            Pseudo Genes (ambiguous residues) :: 0 of 212
            Pseudo Genes (frameshifted)       :: 74 of 212
            Pseudo Genes (incomplete)         :: 160 of 212
            Pseudo Genes (internal stop)      :: 42 of 212
            Pseudo Genes (multiple problems)  :: 55 of 212
            Pseudo Genes (short protein)      :: 1 of 212
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25565
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_37_length_25565_cov_28.2384"
                     /strain="CVAST1327"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /geo_loc_name="USA: Minnesota"
                     /lat_lon="46.73 N 94.69 W"
                     /collection_date="2016"
                     /collected_by="VA Medical Center, Minneapolis"
     gene            <1..223
                     /locus_tag="B9N25_RS28530"
     CDS             <1..223
                     /locus_tag="B9N25_RS28530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_213160234.1"
                     /translation="VPAYGPQNDVTLKMPAFEWVHVQLHQQKGMISLSPPTICNSALW
                     DALRMNMMISYQELVRTFLNRTTPVNIFK"
     gene            complement(250..993)
                     /gene="traF"
                     /locus_tag="B9N25_RS24800"
                     /old_locus_tag="B9N25_24730"
     CDS             complement(250..993)
                     /gene="traF"
                     /locus_tag="B9N25_RS24800"
                     /old_locus_tag="B9N25_24730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TraF"
                     /protein_id="WP_001030401.1"
                     /translation="MNKALLPLLLCCFIFPASGKDAGWQWYNEKISPKEKENKPVPAA
                     PRQEPDIMQKLAALQTATKRALYEAILYPGVDNFVKYFRLQNYWTQQAGLFTMSAKKA
                     MLAHPELDYNLQYSHYNGTVRNQLAADQAQQRQAIAKLAEYYGIMFFYRGQDPIDGQL
                     AQVINGFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPAMMLVDPKQGS
                     VRPLSYGFISQDDLAKQFLNVSEDFKPKF"
     gene            complement(986..1243)
                     /locus_tag="B9N25_RS24805"
                     /old_locus_tag="B9N25_24735"
     CDS             complement(986..1243)
                     /locus_tag="B9N25_RS24805"
                     /old_locus_tag="B9N25_24735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000864342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="WP_000864347.1"
                     /translation="MKVIFTSNRLVDFLIRLLITAIVISPVIIWSWDTVKETTADGML
                     AAAFVILYSGVLLFILYFCFSALTGLQKADERKNDERNEDE"
     gene            complement(1270..3120)
                     /gene="traN"
                     /locus_tag="B9N25_RS24810"
                     /old_locus_tag="B9N25_24740"
     CDS             complement(1270..3120)
                     /gene="traN"
                     /locus_tag="B9N25_RS24810"
                     /old_locus_tag="B9N25_24740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system mating-pair
                     stabilization protein TraN"
                     /protein_id="WP_000821866.1"
                     /translation="MKRILPLILALVTGMAQADSNSDYRAGSDFAHQIKGQGSSSIQG
                     FKPQESIPGYNANPDETKYYGGVTAGGDGGLKNDGTTEWATGETGKTITESFMNKPKD
                     ILSPDAPFIQTGRDVVNRADSIVGNTGQQCSAQQINRSEFTNYTCERDTMVEEYCSRT
                     ASITGDWKYTDEYREVTIPHSQFRFSMNGLKLVFSVTVPVAGTVESASLSVHAGLYFL
                     NSRYDFMNTTFNVQLVTGQSGTFTIPVPSGFSVTQGQVLTGSGCTANGNCLPHGNGDR
                     KVYESLVSGASTFTLKLRMKVRDKEWVPRVEWVESCPFNKADGVLKGTECSEPGGTKT
                     GVMEGKPWSITQACWAYRDKYVTQSADNGTCQKYVDNPACTLASRQCAFYSDEGTCLH
                     EYATYSCESKTSGKVMVCGGDVFCLDGECDKAQSGKSSDFGEAVSQLAALAAAGKDVA
                     ALNGVDVRAFTGEAKFCRKAAAGFSNCCKDGGWGQDVGLAKCNSEEKALGKAKDNKLT
                     VSVGEFCSKKVLGVCLQKKRSYCQFDSKLAQIVQQQGRNGQLRIGFGSAKHPDCRGIT
                     VDELQKIQFDRLDFTNFYEDLMNNQKIPDSGVLTQKVKEQIADQLKQAGQ"
     gene            complement(3117..3755)
                     /gene="trbC"
                     /locus_tag="B9N25_RS24815"
                     /old_locus_tag="B9N25_24745"
     CDS             complement(3117..3755)
                     /gene="trbC"
                     /locus_tag="B9N25_RS24815"
