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NCBI Reference Sequence: NZ_NFSV01000037.1
FASTA Graphics
LOCUS NZ_NFSV01000037 25565 bp DNA linear CON 09-JUL-2024 DEFINITION Escherichia coli strain CVAST1327 NODE_37_length_25565_cov_28.2384, whole genome shotgun sequence. ACCESSION NZ_NFSV01000037 NZ_NFSV01000000 VERSION NZ_NFSV01000037.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN06806412 Assembly: GCF_003317385.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 25565) AUTHORS Johnson,T.J. and Johnson,J.R. TITLE Within host evolution of Escherichia coli isolates within the fecal flora of colonized patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 25565) AUTHORS Johnson,T.J. and Johnson,J.R. TITLE Direct Submission JOURNAL Submitted (03-MAY-2017) Veterinary and Biomedical Sciences, University of Minnesota, 1971 Commonwealth Ave, 205 Veterinary Science, St Paul, MN 55108, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to NFSV01000037.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.10.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_003317385.1-RS_2024_07_09 Annotation Date :: 07/09/2024 04:23:16 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,173 CDSs (total) :: 5,067 Genes (coding) :: 4,855 CDSs (with protein) :: 4,855 Genes (RNA) :: 106 rRNAs :: 8, 9, 1 (5S, 16S, 23S) complete rRNAs :: 8, 1, 1 (5S, 16S, 23S) partial rRNAs :: 8 (16S) tRNAs :: 83 ncRNAs :: 5 Pseudo Genes (total) :: 212 CDSs (without protein) :: 212 Pseudo Genes (ambiguous residues) :: 0 of 212 Pseudo Genes (frameshifted) :: 74 of 212 Pseudo Genes (incomplete) :: 160 of 212 Pseudo Genes (internal stop) :: 42 of 212 Pseudo Genes (multiple problems) :: 55 of 212 Pseudo Genes (short protein) :: 1 of 212 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..25565 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="NODE_37_length_25565_cov_28.2384" /strain="CVAST1327" /isolation_source="Rectal swab" /host="Homo sapiens" /db_xref="taxon:562" /geo_loc_name="USA: Minnesota" /lat_lon="46.73 N 94.69 W" /collection_date="2016" /collected_by="VA Medical Center, Minneapolis" gene <1..223 /locus_tag="B9N25_RS28530" CDS <1..223 /locus_tag="B9N25_RS28530" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=2 /transl_table=11 /product="hypothetical protein" /protein_id="WP_213160234.1" /translation="VPAYGPQNDVTLKMPAFEWVHVQLHQQKGMISLSPPTICNSALW DALRMNMMISYQELVRTFLNRTTPVNIFK" gene complement(250..993) /gene="traF" /locus_tag="B9N25_RS24800" /old_locus_tag="B9N25_24730" CDS complement(250..993) /gene="traF" /locus_tag="B9N25_RS24800" /old_locus_tag="B9N25_24730" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001030376.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system pilin assembly protein TraF" /protein_id="WP_001030401.1" /translation="MNKALLPLLLCCFIFPASGKDAGWQWYNEKISPKEKENKPVPAA PRQEPDIMQKLAALQTATKRALYEAILYPGVDNFVKYFRLQNYWTQQAGLFTMSAKKA MLAHPELDYNLQYSHYNGTVRNQLAADQAQQRQAIAKLAEYYGIMFFYRGQDPIDGQL AQVINGFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPAMMLVDPKQGS VRPLSYGFISQDDLAKQFLNVSEDFKPKF" gene complement(986..1243) /locus_tag="B9N25_RS24805" /old_locus_tag="B9N25_24735" CDS complement(986..1243) /locus_tag="B9N25_RS24805" /old_locus_tag="B9N25_24735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000864342.