LOCUS PPYM01000000 133 rc DNA linear BCT 31-JAN-2018
DEFINITION Klebsiella pneumoniae strain OctC4_3_2, whole genome shotgun
sequencing project.
ACCESSION PPYM00000000
VERSION PPYM00000000.1
DBLINK BioProject: PRJNA415530
BioSample: SAMN08364486
KEYWORDS WGS.
SOURCE Klebsiella pneumoniae
ORGANISM Klebsiella pneumoniae
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
Klebsiella.
REFERENCE 1 (bases 1 to 133)
AUTHORS Pitt,M.E., Cao,M.D., Butler,M.S., Ramu,S., Ganesamoorthy,D.,
Blaskovich,M.A.T., Coin,L.J.M. and Cooper,M.A.
TITLE Octapeptin C4 Induces Less Resistance and Novel Mutations in
Extensively Drug-Resistant Klebsiella pneumoniae Compared to
Polymyxins
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 133)
AUTHORS Pitt,M.E., Cao,M.D., Butler,M.S., Ramu,S., Ganesamoorthy,D.,
Blaskovich,M.A.T., Coin,L.J.M. and Cooper,M.A.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2018) Institute for Molecular Bioscience, The
University of Queensland, Carmody Road, Brisbane, Queensland 4067,
Australia
COMMENT The Klebsiella pneumoniae whole genome shotgun (WGS) project has
the project accession PPYM00000000. This version of the project
(01) has the accession number PPYM01000000, and consists of
sequences PPYM01000001-PPYM01000133.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 2017
Assembly Method :: SPAdes v. 3.10.1
Genome Representation :: Full
Expected Final Version :: No
Genome Coverage :: 112x
Sequencing Technology :: Illumina NextSeq 500
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 01/26/2018 14:44:57
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,817
CDS (total) :: 5,718
Genes (coding) :: 5,551
CDS (coding) :: 5,551
Genes (RNA) :: 99
rRNAs :: 8, 4, 6 (5S, 16S, 23S)
complete rRNAs :: 7, 1 (5S, 16S)
partial rRNAs :: 1, 3, 6 (5S, 16S, 23S)
tRNAs :: 71
ncRNAs :: 10
Pseudo Genes (total) :: 167
Pseudo Genes (ambiguous residues) :: 0 of 167
Pseudo Genes (frameshifted) :: 72 of 167
Pseudo Genes (incomplete) :: 89 of 167
Pseudo Genes (internal stop) :: 40 of 167
Pseudo Genes (multiple problems) :: 32 of 167
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..133
/organism="Klebsiella pneumoniae"
/mol_type="genomic DNA"
/strain="OctC4_3_2"
/isolation_source="laboratory culture after 20 days
induced resistance against Octapeptin C4"
/db_xref="taxon:573"
/geo_loc_name="Australia: Queensland"
/collection_date="08-Mar-2015"
WGS PPYM01000001-PPYM01000133
//