                     /old_locus_tag="B9N25_24745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TrbC"
                     /protein_id="WP_001080259.1"
                     /translation="MNRKIFALFALTAGMHLAVHASENVNTTENRQFLKQQETLSQQL
                     REKPDIQLQAWAEQQVRANPLQHSDNQFLDELVRKQQAAQKDKPQQGAVYFVSFSIPE
                     EGLKRMLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGI
                     RSVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKGDSGK"
     gene            complement(3764..4069)
                     /locus_tag="B9N25_RS24820"
                     /old_locus_tag="B9N25_24750"
     CDS             complement(3764..4069)
                     /locus_tag="B9N25_RS24820"
                     /old_locus_tag="B9N25_24750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000224413.1"
                     /translation="MATMDSKYIQHLRKIGAVLLRLISRTLNLFPFGLVMVPVILFYF
                     APDSFLAEIIHEWKKADISEQVTLVRLYLKVTFTCVFMAVFLNYLFSDEFMPVNSRK"
     gene            complement(4099..5091)
                     /gene="traU"
                     /locus_tag="B9N25_RS24825"
                     /old_locus_tag="B9N25_24755"
     CDS             complement(4099..5091)
                     /gene="traU"
                     /locus_tag="B9N25_RS24825"
                     /old_locus_tag="B9N25_24755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus assembly protein TraU"
                     /protein_id="WP_000830190.1"
                     /translation="MKRRLWLLMLFLLAGHVPAASADSACEGRFVNPITDICWSCIFP
                     LSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCM
                     VNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDLD
                     IAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGS
                     QGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILP
                     KERWRYQMVNMYPDSGQCHPFGRSVMRWETGKNPPNTKKNFGYLMWRKRNCVFL"
     gene            complement(5088..5720)
                     /gene="traW"
                     /locus_tag="B9N25_RS24830"
                     /old_locus_tag="B9N25_24760"
     CDS             complement(5088..5720)
                     /gene="traW"
                     /locus_tag="B9N25_RS24830"
                     /old_locus_tag="B9N25_24760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system protein TraW"
                     /protein_id="WP_001203727.1"
                     /translation="MRCRGLIALLIWGQSVAAADLGTWGDLWPVKEPDMLTVIMQRLT
                     ALEQSGEMGRKMDAFKERVIRNSLRPPAVPGIGRTEKYSSRLFDPSVRLAADIRDNEG
                     RVFARQGEVMNPLQYVPFNQTLYFINGDDPAQVAWMKRQTPPTLESKIILVQGSIPEM
                     QKALDSRIYFDQNGVLCQRLGIDQVPARVSAVPGDRFLKVEFIPAEEGRK"
     gene            complement(5717..6103)
                     /gene="trbI"
                     /locus_tag="B9N25_RS24835"
                     /old_locus_tag="B9N25_24765"
     CDS             complement(5717..6103)
                     /gene="trbI"
                     /locus_tag="B9N25_RS24835"
                     /old_locus_tag="B9N25_24765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system protein TrbI"
                     /protein_id="WP_000214084.1"
                     /translation="MTTTQKTTDVTAPRRSHWWWTVPGCLAMVLLNAAVSYGIVRLNA
                     PVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVS
                     PAVVQGAPDITREIQQDIARRMRAEP"
     gene            complement(6100..8727)
                     /gene="traC"
                     /locus_tag="B9N25_RS24840"
                     /old_locus_tag="B9N25_24770"
     CDS             complement(6100..8727)
                     /gene="traC"
                     /locus_tag="B9N25_RS24840"
                     /old_locus_tag="B9N25_24770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001064255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein TraC"
                     /protein_id="WP_001064258.1"
                     /translation="MNNPLEAVTQAVNSLVTALKLPDESAKANEVLGEMSFPQFSRLL
                     PYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGVPFCIHLKS
                     SQLVGDRIEYGLREFSWSGEQAERFNAITRAYYMNAAATQFPLPEGMNLPLTLRHYRV