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer protein TrbE" /protein_id="WP_000864347.1" /translation="MKVIFTSNRLVDFLIRLLITAIVISPVIIWSWDTVKETTADGML AAAFVILYSGVLLFILYFCFSALTGLQKADERKNDERNEDE" gene complement(1270..3120) /gene="traN" /locus_tag="B9N25_RS24810" /old_locus_tag="B9N25_24740" CDS complement(1270..3120) /gene="traN" /locus_tag="B9N25_RS24810" /old_locus_tag="B9N25_24740" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490579.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system mating-pair stabilization protein TraN" /protein_id="WP_000821866.1" /translation="MKRILPLILALVTGMAQADSNSDYRAGSDFAHQIKGQGSSSIQG FKPQESIPGYNANPDETKYYGGVTAGGDGGLKNDGTTEWATGETGKTITESFMNKPKD ILSPDAPFIQTGRDVVNRADSIVGNTGQQCSAQQINRSEFTNYTCERDTMVEEYCSRT ASITGDWKYTDEYREVTIPHSQFRFSMNGLKLVFSVTVPVAGTVESASLSVHAGLYFL NSRYDFMNTTFNVQLVTGQSGTFTIPVPSGFSVTQGQVLTGSGCTANGNCLPHGNGDR KVYESLVSGASTFTLKLRMKVRDKEWVPRVEWVESCPFNKADGVLKGTECSEPGGTKT GVMEGKPWSITQACWAYRDKYVTQSADNGTCQKYVDNPACTLASRQCAFYSDEGTCLH EYATYSCESKTSGKVMVCGGDVFCLDGECDKAQSGKSSDFGEAVSQLAALAAAGKDVA ALNGVDVRAFTGEAKFCRKAAAGFSNCCKDGGWGQDVGLAKCNSEEKALGKAKDNKLT VSVGEFCSKKVLGVCLQKKRSYCQFDSKLAQIVQQQGRNGQLRIGFGSAKHPDCRGIT VDELQKIQFDRLDFTNFYEDLMNNQKIPDSGVLTQKVKEQIADQLKQAGQ" gene complement(3117..3755) /gene="trbC" /locus_tag="B9N25_RS24815" /old_locus_tag="B9N25_24745" CDS complement(3117..3755) /gene="trbC" /locus_tag="B9N25_RS24815" /old_locus_tag="B9N25_24745" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001733892.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system pilin assembly protein TrbC" /protein_id="WP_001080259.1" /translation="MNRKIFALFALTAGMHLAVHASENVNTTENRQFLKQQETLSQQL REKPDIQLQAWAEQQVRANPLQHSDNQFLDELVRKQQAAQKDKPQQGAVYFVSFSIPE EGLKRMLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGI RSVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKGDSGK" gene complement(3764..4069) /locus_tag="B9N25_RS24820" /old_locus_tag="B9N25_24750" CDS complement(3764..4069) /locus_tag="B9N25_RS24820" /old_locus_tag="B9N25_24750" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001505125.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000224413.1" /translation="MATMDSKYIQHLRKIGAVLLRLISRTLNLFPFGLVMVPVILFYF APDSFLAEIIHEWKKADISEQVTLVRLYLKVTFTCVFMAVFLNYLFSDEFMPVNSRK" gene complement(4099..5091) /gene="traU" /locus_tag="B9N25_RS24825" /old_locus_tag="B9N25_24755" CDS complement(4099..5091) /gene="traU" /locus_tag="B9N25_RS24825" /old_locus_tag="B9N25_24755" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490576.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer pilus assembly protein TraU" /protein_id="WP_000830190.1" /translation="MKRRLWLLMLFLLAGHVPAASADSACEGRFVNPITDICWSCIFP LSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCM VNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDLD IAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGS QGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILP KERWRYQMVNMYPDSGQCHPFGRSVMRWETGKNPPNTKKNFGYLMWRKRNCVFL" gene complement(5088..5720) /gene="traW" /locus_tag="B9N25_RS24830" /old_locus_tag="B9N25_24760" CDS complement(5088..5720) /gene="traW" /locus_tag="B9N25_RS24830" /old_locus_tag="B9N25_24760" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490575.