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NCBI Reference Sequence: NZ_WTKR01000039.1
FASTA Graphics
LOCUS NZ_WTKR01000039 6733 bp DNA linear CON 23-MAY-2024 DEFINITION Pseudoalteromonas sp. C1 strain C1(2019) scaffold39, whole genome shotgun sequence. ACCESSION NZ_WTKR01000039 NZ_WTKR01000000 VERSION NZ_WTKR01000039.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN13567228 Assembly: GCF_011378665.1 KEYWORDS WGS; RefSeq. SOURCE Pseudoalteromonas sp. C1 ORGANISM Pseudoalteromonas sp. C1 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas. REFERENCE 1 (bases 1 to 6733) AUTHORS Cha,Q. TITLE Comparison of alginate utilization pathway/gene cluster in culturable bacteria isolated from Arctic and Antarctic marine environment JOURNAL Unpublished REFERENCE 2 (bases 1 to 6733) AUTHORS Cha,Q. TITLE Direct Submission JOURNAL Submitted (16-DEC-2019) State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, No. 72 Binhai Road, Qingdao, Shandong 266237, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to WTKR01000039.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: GS De Novo Assembler v. 2.8 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 161.6x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_011378665.1-RS_2024_05_23 Annotation Date :: 05/23/2024 03:51:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,995 CDSs (total) :: 3,882 Genes (coding) :: 3,848 CDSs (with protein) :: 3,848 Genes (RNA) :: 113 rRNAs :: 2, 2, 7 (5S, 16S, 23S) complete rRNAs :: 2 (5S) partial rRNAs :: 2, 7 (16S, 23S) tRNAs :: 98 ncRNAs :: 4 Pseudo Genes (total) :: 34 CDSs (without protein) :: 34 Pseudo Genes (ambiguous residues) :: 0 of 34 Pseudo Genes (frameshifted) :: 7 of 34 Pseudo Genes (incomplete) :: 27 of 34 Pseudo Genes (internal stop) :: 9 of 34 Pseudo Genes (multiple problems) :: 6 of 34 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6733 /organism="Pseudoalteromonas sp. C1" /mol_type="genomic DNA" /submitter_seqid="scaffold39" /strain="C1(2019)" /isolation_source="beach" /host="brown algae" /db_xref="taxon:1354081" /geo_loc_name="Arctic Ocean" /collection_date="2011-07" gene complement(<1..378) /locus_tag="GQR37_RS19615" /pseudo CDS complement(<1..378) /locus_tag="GQR37_RS19615" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006793754.1" /note="incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" gene complement(424..1500) /locus_tag="GQR37_RS19620" CDS complement(424..1500) /locus_tag="GQR37_RS19620" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007582209.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_165723085.1" /translation="MTFLKNHSVLCVLCVCFSLLLSGCSEPSSQSTKNTTAVDVFKYP WVKEHKNHPEWPLEIREEVYGDADTFSTPRLMFWNKYKYSAVRTLWSSRLDGSDRRRI IPEEVFQKLESISIHAPARSPDNRYIAISGYINDRATRQLYDTKEKKLITMSSGGGYP WFNWTSDSENVIFYSDGKNFNYNVPTGELTSRPQIHHSGAAFLLPGDKEFLAVKHDGF WIHKFNGEVVRKVNFGFPRKWEMLDHRISPDGKYLAFMTHIRPKAHFHWVNIANPEIE HSEKGMGSNVIFSLDKDVTLKFGYNDFKRPTSRDEVPDIYSIMTKTNILTGEKKITRV KEMGIWGLDTLGPIAITNVAAQGL" gene complement(1662..6338) /locus_tag="GQR37_RS19625" CDS complement(1662..6338) /locus_tag="GQR37_RS19625" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016708987.1" /GO_function="GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="OmpA family protein" /protein_id="WP_165723086.1" /translation="MHDISKGSASPLVYLLTGYVKHNKPIGKLTPVANRIVIAEQPKS ATYNTKKPIVLKTNKAGILSTINSDSLEVRQPFHAYMANNQRPIIIPPMESIGLIANN NPRGWAKEFVDNLKNYSSSNTPLLELQTIPITNLKQPTENSEDDTYNKWYEREIIQKN VKSIQAYVLAKTRAVVLSINPNIPLLSPGENIVLSSPIGRDIPATFVTETNLAVITGT NKILPKGLYRVKIRLQRNTYEANIASWCTKSIKFDGTHYYYELAEMIHFDIKNEAGEF DVINCDPLSVEEAIIKQFPRFYSHLISYAKDLKTEHATYDPKNISVKDENGKEIGRAK VSDEPIKIASGFESFCHGWAVAKGRAQLAAGLINTDITASASNGNFTTNGKFVLGSKI AKAIHTHLNETEDKTIQATLDSVFAMQDGQDAWKKLREARAAFTTDAWRQALAENLWR LPANTPAAMESYNKSLGKKLGIPKVAMDAAGNALNIADLTTNIAALGQTTLQQFGTNI PNLAQAKRHYKTVANDYFEHLSAKEIVKDVVIEGTFSLNSEQVTDDYRNTILQQSEAV IKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQAGIDEARIEVLGL GYAQPLINNKDEASRAQNRRVHIAAYAISQINVCPSREGMDSLERFRNLTVANDIKVD ETGDDMAWQMINIALGVMAFIPITAPIAAAVAVIKAGGAIATSAANLMDEALLDNACK QFYAEIQRDKRLGQECAANQGMMHELLSEYNKDGKTQQSTQWAAQFRLRSEAISGLMG LLLRAQREGDKSQYYSNLERYKVKQYIENFLLGDSWALPNLPGASIRMDTFWVFLIDS ITNQKQSKNGDKKALYGFSDNYSLLDKATRKAVVTDPENTLYLQSQSNPYGFYMMTVP TVAREHNYITAEFQNYFPIHTFATQEKEGNKYLESFANTFEPVFSDYGEASYHHSAIY YQDQTSKKWLPIIANKLKRLTPFTPIRVLVVFNDTMTGIAPITLKVTRCDGVNNELAY KELVRPLVESELLNNEKHFAGKFGCVFTPFFQLGPKTYLGTKPMVHEEAFYSIINDSA VEYYQDDNFSDMRYFIGAQVGSSREVVLPLMGERKDNSDEMIFESDTAEVLYALGIKN KFVANEFYVDLNTKRNGGNEESLLIKDFLTSSSSSFVYPELFAGEKSIRILVRFGGEG EPYLITSKIQRQGQFIRLFESEFAAAQSLGFKVRQFGDDIIFDDFDWNTQVDIMVVAT CTELESDNYTKKLIGLDWRSVPCDLILQQTIGINDQGPKYKSKLCYLGKATRNANKGY KTERILNKMVDTWHDDDYQFEDKWYDNQCQIDEQVGPEYEELIELLNNAGPYNEKGKQ ARALLNWHNKDAEAFAGEEQVFVFAANFSLKYESPKRVEVNGLRPFGDIFTSQFSDMF TDKEDRQYTMELGIASFNSAGNSGFNFNDIGSMTDKISNHGLQLKLPLPNPTNSNLPW GKTLPEADLKELAAELNSDHSTPSQKDLYKRLSEEGLTEDEVKQWFVEDATKKKVRPL GAFKSE" gene complement(6341..>6733) /locus_tag="GQR37_RS19630" /pseudo CDS complement(6341..>6733) /locus_tag="GQR37_RS19630" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007582213.1" /note="incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" CONTIG join(WTKR01000039.1:1..6733) //
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