LOCUS PNSU01000000 206 rc DNA linear BCT 14-MAY-2020
DEFINITION Escherichia coli strain 621178, whole genome shotgun sequencing
project.
ACCESSION PNSU00000000
VERSION PNSU00000000.1
DBLINK BioProject: PRJNA421191
BioSample: SAMN08161215
KEYWORDS WGS.
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 206)
AUTHORS Hazen,T.H., Nagaraj,S., Sen,S., Permala-Booth,J., Del Canto,F.,
Vidal,R., Barry,E.M., Bitoun,J.P., Chen,W.H., Tennant,S.M. and
Rasko,D.A.
TITLE Genome and Functional Characterization of Colonization Factor
Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only
Enterotoxigenic Escherichia coli Reveals Lineage and Geographic
Variation
JOURNAL mSystems 4 (1), e00329-18 (2019)
PUBMED 30944874
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 206)
AUTHORS Hazen,T.H. and Rasko,D.A.
TITLE Direct Submission
JOURNAL Submitted (05-JAN-2018) Institute for Genome Sciences, University
of Maryland, School of Medicine, 801 W. Baltimore St., Baltimore,
MD 21201, USA
COMMENT The Escherichia coli whole genome shotgun (WGS) project has the
project accession PNSU00000000. This version of the project (01)
has the accession number PNSU01000000, and consists of sequences
PNSU01000001-PNSU01000206.
Bacteria available from Sharon Tennant, University of Maryland,
Center for Vaccine Development.
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.10.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 345x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..206
/organism="Escherichia coli"
/mol_type="genomic DNA"
/strain="621178"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:562"
/geo_loc_name="Bangladesh"
/lat_lon="23.6850 N 90.3563 E"
/collection_date="27-Aug-2012"
/collected_by="Global Enteric Multicenter Study (GEMS)"
WGS PNSU01000001-PNSU01000206
//