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system protein TraW" /protein_id="WP_001203727.1" /translation="MRCRGLIALLIWGQSVAAADLGTWGDLWPVKEPDMLTVIMQRLT ALEQSGEMGRKMDAFKERVIRNSLRPPAVPGIGRTEKYSSRLFDPSVRLAADIRDNEG RVFARQGEVMNPLQYVPFNQTLYFINGDDPAQVAWMKRQTPPTLESKIILVQGSIPEM QKALDSRIYFDQNGVLCQRLGIDQVPARVSAVPGDRFLKVEFIPAEEGRK" gene complement(5717..6103) /gene="trbI" /locus_tag="B9N25_RS24835" /old_locus_tag="B9N25_24765" CDS complement(5717..6103) /gene="trbI" /locus_tag="B9N25_RS24835" /old_locus_tag="B9N25_24765" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490574.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system protein TrbI" /protein_id="WP_000214084.1" /translation="MTTTQKTTDVTAPRRSHWWWTVPGCLAMVLLNAAVSYGIVRLNA PVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVS PAVVQGAPDITREIQQDIARRMRAEP" gene complement(6100..8727) /gene="traC" /locus_tag="B9N25_RS24840" /old_locus_tag="B9N25_24770" CDS complement(6100..8727) /gene="traC" /locus_tag="B9N25_RS24840" /old_locus_tag="B9N25_24770" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001064255.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type IV secretion system protein TraC" /protein_id="WP_001064258.1" /translation="MNNPLEAVTQAVNSLVTALKLPDESAKANEVLGEMSFPQFSRLL PYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGVPFCIHLKS SQLVGDRIEYGLREFSWSGEQAERFNAITRAYYMNAAATQFPLPEGMNLPLTLRHYRV FFSYCSPSKKKSRADILEMENLVKIIRASLQGASIATQTVDAQAFIDIVGEMINHNPD SLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFHLARNPE IAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSY AKWFPSVEKEAKEWGELRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFR KNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANLMPLVADNP LTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGG FAVVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNG NLDEVHEGLLLQAVRASWLAKENRARIDDVVDFLKNASDSEQYAGSPTIRSRLDEMIV LLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRM YRTPRNLKKLNVIDEGWRLLDFKNYKVGEFIEKGYRTARRHTGAYITITQNIVDFDSD KASSAARAAWGNSSYKIILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAARDQWFSS FLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEGLSIHEAVWQLAWKKSGP EMASLEAWLEEHEKYRSVA" gene complement(8887..9108) /gene="traR" /locus_tag="B9N25_RS24845" /old_locus_tag="B9N25_24775" CDS complement(8887..9108) /gene="traR" /locus_tag="B9N25_RS24845" /old_locus_tag="B9N25_24775" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490571.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer protein TraR" /protein_id="WP_001278694.1" /translation="MSDEADEAYSVTEQLTMTGINRIRQKINVHGIPVYLCEACGNPI PEARRKIFPGVTLCVECQAYQEKQRKHYA" gene complement(9243..9758) /gene="traV" /locus_tag="B9N25_RS24850" /old_locus_tag="B9N25_24780" CDS complement(9243..9758) /gene="traV" /locus_tag="B9N25_RS24850" /old_locus_tag="B9N25_24780" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016233168.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type IV conjugative transfer system lipoprotein TraV" /protein_id="WP_000809886.1" /translation="MKQISLFIPLLGTLLLSGCAGTSTEFECNATTSDTCMTMEQANE KAKELEQSSEAKPVAASLPRLAEGNFRTMPVQTVTATPPSGSRPAVTALPEQKLLAPR PLFTAAREVKTIVPVSSVAPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVI KPSAWGKPRIN" gene complement(9758..10069) /locus_tag="B9N25_RS24855" /old_locus_tag="B9N25_24785" CDS complement(9758..10069) /locus_tag="B9N25_RS24855" /old_locus_tag="B9N25_24785" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001057281.