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Escherichia coli strain 320385, whole genome shotgun sequencing project

GenBank: PNUT00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       PNUT01000000             176 rc    DNA     linear   BCT 14-MAY-2020
DEFINITION  Escherichia coli strain 320385, whole genome shotgun sequencing
            project.
ACCESSION   PNUT00000000
VERSION     PNUT00000000.1
DBLINK      BioProject: PRJNA421191
            BioSample: SAMN08161158
KEYWORDS    WGS.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 176)
  AUTHORS   Hazen,T.H., Nagaraj,S., Sen,S., Permala-Booth,J., Del Canto,F.,
            Vidal,R., Barry,E.M., Bitoun,J.P., Chen,W.H., Tennant,S.M. and
            Rasko,D.A.
  TITLE     Genome and Functional Characterization of Colonization Factor
            Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only
            Enterotoxigenic Escherichia coli Reveals Lineage and Geographic
            Variation
  JOURNAL   mSystems 4 (1), e00329-18 (2019)
   PUBMED   30944874
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 176)
  AUTHORS   Hazen,T.H. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2018) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 801 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     The Escherichia coli whole genome shotgun (WGS) project has the
            project accession PNUT00000000.  This version of the project (01)
            has the accession number PNUT01000000, and consists of sequences
            PNUT01000001-PNUT01000176.
            Bacteria available from Sharon Tennant, University of Maryland,
            Center for Vaccine Development.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 372x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..176
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="320385"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /geo_loc_name="Mozambique"
                     /lat_lon="18.6657 S 35.5296 E"
                     /collection_date="09-Feb-2012"
                     /collected_by="Global Enteric Multicenter Study (GEMS)"
WGS         PNUT01000001-PNUT01000176
//
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