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Pseudoalteromonas sp. C1 strain C1(2019) scaffold39, whole genome shotgun sequence

NCBI Reference Sequence: NZ_WTKR01000039.1

FASTA Graphics 

LOCUS       NZ_WTKR01000039         6733 bp    DNA     linear   CON 23-MAY-2024
DEFINITION  Pseudoalteromonas sp. C1 strain C1(2019) scaffold39, whole genome
            shotgun sequence.
ACCESSION   NZ_WTKR01000039 NZ_WTKR01000000
VERSION     NZ_WTKR01000039.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13567228
            Assembly: GCF_011378665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudoalteromonas sp. C1
  ORGANISM  Pseudoalteromonas sp. C1
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
REFERENCE   1  (bases 1 to 6733)
  AUTHORS   Cha,Q.
  TITLE     Comparison of alginate utilization pathway/gene cluster in
            culturable bacteria isolated from Arctic and Antarctic marine
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6733)
  AUTHORS   Cha,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2019) State Key Laboratory of Microbial
            Technology, Marine Biotechnology Research Center, Shandong
            University, No. 72 Binhai Road, Qingdao, Shandong 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WTKR01000039.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: GS De Novo Assembler v. 2.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 161.6x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011378665.1-RS_2024_05_23
            Annotation Date                   :: 05/23/2024 03:51:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,995
            CDSs (total)                      :: 3,882
            Genes (coding)                    :: 3,848
            CDSs (with protein)               :: 3,848
            Genes (RNA)                       :: 113
            rRNAs                             :: 2, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 7 (16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 7 of 34
            Pseudo Genes (incomplete)         :: 27 of 34
            Pseudo Genes (internal stop)      :: 9 of 34
            Pseudo Genes (multiple problems)  :: 6 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6733
                     /organism="Pseudoalteromonas sp. C1"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold39"
                     /strain="C1(2019)"
                     /isolation_source="beach"
                     /host="brown algae"
                     /db_xref="taxon:1354081"
                     /geo_loc_name="Arctic Ocean"
                     /collection_date="2011-07"
     gene            complement(<1..378)
                     /locus_tag="GQR37_RS19615"
                     /pseudo
     CDS             complement(<1..378)
                     /locus_tag="GQR37_RS19615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006793754.1"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(424..1500)
                     /locus_tag="GQR37_RS19620"
     CDS             complement(424..1500)
                     /locus_tag="GQR37_RS19620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_165723085.1"
                     /translation="MTFLKNHSVLCVLCVCFSLLLSGCSEPSSQSTKNTTAVDVFKYP
                     WVKEHKNHPEWPLEIREEVYGDADTFSTPRLMFWNKYKYSAVRTLWSSRLDGSDRRRI
                     IPEEVFQKLESISIHAPARSPDNRYIAISGYINDRATRQLYDTKEKKLITMSSGGGYP
