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NCBI Reference Sequence: NZ_VNJG01000032.1
FASTA Graphics
LOCUS NZ_VNJG01000032 54054 bp DNA linear CON 10-JUL-2024 DEFINITION Escherichia coli strain T75 NODE_32_length_54054_cov_42.483, whole genome shotgun sequence. ACCESSION NZ_VNJG01000032 NZ_VNJG01000000 VERSION NZ_VNJG01000032.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN12353734 Assembly: GCF_008553705.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 54054) AUTHORS Kittana,H. and Ramer-Tait,A.E. TITLE Establishing the phenotypic basis of adherent-invasive Escherichia coli (AIEC) pathogenicity in intestinal inflammation JOURNAL Unpublished REFERENCE 2 (bases 1 to 54054) AUTHORS Kittana,H. and Ramer-Tait,A.E. TITLE Direct Submission JOURNAL Submitted (24-JUL-2019) Animal Science, University of Nebraska - Lincoln, 3940 Fair Street, Lincoln, NE 68583-0908, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to VNJG01000032.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.10.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 102.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_008553705.1-RS_2024_07_10 Annotation Date :: 07/10/2024 03:20:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,588 CDSs (total) :: 4,489 Genes (coding) :: 4,237 CDSs (with protein) :: 4,237 Genes (RNA) :: 99 rRNAs :: 8, 1, 3 (5S, 16S, 23S) complete rRNAs :: 8, 1, 1 (5S, 16S, 23S) partial rRNAs :: 2 (23S) tRNAs :: 75 ncRNAs :: 12 Pseudo Genes (total) :: 252 CDSs (without protein) :: 252 Pseudo Genes (ambiguous residues) :: 0 of 252 Pseudo Genes (frameshifted) :: 119 of 252 Pseudo Genes (incomplete) :: 137 of 252 Pseudo Genes (internal stop) :: 37 of 252 Pseudo Genes (multiple problems) :: 38 of 252 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..54054 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="NODE_32_length_54054_cov_42.483" /strain="T75" /isolation_source="colon epithelium" /host="Homo sapiens" /db_xref="taxon:562" /collected_by="Kenneth Simpson" gene <1..71 /locus_tag="F4W03_RS23255" CDS <1..71 /locus_tag="F4W03_RS23255" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_005224844.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="hypothetical protein" /protein_id="WP_223349232.1" /translation="MALVRALNKMTKAGMPESVRIA" gene 451..1098 /gene="narP" /locus_tag="F4W03_RS18425" CDS 451..1098 /gene="narP" /locus_tag="F4W03_RS18425" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311109.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nitrate/nitrite response regulator protein NarP" /protein_id="WP_001113637.1" /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASA IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ" gene complement(1309..2361) /gene="ccmH" /locus_tag="F4W03_RS18430" CDS complement(1309..2361) /gene="ccmH" /locus_tag="F4W03_RS18430" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416698.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH" /protein_id="WP_001211575.1" /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV LLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIV AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIE RSIAQAMQHLSPQESK" gene complement(2358..2915) /gene="dsbE" /locus_tag="F4W03_RS18435" CDS complement(2358..2915) /gene="dsbE" /locus_tag="F4W03_RS18435" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311111.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbE" /protein_id="WP_000824439.1" /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA GDLNPRVWEEEIKPLWEKYSKEAAQ" gene complement(2912..4855) /gene="ccmF" /locus_tag="F4W03_RS18440" CDS complement(2912..4855) /gene="ccmF" /locus_tag="F4W03_RS18440" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416700.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis heme lyase CcmF" /protein_id="WP_000982447.1" /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTRDGKPETVLYAEKRY YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG LLCLFDPRYRKRVSPQKTAPEAV" gene complement(4852..5331) /gene="ccmE" /locus_tag="F4W03_RS18445" CDS complement(4852..5331) /gene="ccmE" /locus_tag="F4W03_RS18445" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311113.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c maturation protein CcmE" /protein_id="WP_001026418.1" /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" gene complement(5328..5537) /gene="ccmD" /locus_tag="F4W03_RS18450" CDS complement(5328..5537) /gene="ccmD" /locus_tag="F4W03_RS18450" /EC_number="7.6.2.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311114.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_process="GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="heme exporter protein CcmD" /protein_id="WP_000186540.1" /translation="MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR AILRGVAQQRAREARLRAAQQQEAA" gene complement(5534..6271) /gene="ccmC" /locus_tag="F4W03_RS18455" CDS complement(5534..6271) /gene="ccmC" /locus_tag="F4W03_RS18455" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311115.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="heme exporter protein CcmC" /protein_id="WP_001295447.1" /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL MRMRNLILLMEKRRPWVSELILKRGRK" gene complement(6313..6975) /gene="ccmB" /locus_tag="F4W03_RS18460" CDS complement(6313..6975) /gene="ccmB" /locus_tag="F4W03_RS18460" /EC_number="7.6.2.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311116.1" /GO_function="GO:0015232 - heme transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0015886 - heme transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="heme exporter protein CcmB" /protein_id="WP_000971730.1" /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS IQ" gene complement(6972..7595) /gene="ccmA" /locus_tag="F4W03_RS18465" CDS complement(6972..7595) /gene="ccmA" /locus_tag="F4W03_RS18465" /EC_number="7.6.2.