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer protein TrbD" /protein_id="WP_001057272.1" /translation="MNMRNIITARSVPDKSVSDDFMNAVLSNCTTRIVLPALKEFGSE SLPHNFNMAAVGVMKKGMSMSLFSSPGNTVVSGQPCAGKTNLTVELISAVVESNKKGE G" gene complement(10056..10622) /gene="traP" /locus_tag="B9N25_RS24860" /old_locus_tag="B9N25_24790" CDS complement(10056..10622) /gene="traP" /locus_tag="B9N25_RS24860" /old_locus_tag="B9N25_24790" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000896598.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer pilus-stabilizing protein TraP" /protein_id="WP_001617877.1" /translation="MAGDALTFRVAFVVRWLLWVVRFVVIWPLATMALMALFVLWKDN TTLGKLLVKEINFVRQTAPAGQFPVSECWFSSSDSSGRSEIQDICHYRAADAADYVRE TDRSLMQLVTAFWATLALMYVSLAAITGKYPVRPGKMKCVRVGTADEHLKEVYTEDTS LSEKIRKCHVYFPDDRANRNNGDKNEHA" gene complement(10612..12063) /gene="traB" /locus_tag="B9N25_RS24865" /old_locus_tag="B9N25_24795" CDS complement(10612..12063) /gene="traB" /locus_tag="B9N25_RS24865" /old_locus_tag="B9N25_24795" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000146653.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="F-type conjugal transfer pilus assembly protein TraB" /protein_id="WP_000146687.1" /translation="MASINTIVKRKQYLWLGIVVVGTASAIGGALYLSDVDMSGNGET VAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDD QRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQTPASPPGPEGEPQPGNTPVSFPP QGSVAVPPPTAFYPGNGVTPPPQVMYQSVPVPNRIQRKVFTRNEGKQGPSLPYIPSGS FAKAMLIEGADANASVTGNESTVPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSS ERAIVRTRNISCLKNGKTIDMPIKGHVSFRGKNGIKGEVVMRNGKILGWAWGAGFVDG IGQGMERASQPAVGLGATAAYGAGDVLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIP IGAGNEVTVVFQDGFQLKTVEEMALEQSQSTAEEGNPESPVPNPPSAESHLNGFNTDQ MLKQLGNLNPQQFMSGDKNPQGGDAGKEGGNGG" gene complement(12063..12791) /gene="traK" /locus_tag="B9N25_RS24870" /old_locus_tag="B9N25_24800" CDS complement(12063..12791) /gene="traK" /locus_tag="B9N25_RS24870" /old_locus_tag="B9N25_24800" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001230803.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type-F conjugative transfer system secretin TraK" /protein_id="WP_001230808.1" /translation="MRKNNTAIIFGSLFFSCSVMAANGTLSPTVVPMVNGGQASIAIS NTSPNLFTVPGDRIIAVNSLDGALTNNEQTASGGVVVATVNKKPFTFILETERGLNLS IQAVPREGAGRTIQLVSDLRGTGEEAGAWETSTPYESLLVTISQAVRGGKLPAGWYQV PVTKETLQAPAGLSSVADAVWTGNHLKMVRFAVENKTLSALNIRESDFWQPGTRAVMF SQPASQLLAGACMDVYVIRDGEGN" gene complement(12778..13344) /gene="traE" /locus_tag="B9N25_RS24875" /old_locus_tag="B9N25_24805" CDS complement(12778..13344) /gene="traE" /locus_tag="B9N25_RS24875" /old_locus_tag="B9N25_24805" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490565.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type IV conjugative transfer system protein TraE" /protein_id="WP_000399791.1" /translation="MEHGARLSTSRVMAIAFIFMSVLIVLSLSVNVIQGVNNYRLQNE QRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRLNVSSETVDASHQALLKYIRP GAQNQMKVILAEEAKRIKNDNVNSAFFQTSVRVWPQYGRVEIRGVLKTWIGDSKPFTD IKHYILILKRENGVTWLDNFGETDDEKK" gene complement(13366..13677) /gene="traL" /locus_tag="B9N25_RS24880" /old_locus_tag="B9N25_24810" CDS complement(13366..13677) /gene="traL" /locus_tag="B9N25_RS24880" /old_locus_tag="B9N25_24810" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_490564.