                     FFSYCSPSKKKSRADILEMENLVKIIRASLQGASIATQTVDAQAFIDIVGEMINHNPD
                     SLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFHLARNPE
                     IAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSY
                     AKWFPSVEKEAKEWGELRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFR
                     KNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANLMPLVADNP
                     LTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGG
                     FAVVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNG
                     NLDEVHEGLLLQAVRASWLAKENRARIDDVVDFLKNASDSEQYAGSPTIRSRLDEMIV
                     LLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRM
                     YRTPRNLKKLNVIDEGWRLLDFKNYKVGEFIEKGYRTARRHTGAYITITQNIVDFDSD
                     KASSAARAAWGNSSYKIILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAARDQWFSS
                     FLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEGLSIHEAVWQLAWKKSGP
                     EMASLEAWLEEHEKYRSVA"
     gene            complement(8887..9108)
                     /gene="traR"
                     /locus_tag="B9N25_RS24845"
                     /old_locus_tag="B9N25_24775"
     CDS             complement(8887..9108)
                     /gene="traR"
                     /locus_tag="B9N25_RS24845"
                     /old_locus_tag="B9N25_24775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraR"
                     /protein_id="WP_001278694.1"
                     /translation="MSDEADEAYSVTEQLTMTGINRIRQKINVHGIPVYLCEACGNPI
                     PEARRKIFPGVTLCVECQAYQEKQRKHYA"
     gene            complement(9243..9758)
                     /gene="traV"
                     /locus_tag="B9N25_RS24850"
                     /old_locus_tag="B9N25_24780"
     CDS             complement(9243..9758)
                     /gene="traV"
                     /locus_tag="B9N25_RS24850"
                     /old_locus_tag="B9N25_24780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system lipoprotein
                     TraV"
                     /protein_id="WP_000809886.1"
                     /translation="MKQISLFIPLLGTLLLSGCAGTSTEFECNATTSDTCMTMEQANE
                     KAKELEQSSEAKPVAASLPRLAEGNFRTMPVQTVTATPPSGSRPAVTALPEQKLLAPR
                     PLFTAAREVKTIVPVSSVAPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVI
                     KPSAWGKPRIN"
     gene            complement(9758..10069)
                     /locus_tag="B9N25_RS24855"
                     /old_locus_tag="B9N25_24785"
     CDS             complement(9758..10069)
                     /locus_tag="B9N25_RS24855"
                     /old_locus_tag="B9N25_24785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001057281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbD"
                     /protein_id="WP_001057272.1"
                     /translation="MNMRNIITARSVPDKSVSDDFMNAVLSNCTTRIVLPALKEFGSE
                     SLPHNFNMAAVGVMKKGMSMSLFSSPGNTVVSGQPCAGKTNLTVELISAVVESNKKGE
                     G"
     gene            complement(10056..10622)
                     /gene="traP"
                     /locus_tag="B9N25_RS24860"
                     /old_locus_tag="B9N25_24790"
     CDS             complement(10056..10622)
                     /gene="traP"
                     /locus_tag="B9N25_RS24860"
                     /old_locus_tag="B9N25_24790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000896598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus-stabilizing protein
                     TraP"
                     /protein_id="WP_001617877.1"
                     /translation="MAGDALTFRVAFVVRWLLWVVRFVVIWPLATMALMALFVLWKDN
                     TTLGKLLVKEINFVRQTAPAGQFPVSECWFSSSDSSGRSEIQDICHYRAADAADYVRE
                     TDRSLMQLVTAFWATLALMYVSLAAITGKYPVRPGKMKCVRVGTADEHLKEVYTEDTS
                     LSEKIRKCHVYFPDDRANRNNGDKNEHA"
     gene            complement(10612..12063)
                     /gene="traB"
                     /locus_tag="B9N25_RS24865"
                     /old_locus_tag="B9N25_24795"
     CDS             complement(10612..12063)
                     /gene="traB"