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416705.2" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0017004 - cytochrome complex assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis heme-transporting ATPase CcmA" /protein_id="WP_000525587.1" /translation="MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTT LLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHR DGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAID VNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" gene complement(7608..8210) /gene="napC" /locus_tag="F4W03_RS18470" CDS complement(7608..8210) /gene="napC" /locus_tag="F4W03_RS18470" /EC_number="7.1.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311118.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c-type protein NapC" /protein_id="WP_000528376.1" /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF" gene complement(8220..8669) /gene="napB" /locus_tag="F4W03_RS18475" CDS complement(8220..8669) /gene="napB" /locus_tag="F4W03_RS18475" /EC_number="1.9.6.1" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311119.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nitrate reductase cytochrome c-type subunit" /protein_id="WP_000835174.1" /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE GAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK" gene complement(8666..9529) /gene="napH" /locus_tag="F4W03_RS18480" CDS complement(8666..9529) /gene="napH" /locus_tag="F4W03_RS18480" /EC_number="7.1.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416708.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="quinol dehydrogenase ferredoxin subunit NapH" /protein_id="WP_000013515.1" /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWI NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV AATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT ITTRWSSGAKS" gene complement(9516..10211) /gene="napG" /locus_tag="F4W03_RS18485" CDS complement(9516..10211) /gene="napG" /locus_tag="F4W03_RS18485" /EC_number="7.1.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416709.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ferredoxin-type protein NapG" /protein_id="WP_000091293.1" /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA ITLELERNTRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGGLGHH YRFGWLEGNNGKS" gene complement(10218..12704) /gene="napA" /locus_tag="F4W03_RS18490" CDS complement(10218..12704) /gene="napA" /locus_tag="F4W03_RS18490" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416710.1" /GO_component="GO:0009325 - nitrate reductase complex [Evidence IEA]" /GO_function="GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0008940 - nitrate reductase activity [Evidence IEA]" /GO_process="GO:0042126 - nitrate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="periplasmic nitrate reductase subunit alpha" /protein_id="WP_000778061.1" /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL RMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA QLVNKLTLDATDPLSKETDFKKCAVKLEKV" gene complement(12701..12964) /gene="napD" /locus_tag="F4W03_RS18495" CDS complement(12701..12964) /gene="napD" /locus_tag="F4W03_RS18495" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311123.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="chaperone NapD" /protein_id="WP_000557378.1" /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP" gene complement(12954..13448) /gene="napF" /locus_tag="F4W03_RS18500" CDS complement(12954..13448) /gene="napF" /locus_tag="F4W03_RS18500" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311124.1" /GO_function="GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ferredoxin-type protein NapF" /protein_id="WP_000686723.1" /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY LHAH" gene 13557..13721 /gene="yojO" /locus_tag="F4W03_RS22985" CDS 13557..13721 /gene="yojO" /locus_tag="F4W03_RS22985" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_009518801.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="protein YojO" /protein_id="WP_001310984.1" /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKYIYIAIDSPEI FLLVCSLIRI" gene 13835..14344 /gene="eco" /locus_tag="F4W03_RS18505" CDS 13835..14344 /gene="eco" /locus_tag="F4W03_RS18505" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008785302.1" /GO_function="GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="serine protease inhibitor ecotin" /protein_id="WP_000712249.1" /translation="MKKESKKMKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAE KGMKRQVIQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFD KVSSPVSTMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAE EKIDNAVVR" gene complement(14833..16479) /gene="mqo" /locus_tag="F4W03_RS18510" CDS complement(14833..16479) /gene="mqo" /locus_tag="F4W03_RS18510" /EC_number="1.1.5.4" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416714.1" /GO_function="GO:0008924 - L-malate dehydrogenase (quinone) activity [Evidence IEA]" /GO_process="GO:0006099 - tricarboxylic acid cycle [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="malate dehydrogenase (quinone)" /protein_id="WP_000758077.1" /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA TLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDAEKGGVLRLGTEVVSDQQGTIA ALLGASPGASTAAPIMLNLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE LQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQKEVADIAL" gene complement(16697..18340) /gene="yojI" /locus_tag="F4W03_RS18515" CDS complement(16697..18340) /gene="yojI" /locus_tag="F4W03_RS18515" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416715.