Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_VDAZ01000042.1
FASTA Graphics
LOCUS NZ_VDAZ01000042 21114 bp DNA linear CON 17-DEC-2024 DEFINITION Escherichia coli strain EC_72 EC72_42, whole genome shotgun sequence. ACCESSION NZ_VDAZ01000042 NZ_VDAZ01000000 VERSION NZ_VDAZ01000042.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN11855595 Assembly: GCF_019583965.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 21114) AUTHORS Ikhimiukor,O., Vollmers,J., Adeleke,R.A., Kaster,A.-K., Mueller,J.A. and Adelowo,O. TITLE Antibiotic resistant Enterobacteriaceae from E-waste dumpsites, Nigeria JOURNAL Unpublished REFERENCE 2 (bases 1 to 21114) AUTHORS Ikhimiukor,O., Vollmers,J., Adeleke,R.A., Kaster,A.-K., Mueller,J.A. and Adelowo,O. TITLE Direct Submission JOURNAL Submitted (29-APR-2020) Department of Environmental Biotechnology, University of Ibadan, Nigeria, Agbowo, Ibadan, Oyo State 200218, Nigeria COMMENT REFSEQ INFORMATION: The reference sequence is identical to VDAZ01000042.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.13.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 232.667494713286x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_019583965.1-RS_2024_12_17 Annotation Date :: 12/17/2024 03:37:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,512 CDSs (total) :: 4,397 Genes (coding) :: 4,168 CDSs (with protein) :: 4,168 Genes (RNA) :: 115 rRNAs :: 8, 12, 4 (5S, 16S, 23S) complete rRNAs :: 3 (5S) partial rRNAs :: 5, 12, 4 (5S, 16S, 23S) tRNAs :: 82 ncRNAs :: 9 Pseudo Genes (total) :: 229 CDSs (without protein) :: 229 Pseudo Genes (ambiguous residues) :: 0 of 229 Pseudo Genes (frameshifted) :: 67 of 229 Pseudo Genes (incomplete) :: 143 of 229 Pseudo Genes (internal stop) :: 48 of 229 Pseudo Genes (multiple problems) :: 26 of 229 Pseudo Genes (short protein) :: 1 of 229 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..21114 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="EC72_42" /strain="EC_72" /isolation_source="water from electronic waste dumpsite" /db_xref="taxon:562" /geo_loc_name="Nigeria: Lagos" /lat_lon="6.461 N 3.191 E" /collection_date="2017-08-10" /collected_by="Ikhimiukor Odion" gene <1..519 /gene="istA" /locus_tag="FHB19_RS20570" /old_locus_tag="FHB19_20460" /pseudo CDS <1..519 /gene="istA" /locus_tag="FHB19_RS20570" /old_locus_tag="FHB19_20460" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS21-like element IS100 family transposase" gene 516..1298 /gene="istB" /locus_tag="FHB19_RS20575" /old_locus_tag="FHB19_20465" CDS 516..1298 /gene="istB" /locus_tag="FHB19_RS20575" /old_locus_tag="FHB19_20465" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_858162.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS21-like element IS100kyp family helper ATPase IstB" /protein_id="WP_001317493.1" /translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIER NENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD AALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE" gene 1389..1754 /locus_tag="FHB19_RS20580" /old_locus_tag="FHB19_20475" CDS 1389..1754 /locus_tag="FHB19_RS20580" /old_locus_tag="FHB19_20475" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001280452.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /GO_process="GO:0006576 - biogenic amine metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="EutP/PduV family microcompartment system protein" /protein_id="WP_001280456.1" /translation="MSDITISLPKEVNGYVICSTRIRHILAIRKSILMQIYMLFRQQA GISALRQELEVKTPYRAMNHPVIGVVTKADLASMEHISLVKCWLREAGAHNVLVTSAV NNNGVTELFSLLHTEDVCR" gene complement(1855..2184) /gene="tmaR" /locus_tag="FHB19_RS20585" /old_locus_tag="FHB19_20480" CDS complement(1855..2184) /gene="tmaR" /locus_tag="FHB19_RS20585" /old_locus_tag="FHB19_20480" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310836.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF496 family protein" /protein_id="WP_000450409.1" /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE MKNGEAK" gene complement(2356..3414) /gene="yeeA" /locus_tag="FHB19_RS20590" /old_locus_tag="FHB19_20485" CDS complement(2356..3414) /gene="yeeA" /locus_tag="FHB19_RS20590" /old_locus_tag="FHB19_20485" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416512.