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type IV conjugative transfer system protein TraL" /protein_id="WP_000012107.1" /translation="MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITT SKYLFGIGAAVLVYFGIKKLKKGRGSSWLRDLIYWYMPTALLRGIFHNVPDSCFRQWV K" gene complement(13682..14044) /gene="traA" /locus_tag="B9N25_RS24885" /old_locus_tag="B9N25_24815" CDS complement(13682..14044) /gene="traA" /locus_tag="B9N25_RS24885" /old_locus_tag="B9N25_24815" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005771228.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type IV conjugative transfer system pilin TraA" /protein_id="WP_000338606.1" /translation="MDAFLSVQGASAPVKKKSFFSKFTRLNMLRLARAVIPAAVLMMF FPQLAMAAQGQDLMASGNTTVKATFGKDSSVVKWVVLAEVLVGAVMYMMTKNVKFLAG FAIISVFIAVGMAVVGLK" gene complement(14078..14305) /gene="traY" /locus_tag="B9N25_RS24890" /old_locus_tag="B9N25_24820" CDS complement(14078..14305) /gene="traY" /locus_tag="B9N25_RS24890" /old_locus_tag="B9N25_24820" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001254388.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer relaxosome protein TraY" /protein_id="WP_001254388.1" /translation="MRRRNARGGISRTVSVYLDEDTNNRLIRAKDRSGRSKTIEVQIR LRDHLKRFPDFYNEEIFREVIEENESTFKEL" gene complement(14393..15070) /locus_tag="B9N25_RS24895" /old_locus_tag="B9N25_24825" CDS complement(14393..15070) /locus_tag="B9N25_RS24895" /old_locus_tag="B9N25_24825" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001348626.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PAS domain-containing protein" /protein_id="WP_001348626.1" /translation="MRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKKRKILYANGA FIELFSKEDKPFSGESYVRLQVEIFLSSLELECQSLGHGSAFCRRFNFHGEIYQIRME NVSFYNEESVVLWQINIFPDYPFFRVEKENYYHRDSYVQSVISNMTAKSLVVFCFYAL GYKHINIAKELKITEVASKKRIKKINADINKRLGSFDLFRNKCIKTGVMYEILNVLSE YMGVKKM" gene complement(15204..15587) /gene="traM" /locus_tag="B9N25_RS24900" /old_locus_tag="B9N25_24830" CDS complement(15204..15587) /gene="traM" /locus_tag="B9N25_RS24900" /old_locus_tag="B9N25_24830" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001151566.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugal transfer relaxosome DNA-binding protein TraM" /protein_id="WP_001151566.1" /translation="MAKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLE LGLRVYETQMERKESAFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNPKFEY ANMVEDIREKVSSEMERFFPENDEG" gene 15930..16520 /locus_tag="B9N25_RS24905" /old_locus_tag="B9N25_24835" CDS 15930..16520 /locus_tag="B9N25_RS24905" /old_locus_tag="B9N25_24835" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020246007.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transglycosylase SLT domain-containing protein" /protein_id="WP_001376243.1" /translation="MVRTTNLLSLFVEWVKLFTDKVTRGGKMKKWMLAICLMFINEIC QATDCFDLAGRDYKIDPDLLRAISWQESRYRVNAIGINPVTGYGSGLMQVDSQHFNEL ARYGIKPEHLTTDPCMNIYTGAYYLAIAFKKWGVTWEAVGAYNAGFRKTERQNQRRLA YASDVYRIYTGIKSSKGIRLPATKKSLPEINSVQNN" gene complement(16817..17638) /locus_tag="B9N25_RS24910" /old_locus_tag="B9N25_24840" CDS complement(16817..17638) /locus_tag="B9N25_RS24910" /old_locus_tag="B9N25_24840" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001234456.