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="microcin J25 efflux ABC transporter YojI" /protein_id="WP_000422182.1" /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETA DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR TPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQD NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA" gene complement(18416..19066) /gene="alkB" /locus_tag="F4W03_RS18520" CDS complement(18416..19066) /gene="alkB" /locus_tag="F4W03_RS18520" /EC_number="1.14.11.33" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416716.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA oxidative demethylase AlkB" /protein_id="WP_000884971.1" /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS PFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQR AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE" gene complement(19066..20130) /gene="ada" /locus_tag="F4W03_RS18525" CDS complement(19066..20130) /gene="ada" /locus_tag="F4W03_RS18525" /EC_number="2.1.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416717.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada" /protein_id="WP_000710375.1" /translation="MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA RHALRENVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPVTL EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCELGRCLVAESERGICAILLGDD DATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW QALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIIIPCHRVVRGDGTLSGY RWGVSRKAQLLRREAENEER" gene complement(20204..21259) /gene="apbE" /locus_tag="F4W03_RS18530" CDS complement(20204..21259) /gene="apbE" /locus_tag="F4W03_RS18530" /EC_number="2.7.1.180" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311130.1" /GO_process="GO:0017013 - protein flavinylation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FAD:protein FMN transferase ApbE" /protein_id="WP_000406064.1" /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA MADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQH LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR GMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF KTWMSPQFKSFLVSEKN" gene complement(21371..22474) /gene="ompC" /locus_tag="F4W03_RS18535" CDS complement(21371..22474) /gene="ompC" /locus_tag="F4W03_RS18535" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416719.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="porin OmpC" /protein_id="WP_000865582.1" /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF SDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLK FQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGGTYGSDNFMQQRGNGFATYRNTDFFGL VDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAI SSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANK AQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTY VDYKINLLDDNQFTRDAGINTDNIVALGLVYQF" gene 23213..25885 /gene="rcsD" /locus_tag="F4W03_RS18540" CDS 23213..25885 /gene="rcsD" /locus_tag="F4W03_RS18540" /EC_number="2.7.2.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416720.1" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /GO_function="GO:0009927 - histidine phosphotransfer kinase activity [Evidence IEA]" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphotransferase RcsD" /protein_id="WP_044067680.1" /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA WLKDKSYQIVDITHAIQKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST LPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEETDSVSIHFNS TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS SRSTENVPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ AQRLYEKNQQGRMIFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH FPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL" gene 25902..26552 /gene="rcsB" /locus_tag="F4W03_RS18545" CDS 25902..26552 /gene="rcsB" /locus_tag="F4W03_RS18545" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311133.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="response regulator transcription factor RcsB" /protein_id="WP_001061917.1" /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD" gene complement(26752..29601) /gene="rcsC" /locus_tag="F4W03_RS18550" CDS complement(26752..29601) /gene="rcsC" /locus_tag="F4W03_RS18550" /EC_number="2.7.13.3" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416722.2" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]" /GO_process="GO:0018106 - peptidyl-histidine phosphorylation [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase RcsC" /protein_id="WP_000876011.1" /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSW FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC LESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS" gene 29768..31594 /gene="atoS" /locus_tag="F4W03_RS18555" CDS 29768..31594 /gene="atoS" /locus_tag="F4W03_RS18555" /EC_number="2.7.13.3" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416723.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase AtoS" /protein_id="WP_000559125.1" /translation="MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVL SEKEKKLSAVVNLLNQALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAG YYNKMLDAIITYAPSALYQNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSML PIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANI DIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVI AIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALE ISFPGRDRTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATLGEL MAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVIQQLLEFSRP RHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTTKASGTGL GLALSQRIINAHQGDIRVASLPGYGATFTLILPINPQGNQTV" gene 31591..32976 /gene="atoC" /locus_tag="F4W03_RS18560" CDS 31591..32976 /gene="atoC" /locus_tag="F4W03_RS18560" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416724.