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FUSC family protein" /protein_id="WP_001200891.1" /translation="MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPE STWPLVTMVVIMGPISFWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCA AAMFLCGWLALGKKPYQGLLIGVTLAIVVGSPTGEIDTALWRSGDVILGSLLAMLFTG IWPQRAFIHWRIQLAKSLTEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIA PASKETRIPKSIYEGIQTINRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQ QILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNME TAHQLELLSNLICRALRK" gene complement(3613..4086) /gene="sbmC" /locus_tag="FHB19_RS20595" /old_locus_tag="FHB19_20490" CDS complement(3613..4086) /gene="sbmC" /locus_tag="FHB19_RS20595" /old_locus_tag="FHB19_20490" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310838.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor SbmC" /protein_id="WP_001105412.1" /translation="MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDNKNIVP KEWVAVYYDNPDETPAEKLRCDTVVTVPNNFTLPENSEGVILTEISGGQYAVAVARVV GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH" gene complement(4205..5371) /gene="dacD" /locus_tag="FHB19_RS20600" /old_locus_tag="FHB19_20495" CDS complement(4205..5371) /gene="dacD" /locus_tag="FHB19_RS20600" /old_locus_tag="FHB19_20495" /EC_number="3.4.16.4" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416514.4" /GO_function="GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="serine-type D-Ala-D-Ala carboxypeptidase DacD" /protein_id="WP_000830155.1" /translation="MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDY TTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVF VGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRN GLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLR WGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLD GKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGGMFSRLSDYFHHKA" gene 5580..7007 /gene="sbcB" /locus_tag="FHB19_RS20605" /old_locus_tag="FHB19_20500" CDS 5580..7007 /gene="sbcB" /locus_tag="FHB19_RS20605" /old_locus_tag="FHB19_20500" /EC_number="3.1.11.1" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416515.1" /GO_function="GO:0000175 - 3'-5'-RNA exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008310 - single-stranded DNA 3'-5' DNA exonuclease activity [Evidence IEA]" /GO_process="GO:0006281 - DNA repair [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease I" /protein_id="WP_000980601.1" /translation="MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG EPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGY NNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLM ALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDS DTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNL KILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLP ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQML AQQYADDKEKVALLKALWQYAEEIV" gene complement(7050..7277) /gene="tsuB" /locus_tag="FHB19_RS20610" /old_locus_tag="FHB19_20505" CDS complement(7050..7277) /gene="tsuB" /locus_tag="FHB19_RS20610" /old_locus_tag="FHB19_20505" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310841.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiosulfate utilization sulfurtransferase TsuB/YeeD" /protein_id="WP_000985273.1" /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE AIPQWAAEEGHAITDYQQIGDAAWSITVQKA" gene complement(7291..8349) /gene="tsuA" /locus_tag="FHB19_RS20615" /old_locus_tag="FHB19_20510" CDS complement(7291..8349) /gene="tsuA" /locus_tag="FHB19_RS20615" /old_locus_tag="FHB19_20510" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416517.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiosulfate utilization transporter TsuA/YeeE" /protein_id="WP_000492305.1" /translation="MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIAKNNRMFYA LLIAISVQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLGIVLAGGCATGTWYRA GEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSIAETFNLSVWPLVAVL LVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLS EATGRMFGLGITSPTANILQFLVAGDVKYINWGVFLVLGIFVGSFIAAKASREFRVRA ADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASW LVYVRPQRKARLATAAAN" gene complement(8528..9886) /gene="plaP" /locus_tag="FHB19_RS20620" /old_locus_tag="FHB19_20515" CDS complement(8528..9886) /gene="plaP" /locus_tag="FHB19_RS20620" /old_locus_tag="FHB19_20515" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416518.