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Klebsiella aerogenes strain URMC201, whole genome shotgun sequencing project

GenBank: RPEK00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       RPEK01000000              65 rc    DNA     linear   BCT 17-DEC-2018
DEFINITION  Klebsiella aerogenes strain URMC201, whole genome shotgun
            sequencing project.
ACCESSION   RPEK00000000
VERSION     RPEK00000000.1
DBLINK      BioProject: PRJNA504784
            BioSample: SAMN10405414
KEYWORDS    WGS.
SOURCE      Klebsiella aerogenes
  ORGANISM  Klebsiella aerogenes
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella.
REFERENCE   1  (bases 1 to 65)
  AUTHORS   Shin,S.H. and Yang,K.-S.
  TITLE     Complete genome sequence of Enterobacter aerogenes KCTC 2190
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 65)
  AUTHORS   Malek,A. and Pecora,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2018) Pathology, University of Rochester, 601
            Elmwood Ave, Rochester, NY 14642, USA
COMMENT     The Klebsiella aerogenes whole genome shotgun (WGS) project has the
            project accession RPEK00000000.  This version of the project (01)
            has the accession number RPEK01000000, and consists of sequences
            RPEK01000001-RPEK01000065.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92.2756446069x
            Sequencing Technology  :: Illumina Nextera XT sequencing
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/16/2018 18:14:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,231
            CDS (total)                       :: 5,100
            Genes (coding)                    :: 4,970
            CDS (coding)                      :: 4,970
            Genes (RNA)                       :: 131
            rRNAs                             :: 9, 10, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 4, 10, 15 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 60 of 130
            Pseudo Genes (incomplete)         :: 59 of 130
            Pseudo Genes (internal stop)      :: 39 of 130
            Pseudo Genes (multiple problems)  :: 26 of 130
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..65
                     /organism="Klebsiella aerogenes"
                     /mol_type="genomic DNA"
                     /strain="URMC201"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:548"
                     /geo_loc_name="USA: Rochester, NY"
                     /lat_lon="43.1566 N 77.6088 W"
                     /collection_date="2015"
                     /collected_by="Adel Malek"
WGS         RPEK01000001-RPEK01000065
//
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