                     /locus_tag="B9N25_RS24865"
                     /old_locus_tag="B9N25_24795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000146653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F-type conjugal transfer pilus assembly protein
                     TraB"
                     /protein_id="WP_000146687.1"
                     /translation="MASINTIVKRKQYLWLGIVVVGTASAIGGALYLSDVDMSGNGET
                     VAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDD
                     QRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQTPASPPGPEGEPQPGNTPVSFPP
                     QGSVAVPPPTAFYPGNGVTPPPQVMYQSVPVPNRIQRKVFTRNEGKQGPSLPYIPSGS
                     FAKAMLIEGADANASVTGNESTVPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSS
                     ERAIVRTRNISCLKNGKTIDMPIKGHVSFRGKNGIKGEVVMRNGKILGWAWGAGFVDG
                     IGQGMERASQPAVGLGATAAYGAGDVLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIP
                     IGAGNEVTVVFQDGFQLKTVEEMALEQSQSTAEEGNPESPVPNPPSAESHLNGFNTDQ
                     MLKQLGNLNPQQFMSGDKNPQGGDAGKEGGNGG"
     gene            complement(12063..12791)
                     /gene="traK"
                     /locus_tag="B9N25_RS24870"
                     /old_locus_tag="B9N25_24800"
     CDS             complement(12063..12791)
                     /gene="traK"
                     /locus_tag="B9N25_RS24870"
                     /old_locus_tag="B9N25_24800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001230803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system secretin
                     TraK"
                     /protein_id="WP_001230808.1"
                     /translation="MRKNNTAIIFGSLFFSCSVMAANGTLSPTVVPMVNGGQASIAIS
                     NTSPNLFTVPGDRIIAVNSLDGALTNNEQTASGGVVVATVNKKPFTFILETERGLNLS
                     IQAVPREGAGRTIQLVSDLRGTGEEAGAWETSTPYESLLVTISQAVRGGKLPAGWYQV
                     PVTKETLQAPAGLSSVADAVWTGNHLKMVRFAVENKTLSALNIRESDFWQPGTRAVMF
                     SQPASQLLAGACMDVYVIRDGEGN"
     gene            complement(12778..13344)
                     /gene="traE"
                     /locus_tag="B9N25_RS24875"
                     /old_locus_tag="B9N25_24805"
     CDS             complement(12778..13344)
                     /gene="traE"
                     /locus_tag="B9N25_RS24875"
                     /old_locus_tag="B9N25_24805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraE"
                     /protein_id="WP_000399791.1"
                     /translation="MEHGARLSTSRVMAIAFIFMSVLIVLSLSVNVIQGVNNYRLQNE
                     QRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRLNVSSETVDASHQALLKYIRP
                     GAQNQMKVILAEEAKRIKNDNVNSAFFQTSVRVWPQYGRVEIRGVLKTWIGDSKPFTD
                     IKHYILILKRENGVTWLDNFGETDDEKK"
     gene            complement(13366..13677)
                     /gene="traL"
                     /locus_tag="B9N25_RS24880"
                     /old_locus_tag="B9N25_24810"
     CDS             complement(13366..13677)
                     /gene="traL"
                     /locus_tag="B9N25_RS24880"
                     /old_locus_tag="B9N25_24810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraL"
                     /protein_id="WP_000012107.1"
                     /translation="MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITT
                     SKYLFGIGAAVLVYFGIKKLKKGRGSSWLRDLIYWYMPTALLRGIFHNVPDSCFRQWV
                     K"
     gene            complement(13682..14044)
                     /gene="traA"
                     /locus_tag="B9N25_RS24885"
                     /old_locus_tag="B9N25_24815"
     CDS             complement(13682..14044)
                     /gene="traA"
                     /locus_tag="B9N25_RS24885"
                     /old_locus_tag="B9N25_24815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005771228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system pilin TraA"
                     /protein_id="WP_000338606.1"
                     /translation="MDAFLSVQGASAPVKKKSFFSKFTRLNMLRLARAVIPAAVLMMF
                     FPQLAMAAQGQDLMASGNTTVKATFGKDSSVVKWVVLAEVLVGAVMYMMTKNVKFLAG
                     FAIISVFIAVGMAVVGLK"