                     WFNWTSDSENVIFYSDGKNFNYNVPTGELTSRPQIHHSGAAFLLPGDKEFLAVKHDGF
                     WIHKFNGEVVRKVNFGFPRKWEMLDHRISPDGKYLAFMTHIRPKAHFHWVNIANPEIE
                     HSEKGMGSNVIFSLDKDVTLKFGYNDFKRPTSRDEVPDIYSIMTKTNILTGEKKITRV
                     KEMGIWGLDTLGPIAITNVAAQGL"
     gene            complement(1662..6338)
                     /locus_tag="GQR37_RS19625"
     CDS             complement(1662..6338)
                     /locus_tag="GQR37_RS19625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016708987.1"
                     /GO_function="GO:0042834 - peptidoglycan binding [Evidence
                     IEA]; GO:0015288 - porin activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="WP_165723086.1"
                     /translation="MHDISKGSASPLVYLLTGYVKHNKPIGKLTPVANRIVIAEQPKS
                     ATYNTKKPIVLKTNKAGILSTINSDSLEVRQPFHAYMANNQRPIIIPPMESIGLIANN
                     NPRGWAKEFVDNLKNYSSSNTPLLELQTIPITNLKQPTENSEDDTYNKWYEREIIQKN
                     VKSIQAYVLAKTRAVVLSINPNIPLLSPGENIVLSSPIGRDIPATFVTETNLAVITGT
                     NKILPKGLYRVKIRLQRNTYEANIASWCTKSIKFDGTHYYYELAEMIHFDIKNEAGEF
                     DVINCDPLSVEEAIIKQFPRFYSHLISYAKDLKTEHATYDPKNISVKDENGKEIGRAK
                     VSDEPIKIASGFESFCHGWAVAKGRAQLAAGLINTDITASASNGNFTTNGKFVLGSKI
                     AKAIHTHLNETEDKTIQATLDSVFAMQDGQDAWKKLREARAAFTTDAWRQALAENLWR
                     LPANTPAAMESYNKSLGKKLGIPKVAMDAAGNALNIADLTTNIAALGQTTLQQFGTNI
                     PNLAQAKRHYKTVANDYFEHLSAKEIVKDVVIEGTFSLNSEQVTDDYRNTILQQSEAV
                     IKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQAGIDEARIEVLGL
                     GYAQPLINNKDEASRAQNRRVHIAAYAISQINVCPSREGMDSLERFRNLTVANDIKVD
                     ETGDDMAWQMINIALGVMAFIPITAPIAAAVAVIKAGGAIATSAANLMDEALLDNACK
                     QFYAEIQRDKRLGQECAANQGMMHELLSEYNKDGKTQQSTQWAAQFRLRSEAISGLMG
                     LLLRAQREGDKSQYYSNLERYKVKQYIENFLLGDSWALPNLPGASIRMDTFWVFLIDS
                     ITNQKQSKNGDKKALYGFSDNYSLLDKATRKAVVTDPENTLYLQSQSNPYGFYMMTVP
                     TVAREHNYITAEFQNYFPIHTFATQEKEGNKYLESFANTFEPVFSDYGEASYHHSAIY
                     YQDQTSKKWLPIIANKLKRLTPFTPIRVLVVFNDTMTGIAPITLKVTRCDGVNNELAY
                     KELVRPLVESELLNNEKHFAGKFGCVFTPFFQLGPKTYLGTKPMVHEEAFYSIINDSA
                     VEYYQDDNFSDMRYFIGAQVGSSREVVLPLMGERKDNSDEMIFESDTAEVLYALGIKN
                     KFVANEFYVDLNTKRNGGNEESLLIKDFLTSSSSSFVYPELFAGEKSIRILVRFGGEG
                     EPYLITSKIQRQGQFIRLFESEFAAAQSLGFKVRQFGDDIIFDDFDWNTQVDIMVVAT
                     CTELESDNYTKKLIGLDWRSVPCDLILQQTIGINDQGPKYKSKLCYLGKATRNANKGY
                     KTERILNKMVDTWHDDDYQFEDKWYDNQCQIDEQVGPEYEELIELLNNAGPYNEKGKQ
                     ARALLNWHNKDAEAFAGEEQVFVFAANFSLKYESPKRVEVNGLRPFGDIFTSQFSDMF
                     TDKEDRQYTMELGIASFNSAGNSGFNFNDIGSMTDKISNHGLQLKLPLPNPTNSNLPW
                     GKTLPEADLKELAAELNSDHSTPSQKDLYKRLSEEGLTEDEVKQWFVEDATKKKVRPL
                     GAFKSE"
     gene            complement(6341..>6733)
                     /locus_tag="GQR37_RS19630"
                     /pseudo
     CDS             complement(6341..>6733)
                     /locus_tag="GQR37_RS19630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582213.1"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
CONTIG      join(WTKR01000039.1:1..6733)
//
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