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="putrescine/proton symporter PlaP" /protein_id="WP_000019197.1" /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED VA" gene complement(9876..9938) /gene="yoeI" /locus_tag="FHB19_RS20625" /old_locus_tag="FHB19_20520" CDS complement(9876..9938) /gene="yoeI" /locus_tag="FHB19_RS20625" /old_locus_tag="FHB19_20520" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_002791246.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="membrane protein YoeI" /protein_id="WP_010723108.1" /translation="MGQFFAYATVITVKENDHVA" gene complement(10153..11082) /gene="yeeY" /locus_tag="FHB19_RS20630" /old_locus_tag="FHB19_20525" CDS complement(10153..11082) /gene="yeeY" /locus_tag="FHB19_RS20630" /old_locus_tag="FHB19_20525" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416519.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR substrate-binding domain-containing protein" /protein_id="WP_000803360.1" /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG FSRLGDLEQVFAVAPHHPLAMEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE AITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI" gene complement(11128..11952) /gene="yeeZ" /locus_tag="FHB19_RS20635" /old_locus_tag="FHB19_20530" CDS complement(11128..11952) /gene="yeeZ" /locus_tag="FHB19_RS20635" /old_locus_tag="FHB19_20530" /EC_number="1.1.1.290" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310845.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="SDR family oxidoreductase" /protein_id="WP_000754762.1" /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEASRMSG IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAH RIPRIIFTSSTSVYGDAQGTVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE" gene complement(12035..12289) /gene="yoeB" /locus_tag="FHB19_RS20640" /old_locus_tag="FHB19_20535" CDS complement(12035..12289) /gene="yoeB" /locus_tag="FHB19_RS20640" /old_locus_tag="FHB19_20535" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_707909.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type II toxin-antitoxin system mRNA interferase toxin YoeB" /protein_id="WP_000767829.1" /translation="MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGK PEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY" gene complement(12286..12537) /gene="yefM" /locus_tag="FHB19_RS20645" /old_locus_tag="FHB19_20540" CDS complement(12286..12537) /gene="yefM" /locus_tag="FHB19_RS20645" /old_locus_tag="FHB19_20540" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416521.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YoeB-YefM toxin-antitoxin system antitoxin YefM" /protein_id="WP_001259255.1" /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE" gene 12820..12870 /gene="hisL" /locus_tag="FHB19_RS20650" /old_locus_tag="FHB19_20545" CDS 12820..12870 /gene="hisL" /locus_tag="FHB19_RS20650" /old_locus_tag="FHB19_20545" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416522.1" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="his operon leader peptide" /protein_id="WP_001364200.1" /translation="MTRVQFKHHHHHHHPD" misc_feature 12846..12969 /inference="COORDINATES: nucleotide motif:Rfam:14.4:RF00514" /inference="COORDINATES: profile:INFERNAL:1.1.5" /note="His leader region; Derived by automated computational analysis using gene prediction method: cmsearch." /db_xref="RFAM:RF00514" gene 13016..13915 /gene="hisG" /locus_tag="FHB19_RS20655" /old_locus_tag="FHB19_20550" CDS 13016..13915 /gene="hisG" /locus_tag="FHB19_RS20655" /old_locus_tag="FHB19_20550" /EC_number="2.4.2.17" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005128078.1" /GO_component="GO:0005737 - cytoplasm [Evidence IEA]" /GO_function="GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="WP_000131782.1" /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE TMEKLKALGASSILVLPIEKMME" gene 13921..15219 /gene="hisD" /locus_tag="FHB19_RS20660" /old_locus_tag="FHB19_20555" CDS 13921..15219 /gene="hisD" /locus_tag="FHB19_RS20660" /old_locus_tag="FHB19_20555" /EC_number="1.1.1.23" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001456251.1" /GO_function="GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="WP_001743908.1" /translation="MSFNTIIDWNSCTAEEQRQLLMRPAISASESITRTVNDILDNVK ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSEELKQAMAVAVKNIETFHTAQ KLPPVDVETQPGVRCQQVTRPVALVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDTD