Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_PSRU01000078.1
FASTA Graphics
LOCUS NZ_PSRU01000078 892 bp DNA linear CON 17-JAN-2024 DEFINITION Escherichia sp. R1 NODE_83_length_892_cov_130.731, whole genome shotgun sequence. ACCESSION NZ_PSRU01000078 NZ_PSRU01000000 VERSION NZ_PSRU01000078.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN08473879 Assembly: GCF_003000935.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia sp. R1 ORGANISM Escherichia sp. R1 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 892) AUTHORS Jiang,X., Cheng,H., Cui,X. and Zheng,B. TITLE Prevalence of antibiotic resistance genes in antibiotic-resistant Escherichia sp. isolates in sewage JOURNAL Unpublished REFERENCE 2 (bases 1 to 892) AUTHORS Jiang,X., Cheng,H., Cui,X. and Zheng,B. TITLE Direct Submission JOURNAL Submitted (11-FEB-2018) Zhejiang Chinese Medical University, Zhejiang Chinese Medical University, 548 Binwen Road, Hangzhou, Zhejiang 310003, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to PSRU01000078.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: OCT-2017 Assembly Method :: SPAdes v. OCT-2017 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 220.7855709x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/17/2024 10:05:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,163 CDSs (total) :: 5,059 Genes (coding) :: 4,810 CDSs (with protein) :: 4,810 Genes (RNA) :: 104 rRNAs :: 8, 6, 1 (5S, 16S, 23S) complete rRNAs :: 8, 1, 1 (5S, 16S, 23S) partial rRNAs :: 5 (16S) tRNAs :: 83 ncRNAs :: 6 Pseudo Genes (total) :: 249 CDSs (without protein) :: 249 Pseudo Genes (ambiguous residues) :: 0 of 249 Pseudo Genes (frameshifted) :: 85 of 249 Pseudo Genes (incomplete) :: 177 of 249 Pseudo Genes (internal stop) :: 39 of 249 Pseudo Genes (multiple problems) :: 49 of 249 Pseudo Genes (short protein) :: 4 of 249 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..892 /organism="Escherichia sp. R1" /mol_type="genomic DNA" /submitter_seqid="NODE_83_length_892_cov_130.731" /strain="R1" /isolation_source="sewage" /db_xref="taxon:2082616" /geo_loc_name="China: Taizhou" /collection_date="2017" gene complement(<1..801) /locus_tag="C4F37_RS27130" /pseudo CDS complement(<1..801) /locus_tag="C4F37_RS27130" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_086558215.1" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS3-like element IS2 family transposase" CONTIG join(PSRU01000078.1:1..892) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on