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Escherichia coli strain 621178, whole genome shotgun sequencing project

GenBank: PNSU00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       PNSU01000000             206 rc    DNA     linear   BCT 14-MAY-2020
DEFINITION  Escherichia coli strain 621178, whole genome shotgun sequencing
            project.
ACCESSION   PNSU00000000
VERSION     PNSU00000000.1
DBLINK      BioProject: PRJNA421191
            BioSample: SAMN08161215
KEYWORDS    WGS.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 206)
  AUTHORS   Hazen,T.H., Nagaraj,S., Sen,S., Permala-Booth,J., Del Canto,F.,
            Vidal,R., Barry,E.M., Bitoun,J.P., Chen,W.H., Tennant,S.M. and
            Rasko,D.A.
  TITLE     Genome and Functional Characterization of Colonization Factor
            Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only
            Enterotoxigenic Escherichia coli Reveals Lineage and Geographic
            Variation
  JOURNAL   mSystems 4 (1), e00329-18 (2019)
   PUBMED   30944874
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 206)
  AUTHORS   Hazen,T.H. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2018) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 801 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     The Escherichia coli whole genome shotgun (WGS) project has the
            project accession PNSU00000000.  This version of the project (01)
            has the accession number PNSU01000000, and consists of sequences
            PNSU01000001-PNSU01000206.
            Bacteria available from Sharon Tennant, University of Maryland,
            Center for Vaccine Development.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 345x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="621178"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /geo_loc_name="Bangladesh"
                     /lat_lon="23.6850 N 90.3563 E"
                     /collection_date="27-Aug-2012"
                     /collected_by="Global Enteric Multicenter Study (GEMS)"
WGS         PNSU01000001-PNSU01000206
//
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