MAHQVAEAVERQLAELPRAETARQALSASRLIVTKDLAQCVEISNQYGPEHLIIQTRN ARELVDGITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKE" gene 15222..16292 /gene="hisC" /locus_tag="FHB19_RS20665" /old_locus_tag="FHB19_20560" CDS 15222..16292 /gene="hisC" /locus_tag="FHB19_RS20665" /old_locus_tag="FHB19_20560" /EC_number="2.6.1.9" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416525.1" /GO_function="GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="histidinol-phosphate transaminase" /protein_id="WP_000108941.1" /translation="MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA ILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER EYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL RITVGTREESQRVIDALRAEQV" gene 16292..17359 /gene="hisB" /locus_tag="FHB19_RS20670" /old_locus_tag="FHB19_20565" CDS 16292..17359 /gene="hisB" /locus_tag="FHB19_RS20670" /old_locus_tag="FHB19_20565" /EC_number="3.1.3.15" /EC_number="4.2.1.19" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310850.2" /GO_function="GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB" /protein_id="WP_000080136.1" /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQ KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD CRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDREILNWPMIGE QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG RTLRQAIRVEGDTLPSSKGVL" gene 17359..17949 /gene="hisH" /locus_tag="FHB19_RS20675" /old_locus_tag="FHB19_20570" CDS 17359..17949 /gene="hisH" /locus_tag="FHB19_RS20675" /old_locus_tag="FHB19_20570" /EC_number="4.3.2.10" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005128083.1" /GO_function="GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisH" /protein_id="WP_001103560.1" /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM" gene 17949..18686 /gene="hisA" /locus_tag="FHB19_RS20680" /old_locus_tag="FHB19_20575" CDS 17949..18686 /gene="hisA" /locus_tag="FHB19_RS20680" /old_locus_tag="FHB19_20575" /EC_number="5.3.1.16" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310852.2" /GO_function="GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase" /protein_id="WP_000586449.1" /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAE VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG VRGVIVGRALLEGKFTVKEAIACWQNA" gene 18668..19444 /gene="hisF" /locus_tag="FHB19_RS20685" /old_locus_tag="FHB19_20580" CDS 18668..19444 /gene="hisF" /locus_tag="FHB19_RS20685" /old_locus_tag="FHB19_20580" /EC_number="4.3.2.10" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310853.1" /GO_function="GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="WP_000880192.1" /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI NSPALADPTLITRLADRFGVQCIVVGIDTWYDGETGKYHVNQYTGDESRTRVTQWETL DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC" gene 19438..20049 /gene="hisIE" /locus_tag="FHB19_RS20690" /old_locus_tag="FHB19_20585" CDS 19438..20049 /gene="hisIE" /locus_tag="FHB19_RS20690" /old_locus_tag="FHB19_20585" /EC_number="3.5.4.19" /EC_number="3.6.1.31" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310854.1" /GO_function="GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]" /GO_process="GO:0000105 - L-histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE" /protein_id="WP_000954919.1" /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPQALDK TIESGKVTFFSRTKQRLWTKGETSGNFLNVVNITPDCDNDTLLLLANPIGPTCHKGTS SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ" gene complement(20146..>21000) /gene="wzzB" /locus_tag="FHB19_RS20695" /old_locus_tag="FHB19_20590" /pseudo CDS complement(20146..>21000) /gene="wzzB" /locus_tag="FHB19_RS20695" /old_locus_tag="FHB19_20590" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416531.4" /GO_process="GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]" /note="incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="LPS O-antigen chain length determinant protein WzzB" gene 21057..>21114 /locus_tag="FHB19_RS22910" /old_locus_tag="FHB19_20595" CDS 21057..>21114 /locus_tag="FHB19_RS22910" /old_locus_tag="FHB19_20595" /inference="COORDINATES: protein motif:HMM:NF015750.5" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS1 family transposase" /protein_id="WP_097491765.1" /translation="MASVSISCPSCSATDGVVR" CONTIG join(VDAZ01000042.1:1..21114) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on