     gene            complement(14078..14305)
                     /gene="traY"
                     /locus_tag="B9N25_RS24890"
                     /old_locus_tag="B9N25_24820"
     CDS             complement(14078..14305)
                     /gene="traY"
                     /locus_tag="B9N25_RS24890"
                     /old_locus_tag="B9N25_24820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001254388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer relaxosome protein TraY"
                     /protein_id="WP_001254388.1"
                     /translation="MRRRNARGGISRTVSVYLDEDTNNRLIRAKDRSGRSKTIEVQIR
                     LRDHLKRFPDFYNEEIFREVIEENESTFKEL"
     gene            complement(14393..15070)
                     /locus_tag="B9N25_RS24895"
                     /old_locus_tag="B9N25_24825"
     CDS             complement(14393..15070)
                     /locus_tag="B9N25_RS24895"
                     /old_locus_tag="B9N25_24825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001348626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="WP_001348626.1"
                     /translation="MRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKKRKILYANGA
                     FIELFSKEDKPFSGESYVRLQVEIFLSSLELECQSLGHGSAFCRRFNFHGEIYQIRME
                     NVSFYNEESVVLWQINIFPDYPFFRVEKENYYHRDSYVQSVISNMTAKSLVVFCFYAL
                     GYKHINIAKELKITEVASKKRIKKINADINKRLGSFDLFRNKCIKTGVMYEILNVLSE
                     YMGVKKM"
     gene            complement(15204..15587)
                     /gene="traM"
                     /locus_tag="B9N25_RS24900"
                     /old_locus_tag="B9N25_24830"
     CDS             complement(15204..15587)
                     /gene="traM"
                     /locus_tag="B9N25_RS24900"
                     /old_locus_tag="B9N25_24830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151566.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer relaxosome DNA-binding protein
                     TraM"
                     /protein_id="WP_001151566.1"
                     /translation="MAKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLE
                     LGLRVYETQMERKESAFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNPKFEY
                     ANMVEDIREKVSSEMERFFPENDEG"
     gene            15930..16520
                     /locus_tag="B9N25_RS24905"
                     /old_locus_tag="B9N25_24835"
     CDS             15930..16520
                     /locus_tag="B9N25_RS24905"
                     /old_locus_tag="B9N25_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="WP_001376243.1"
                     /translation="MVRTTNLLSLFVEWVKLFTDKVTRGGKMKKWMLAICLMFINEIC
                     QATDCFDLAGRDYKIDPDLLRAISWQESRYRVNAIGINPVTGYGSGLMQVDSQHFNEL
                     ARYGIKPEHLTTDPCMNIYTGAYYLAIAFKKWGVTWEAVGAYNAGFRKTERQNQRRLA
                     YASDVYRIYTGIKSSKGIRLPATKKSLPEINSVQNN"
     gene            complement(16817..17638)
                     /locus_tag="B9N25_RS24910"
                     /old_locus_tag="B9N25_24840"
     CDS             complement(16817..17638)
                     /locus_tag="B9N25_RS24910"
                     /old_locus_tag="B9N25_24840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001234456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF932 domain-containing protein"
                     /protein_id="WP_001234469.1"
                     /translation="MRLASRFGRYNSIRRERPLTDDELMQFVPSVFSGDKHESRSERY
                     TYIPTINIINKLRDEGFQPFFACQSRVRDLGRREYSKHMLRLRREGHINGQEVPEIIL
                     LNSHDGSSSYQMIPGIFRFVCTNGLVCGNNFGEIRVPHKGDIVGQVIEGAYEVLGVFD
                     KVTDNMEAMKEIHLNSDEQHLFGRAALMVRYEDENKTPVTPEQIITPRRREDKQNDLW
                     TTWQRVQENMIKGGLSGRSASGKNTRTRAITGIDGDIRINKALWVIAEQFRKWKS"
     gene            complement(17757..18044)
                     /locus_tag="B9N25_RS24915"
                     /old_locus_tag="B9N25_24845"
     CDS             complement(17757..18044)
                     /locus_tag="B9N25_RS24915"
                     /old_locus_tag="B9N25_24845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001825190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000107535.1"