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF932 domain-containing protein" /protein_id="WP_001234469.1" /translation="MRLASRFGRYNSIRRERPLTDDELMQFVPSVFSGDKHESRSERY TYIPTINIINKLRDEGFQPFFACQSRVRDLGRREYSKHMLRLRREGHINGQEVPEIIL LNSHDGSSSYQMIPGIFRFVCTNGLVCGNNFGEIRVPHKGDIVGQVIEGAYEVLGVFD KVTDNMEAMKEIHLNSDEQHLFGRAALMVRYEDENKTPVTPEQIITPRRREDKQNDLW TTWQRVQENMIKGGLSGRSASGKNTRTRAITGIDGDIRINKALWVIAEQFRKWKS" gene complement(17757..18044) /locus_tag="B9N25_RS24915" /old_locus_tag="B9N25_24845" CDS complement(17757..18044) /locus_tag="B9N25_RS24915" /old_locus_tag="B9N25_24845" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001825190.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000107535.1" /translation="MSTRNIHVNTASYTLLVAGKKKNTGEEWDVLEFSSLTELKKYRK SHPEKMAFSYSYALSQGVDKQFRHINIAEADHFKQFLRQIKRAGLDIRAIC" gene complement(18069..18275) /locus_tag="B9N25_RS24920" /old_locus_tag="B9N25_24850" CDS complement(18069..18275) /locus_tag="B9N25_RS24920" /old_locus_tag="B9N25_24850" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000547968.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000275859.1" /translation="MYIPQNFLPRSRQKLLRSAPGQSFPSVAVMPLAAKVLKKVMVNT GGNKRQVPAKRQNRGSRNSTDDGG" gene 18345..>18518 /locus_tag="B9N25_RS28285" /pseudo CDS 18345..>18518 /locus_tag="B9N25_RS28285" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_052655.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" gene complement(18516..18746) /locus_tag="B9N25_RS28290" /old_locus_tag="B9N25_24865" CDS complement(18516..18746) /locus_tag="B9N25_RS28290" /old_locus_tag="B9N25_24865" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001380705.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001426396.1" /translation="MACQKSHHLPCDYSLFLPALILTTAVLSCLPGAPSAPGCLAASG RQARLRQAAAGAPASLRRTRWRGFGLSLRSDA" gene complement(18966..19091) /locus_tag="B9N25_RS24935" /old_locus_tag="B9N25_24870" CDS complement(18966..19091) /locus_tag="B9N25_RS24935" /old_locus_tag="B9N25_24870" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_052660.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type I toxin-antitoxin system Hok family toxin" /protein_id="WP_001372321.1" /translation="MLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK" gene complement(<19033..19182) /gene="mok" /locus_tag="B9N25_RS28295" /pseudo CDS complement(<19033..19182) /gene="mok" /locus_tag="B9N25_RS28295" /inference="COORDINATES: protein motif:HMM:NF010277.0" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="plasmid maintenance protein Mok" gene complement(19235..20604) /locus_tag="B9N25_RS24940" /old_locus_tag="B9N25_24875" CDS complement(join(19235..20124,20124..20604)) /locus_tag="B9N25_RS24940" /old_locus_tag="B9N25_24875" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1" /ribosomal_slippage /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS3-like element IS150 family transposase" /protein_id="WP_085947770.1" /translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK VYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMY PKKAESLSSSHEKVKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKK RISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGE VGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERP VMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLD NAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQ TYMPRV" gene complement(20807..21569) /locus_tag="B9N25_RS24945" /old_locus_tag="B9N25_24885" /pseudo CDS complement(20807..21569) /locus_tag="B9N25_RS24945" /old_locus_tag="B9N25_24885" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_052659.1" /note="frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="plasmid SOS inhibition protein A" gene complement(21566..22000) /gene="psiB" /locus_tag="B9N25_RS24950" /old_locus_tag="B9N25_24890" CDS complement(21566..22000) /gene="psiB" /locus_tag="B9N25_RS24950" /old_locus_tag="B9N25_24890" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000845953.