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Klebsiella pneumoniae strain OctC4_3_2, whole genome shotgun sequencing project

GenBank: PPYM00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       PPYM01000000             133 rc    DNA     linear   BCT 31-JAN-2018
DEFINITION  Klebsiella pneumoniae strain OctC4_3_2, whole genome shotgun
            sequencing project.
ACCESSION   PPYM00000000
VERSION     PPYM00000000.1
DBLINK      BioProject: PRJNA415530
            BioSample: SAMN08364486
KEYWORDS    WGS.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella.
REFERENCE   1  (bases 1 to 133)
  AUTHORS   Pitt,M.E., Cao,M.D., Butler,M.S., Ramu,S., Ganesamoorthy,D.,
            Blaskovich,M.A.T., Coin,L.J.M. and Cooper,M.A.
  TITLE     Octapeptin C4 Induces Less Resistance and Novel Mutations in
            Extensively Drug-Resistant Klebsiella pneumoniae Compared to
            Polymyxins
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 133)
  AUTHORS   Pitt,M.E., Cao,M.D., Butler,M.S., Ramu,S., Ganesamoorthy,D.,
            Blaskovich,M.A.T., Coin,L.J.M. and Cooper,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2018) Institute for Molecular Bioscience, The
            University of Queensland, Carmody Road, Brisbane, Queensland 4067,
            Australia
COMMENT     The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession PPYM00000000.  This version of the project
            (01) has the accession number PPYM01000000, and consists of
            sequences PPYM01000001-PPYM01000133.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 112x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/26/2018 14:44:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,817
            CDS (total)                       :: 5,718
            Genes (coding)                    :: 5,551
            CDS (coding)                      :: 5,551
            Genes (RNA)                       :: 99
            rRNAs                             :: 8, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 6 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 72 of 167
            Pseudo Genes (incomplete)         :: 89 of 167
            Pseudo Genes (internal stop)      :: 40 of 167
            Pseudo Genes (multiple problems)  :: 32 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="OctC4_3_2"
                     /isolation_source="laboratory culture after 20 days
                     induced resistance against Octapeptin C4"
                     /db_xref="taxon:573"
                     /geo_loc_name="Australia: Queensland"
                     /collection_date="08-Mar-2015"
WGS         PPYM01000001-PPYM01000133
//
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