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetoacetate metabolism transcriptional regulator AtoC" /protein_id="WP_000125301.1" /translation="MTAINRILIVDDEDNVRRMLSTAFALQGFETNCANNGRTALHLF ADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDY VIKPFDLDELNLIVQRALQLQSMKKEISHLHQALSTSWQWGHILTNSPAMMDICKDTA KIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKF SSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQ PVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYK LQEYGIDPADV" gene 33172..33834 /gene="atoD" /locus_tag="F4W03_RS18565" CDS 33172..33834 /gene="atoD" /locus_tag="F4W03_RS18565" /EC_number="2.8.3.9" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416725.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetate CoA-transferase subunit alpha" /protein_id="WP_000850540.1" /translation="MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGV RDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGT LIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCD TLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQE SK" gene 33834..34484 /gene="atoA" /locus_tag="F4W03_RS18570" CDS 33834..34484 /gene="atoA" /locus_tag="F4W03_RS18570" /EC_number="2.8.3.8" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416726.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetate CoA-transferase subunit beta" /protein_id="WP_000339065.1" /translation="MDAKQRIARRVAQELRDGDIVNLGIGLPTMVANYLPEGIHITLQ SENGFLGLGPVTTAHPDLVNAGGQPCGVLPGAAMFDSAMSFALIRGGHIDACVLGGLQ VDEEANLANWVVPGKMVPGMGGAMDLVTGSRKVIIAMEHCAKDGSAKILRRCTMPLTA QHAVHMLVTELAVFRFIDGKMWLTEIADGCDLATVRAKTEARFEVAADLNTQRGDL" gene 34481..35803 /gene="atoE" /locus_tag="F4W03_RS18575" CDS 34481..35803 /gene="atoE" /locus_tag="F4W03_RS18575" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416727.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TIGR00366 family protein" /protein_id="WP_000580275.1" /translation="MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPI SMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVT FFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPL LAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPK LLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNL MFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFI NVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYG EQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF" gene 35834..37018 /gene="atoB" /locus_tag="F4W03_RS18580" CDS 35834..37018 /gene="atoB" /locus_tag="F4W03_RS18580" /EC_number="2.3.1.9" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416728.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="WP_000786547.1" /translation="MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKID SQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAI QAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGI TAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDE FPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARI KSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFD SEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIER LN" gene complement(37092..37868) /gene="yfaP" /locus_tag="F4W03_RS18585" CDS complement(37092..37868) /gene="yfaP" /locus_tag="F4W03_RS18585" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416729.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YfaP family protein" /protein_id="WP_001225852.1" /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSF ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETE LTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW" gene complement(37873..39522) /gene="yfaQ" /locus_tag="F4W03_RS18590" CDS complement(37873..39522) /gene="yfaQ" /locus_tag="F4W03_RS18590" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416730.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YfaQ family protein" /protein_id="WP_001104551.1" /translation="MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGV TKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST TAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE AKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTWARTMTAWT QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS TCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD" gene complement(39523..44037) /locus_tag="F4W03_RS18595" CDS complement(39523..44037) /locus_tag="F4W03_RS18595" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000536590.1" /GO_function="GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]" /GO_process="GO:0010951 - negative regulation of endopeptidase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="alpha-2-macroglobulin family protein" /protein_id="WP_000536564.1" /translation="MGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLE APGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWL WDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLV KQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYR ATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGT LQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKV IGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGG YELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVK NARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLL TVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVT YEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGST AHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTL QRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTH YQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRT SSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKA YFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAG LFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQV QDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLD ALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGAR FTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRA LVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADA VANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAIL SGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVP DILSFGDELSPQNVQVRWREPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSN EIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQL LEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAA GSEWTGMQVK" gene complement(44061..44684) /gene="yfaT" /locus_tag="F4W03_RS18600" CDS complement(44061..44684) /gene="yfaT" /locus_tag="F4W03_RS18600" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_311139.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1175 domain-containing protein" /protein_id="WP_001295211.1" /translation="MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQ GPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNW NQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYH TGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR" gene complement(44681..46369) /gene="yfaA" /locus_tag="F4W03_RS18605" CDS complement(44681..46369) /gene="yfaA" /locus_tag="F4W03_RS18605" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416733.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2138 domain-containing protein" /protein_id="WP_000012305.1" /translation="MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSP LVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE GSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPL LFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFK DDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMP SFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAE EMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNI GAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLA MQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLT SLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL" gene complement(46518..49145) /gene="gyrA" /locus_tag="F4W03_RS18610" CDS complement(46518..49145) /gene="gyrA" /locus_tag="F4W03_RS18610" /EC_number="5.6.2.2" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416734.1" /GO_component="GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]" /GO_function="GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]" /GO_process="GO:0006265 - DNA topological change [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA topoisomerase (ATP-hydrolyzing) subunit A" /protein_id="WP_001281225.1" /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYML VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA EGDDEIAPEVDVDDEPEEE" gene 49292..50014 /gene="ubiG" /locus_tag="F4W03_RS18615" CDS 49292..50014 /gene="ubiG" /locus_tag="F4W03_RS18615" /EC_number="2.1.1.222" /EC_number="2.1.1.64" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_708121.1" /GO_function="GO:0061542 - 3-demethylubiquinol-n 3-O-methyltransferase activity [Evidence IEA]" /GO_process="GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG" /protein_id="WP_000990756.1" /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG IQVDYVQETVEKHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP ITNSFKLGPGVDVNYMLHTQNK" gene complement(50142..53894) /gene="yfaL" /locus_tag="F4W03_RS18620" CDS complement(50142..53894) /gene="yfaL" /locus_tag="F4W03_RS18620" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416736.1" /GO_component="GO:0019867 - outer membrane [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AIDA-I family autotransporter adhesin YfaL/EhaC" /protein_id="WP_001220074.1" /translation="MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQ ASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFAN NTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSK HPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSA AGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSG DLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQN QAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSY VLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQS GTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANN NSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHG RDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSA VRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLR LTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNT SGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVN SITGIGEPTSTGIKMVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLR SQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAF MMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEW MLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYA WFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAA NRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAV KQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW" gene 53983..>54054 /locus_tag="F4W03_RS18625" CDS 53983..>54054 /locus_tag="F4W03_RS18625" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS1 family transposase" /protein_id="WP_001568368.1" /translation="MASVSISCPSCSATDGVVRNGKST" CONTIG join(VNJG01000032.1:1..54054) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
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