                     /translation="MSTRNIHVNTASYTLLVAGKKKNTGEEWDVLEFSSLTELKKYRK
                     SHPEKMAFSYSYALSQGVDKQFRHINIAEADHFKQFLRQIKRAGLDIRAIC"
     gene            complement(18069..18275)
                     /locus_tag="B9N25_RS24920"
                     /old_locus_tag="B9N25_24850"
     CDS             complement(18069..18275)
                     /locus_tag="B9N25_RS24920"
                     /old_locus_tag="B9N25_24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000547968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000275859.1"
                     /translation="MYIPQNFLPRSRQKLLRSAPGQSFPSVAVMPLAAKVLKKVMVNT
                     GGNKRQVPAKRQNRGSRNSTDDGG"
     gene            18345..>18518
                     /locus_tag="B9N25_RS28285"
                     /pseudo
     CDS             18345..>18518
                     /locus_tag="B9N25_RS28285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052655.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(18516..18746)
                     /locus_tag="B9N25_RS28290"
                     /old_locus_tag="B9N25_24865"
     CDS             complement(18516..18746)
                     /locus_tag="B9N25_RS28290"
                     /old_locus_tag="B9N25_24865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001380705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001426396.1"
                     /translation="MACQKSHHLPCDYSLFLPALILTTAVLSCLPGAPSAPGCLAASG
                     RQARLRQAAAGAPASLRRTRWRGFGLSLRSDA"
     gene            complement(18966..19091)
                     /locus_tag="B9N25_RS24935"
                     /old_locus_tag="B9N25_24870"
     CDS             complement(18966..19091)
                     /locus_tag="B9N25_RS24935"
                     /old_locus_tag="B9N25_24870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="WP_001372321.1"
                     /translation="MLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK"
     gene            complement(<19033..19182)
                     /gene="mok"
                     /locus_tag="B9N25_RS28295"
                     /pseudo
     CDS             complement(<19033..19182)
                     /gene="mok"
                     /locus_tag="B9N25_RS28295"
                     /inference="COORDINATES: protein motif:HMM:NF010277.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance protein Mok"
     gene            complement(19235..20604)
                     /locus_tag="B9N25_RS24940"
                     /old_locus_tag="B9N25_24875"
     CDS             complement(join(19235..20124,20124..20604))
                     /locus_tag="B9N25_RS24940"
                     /old_locus_tag="B9N25_24875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /ribosomal_slippage
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence
                     IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS150 family transposase"
                     /protein_id="WP_085947770.1"
                     /translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA
                     LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK
                     VYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMY
                     PKKAESLSSSHEKVKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKK
                     RISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGE
                     VGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERP
                     VMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLD
                     NAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQ
                     TYMPRV"
     gene            complement(20807..21569)
                     /locus_tag="B9N25_RS24945"
                     /old_locus_tag="B9N25_24885"
                     /pseudo
     CDS             complement(20807..21569)
                     /locus_tag="B9N25_RS24945"
                     /old_locus_tag="B9N25_24885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid SOS inhibition protein A"
     gene            complement(21566..22000)
                     /gene="psiB"
                     /locus_tag="B9N25_RS24950"
                     /old_locus_tag="B9N25_24890"