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="conjugation system SOS inhibitor PsiB" /protein_id="WP_000845940.1" /translation="MKTELTLNVLQTMSAQEYEDIRAAGSDERRELTHAVMRELDAPD NWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQVWVLVLVNAGGEPFAVV QVQRRFAPEAVSHSLALAASLDAQGYSVSDIIHILMAEGGQA" gene complement(22055..24013) /locus_tag="B9N25_RS24955" /old_locus_tag="B9N25_24895" CDS complement(22055..24013) /locus_tag="B9N25_RS24955" /old_locus_tag="B9N25_24895" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_052657.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ParB/RepB/Spo0J family partition protein" /protein_id="WP_000117179.1" /translation="MSVTESKAKTERKSSRKPAKTQETVLSALLAQTEEVSVPLASLI KSPLNVRTVPYSVESVSELAESIKGVGLLQNLVVHTLPGDRYGVAAGGRRLAALNMLA ERNILPADWPVRVKVILQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQTG DLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQ SGWGGKPDVRVIRNLITESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDEGGYVDCV ALDAALLEKLQAVAEFLREAEGWGWCAGRMEPVGECREDAGTYRCLPEPEAVLTEAEE ERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEMRAGGGVVVSWRYGNV CVQRGVQLRSEDDVADDADRTEQVQEKASVGGISLPLLTKMSSERTLAVQAALMQQPD KSLALLAWTLCLNVFGSGAYSKPAQISLECKHYSLTSDAPSGKEGVAFMALMAEKARL AALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGHTSRSPLDSLETAI GFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKD NCWVPGWMCAPHPQTDTTERTDNLADAA" gene complement(24079..24312) /locus_tag="B9N25_RS24960" /old_locus_tag="B9N25_24900" CDS complement(24079..24312) /locus_tag="B9N25_RS24960" /old_locus_tag="B9N25_24900" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_958724.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF905 family protein" /protein_id="WP_000005990.1" /translation="MSEYFRILQGLPDGPFTRKHAEAVAAQYRNVFIEDDHGEQFRLV VRNNGAMVWRTWNFEDGAGYWMNHVIRDFGILK" gene complement(24375..24914) /locus_tag="B9N25_RS24965" /old_locus_tag="B9N25_24905" CDS complement(24375..24914) /locus_tag="B9N25_RS24965" /old_locus_tag="B9N25_24905" /inference="COORDINATES: protein motif:HMM:NF010292.0" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="single-stranded DNA-binding protein" /protein_id="WP_000290841.1" /translation="MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDK QTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEIL VKTTGTMQMLGRAAGAQTQPEEGQQFSGQPQPEPQSEAGTKKGGAKTKGRGRKAAQPE PQPQPPEGEDYGFSDDIPF" gene complement(24940..25146) /locus_tag="B9N25_RS28300" /old_locus_tag="B9N25_24910" CDS complement(24940..25146) /locus_tag="B9N25_RS28300" /old_locus_tag="B9N25_24910" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000547968.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000547975.1" /translation="MHIPQNFLPRSRQKLLRSAPGQSFPSVAVMPHAAKVLKKVMVNT GGNKRQVPAKRQNRGSRNSKDDGG" gene 25216..>25389 /locus_tag="B9N25_RS28305" /pseudo CDS 25216..>25389 /locus_tag="B9N25_RS28305" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_052655.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" CONTIG join(NFSV01000037.1:1..25565) //
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