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Escherichia sp. R1 NODE_83_length_892_cov_130.731, whole genome shotgun sequence

NCBI Reference Sequence: NZ_PSRU01000078.1

FASTA Graphics 

LOCUS       NZ_PSRU01000078          892 bp    DNA     linear   CON 17-JAN-2024
DEFINITION  Escherichia sp. R1 NODE_83_length_892_cov_130.731, whole genome
            shotgun sequence.
ACCESSION   NZ_PSRU01000078 NZ_PSRU01000000
VERSION     NZ_PSRU01000078.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08473879
            Assembly: GCF_003000935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Escherichia sp. R1
  ORGANISM  Escherichia sp. R1
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Jiang,X., Cheng,H., Cui,X. and Zheng,B.
  TITLE     Prevalence of antibiotic resistance genes in antibiotic-resistant
            Escherichia sp. isolates in sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Jiang,X., Cheng,H., Cui,X. and Zheng,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2018) Zhejiang Chinese Medical University,
            Zhejiang Chinese Medical University, 548 Binwen Road, Hangzhou,
            Zhejiang 310003, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSRU01000078.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2017
            Assembly Method        :: SPAdes v. OCT-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 220.7855709x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/17/2024 10:05:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,163
            CDSs (total)                      :: 5,059
            Genes (coding)                    :: 4,810
            CDSs (with protein)               :: 4,810
            Genes (RNA)                       :: 104
            rRNAs                             :: 8, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 249
            CDSs (without protein)            :: 249
            Pseudo Genes (ambiguous residues) :: 0 of 249
            Pseudo Genes (frameshifted)       :: 85 of 249
            Pseudo Genes (incomplete)         :: 177 of 249
            Pseudo Genes (internal stop)      :: 39 of 249
            Pseudo Genes (multiple problems)  :: 49 of 249
            Pseudo Genes (short protein)      :: 4 of 249
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Escherichia sp. R1"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_83_length_892_cov_130.731"
                     /strain="R1"
                     /isolation_source="sewage"
                     /db_xref="taxon:2082616"
                     /geo_loc_name="China: Taizhou"
                     /collection_date="2017"
     gene            complement(<1..801)
                     /locus_tag="C4F37_RS27130"
                     /pseudo
     CDS             complement(<1..801)
                     /locus_tag="C4F37_RS27130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558215.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence
                     IEA]"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS2 family transposase"
CONTIG      join(PSRU01000078.1:1..892)
//
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