     CDS             complement(21566..22000)
                     /gene="psiB"
                     /locus_tag="B9N25_RS24950"
                     /old_locus_tag="B9N25_24890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000845953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugation system SOS inhibitor PsiB"
                     /protein_id="WP_000845940.1"
                     /translation="MKTELTLNVLQTMSAQEYEDIRAAGSDERRELTHAVMRELDAPD
                     NWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQVWVLVLVNAGGEPFAVV
                     QVQRRFAPEAVSHSLALAASLDAQGYSVSDIIHILMAEGGQA"
     gene            complement(22055..24013)
                     /locus_tag="B9N25_RS24955"
                     /old_locus_tag="B9N25_24895"
     CDS             complement(22055..24013)
                     /locus_tag="B9N25_RS24955"
                     /old_locus_tag="B9N25_24895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="WP_000117179.1"
                     /translation="MSVTESKAKTERKSSRKPAKTQETVLSALLAQTEEVSVPLASLI
                     KSPLNVRTVPYSVESVSELAESIKGVGLLQNLVVHTLPGDRYGVAAGGRRLAALNMLA
                     ERNILPADWPVRVKVILQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQTG
                     DLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQ
                     SGWGGKPDVRVIRNLITESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDEGGYVDCV
                     ALDAALLEKLQAVAEFLREAEGWGWCAGRMEPVGECREDAGTYRCLPEPEAVLTEAEE
                     ERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEMRAGGGVVVSWRYGNV
                     CVQRGVQLRSEDDVADDADRTEQVQEKASVGGISLPLLTKMSSERTLAVQAALMQQPD
                     KSLALLAWTLCLNVFGSGAYSKPAQISLECKHYSLTSDAPSGKEGVAFMALMAEKARL
                     AALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGHTSRSPLDSLETAI
                     GFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKD
                     NCWVPGWMCAPHPQTDTTERTDNLADAA"
     gene            complement(24079..24312)
                     /locus_tag="B9N25_RS24960"
                     /old_locus_tag="B9N25_24900"
     CDS             complement(24079..24312)
                     /locus_tag="B9N25_RS24960"
                     /old_locus_tag="B9N25_24900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 family protein"
                     /protein_id="WP_000005990.1"
                     /translation="MSEYFRILQGLPDGPFTRKHAEAVAAQYRNVFIEDDHGEQFRLV
                     VRNNGAMVWRTWNFEDGAGYWMNHVIRDFGILK"
     gene            complement(24375..24914)
                     /locus_tag="B9N25_RS24965"
                     /old_locus_tag="B9N25_24905"
     CDS             complement(24375..24914)
                     /locus_tag="B9N25_RS24965"
                     /old_locus_tag="B9N25_24905"
                     /inference="COORDINATES: protein motif:HMM:NF010292.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="WP_000290841.1"
                     /translation="MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDK
                     QTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEIL
                     VKTTGTMQMLGRAAGAQTQPEEGQQFSGQPQPEPQSEAGTKKGGAKTKGRGRKAAQPE
                     PQPQPPEGEDYGFSDDIPF"
     gene            complement(24940..25146)
                     /locus_tag="B9N25_RS28300"
                     /old_locus_tag="B9N25_24910"
     CDS             complement(24940..25146)
                     /locus_tag="B9N25_RS28300"
                     /old_locus_tag="B9N25_24910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000547968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000547975.1"
                     /translation="MHIPQNFLPRSRQKLLRSAPGQSFPSVAVMPHAAKVLKKVMVNT
                     GGNKRQVPAKRQNRGSRNSKDDGG"
     gene            25216..>25389
                     /locus_tag="B9N25_RS28305"
                     /pseudo
     CDS             25216..>25389
                     /locus_tag="B9N25_RS28305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052655.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
CONTIG      join(NFSV01000037.1:1..25565)
//
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