LOCUS RHWB01000000 187 rc DNA linear BCT 12-DEC-2018
DEFINITION Enterococcus faecium strain EF_086, whole genome shotgun sequencing
project.
ACCESSION RHWB00000000
VERSION RHWB00000000.1
DBLINK BioProject: PRJNA497126
BioSample: SAMN10249053
KEYWORDS WGS.
SOURCE Enterococcus faecium
ORGANISM Enterococcus faecium
Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
Enterococcaceae; Enterococcus.
REFERENCE 1 (bases 1 to 187)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Transmission dynamics of multidrug resistant bacteria on intensive
care unit surfaces
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 187)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2018) Computational and Systems Biology,
Washington University in St. Louis School of Medicine, 660 South
Euclid Avenue, St. Louis, MO 63110, USA
COMMENT The Enterococcus faecium whole genome shotgun (WGS) project has the
project accession RHWB00000000. This version of the project (01)
has the accession number RHWB01000000, and consists of sequences
RHWB01000001-RHWB01000187.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 60x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/13/2018 14:16:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,171
CDS (total) :: 3,118
Genes (coding) :: 2,956
CDS (coding) :: 2,956
Genes (RNA) :: 53
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 46
ncRNAs :: 4
Pseudo Genes (total) :: 162
Pseudo Genes (ambiguous residues) :: 2 of 162
Pseudo Genes (frameshifted) :: 50 of 162
Pseudo Genes (incomplete) :: 86 of 162
Pseudo Genes (internal stop) :: 49 of 162
Pseudo Genes (multiple problems) :: 24 of 162
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..187
/organism="Enterococcus faecium"
/mol_type="genomic DNA"
/strain="EF_086"
/isolation_source="bedside rail in hospital intensive care
unit"
/db_xref="taxon:1352"
/geo_loc_name="Pakistan"
/collection_date="2016-01"
WGS RHWB01000001-RHWB01000187
//