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Enterococcus faecium strain EF_086, whole genome shotgun sequencing project

GenBank: RHWB00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       RHWB01000000             187 rc    DNA     linear   BCT 12-DEC-2018
DEFINITION  Enterococcus faecium strain EF_086, whole genome shotgun sequencing
            project.
ACCESSION   RHWB00000000
VERSION     RHWB00000000.1
DBLINK      BioProject: PRJNA497126
            BioSample: SAMN10249053
KEYWORDS    WGS.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 187)
  AUTHORS   D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
            Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
  TITLE     Transmission dynamics of multidrug resistant bacteria on intensive
            care unit surfaces
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 187)
  AUTHORS   D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
            Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2018) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 South
            Euclid Avenue, St. Louis, MO 63110, USA
COMMENT     The Enterococcus faecium whole genome shotgun (WGS) project has the
            project accession RHWB00000000.  This version of the project (01)
            has the accession number RHWB01000000, and consists of sequences
            RHWB01000001-RHWB01000187.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/13/2018 14:16:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,171
            CDS (total)                       :: 3,118
            Genes (coding)                    :: 2,956
            CDS (coding)                      :: 2,956
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            Pseudo Genes (ambiguous residues) :: 2 of 162
            Pseudo Genes (frameshifted)       :: 50 of 162
            Pseudo Genes (incomplete)         :: 86 of 162
            Pseudo Genes (internal stop)      :: 49 of 162
            Pseudo Genes (multiple problems)  :: 24 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..187
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="EF_086"
                     /isolation_source="bedside rail in hospital intensive care
                     unit"
                     /db_xref="taxon:1352"
                     /geo_loc_name="Pakistan"
                     /collection_date="2016-01"
WGS         RHWB01000001-RHWB01000187
//
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