LOCUS RPML01000000 328 rc DNA linear BCT 08-JAN-2019
DEFINITION Sinorhizobium meliloti strain USDA1202, whole genome shotgun
sequencing project.
ACCESSION RPML00000000
VERSION RPML00000000.1
DBLINK BioProject: PRJNA401434
BioSample: SAMN07640784
KEYWORDS WGS.
SOURCE Sinorhizobium meliloti (Rhizobium meliloti)
ORGANISM Sinorhizobium meliloti
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
Sinorhizobium.
REFERENCE 1 (bases 1 to 328)
AUTHORS Epstein,B., Abou-Shanab,R.A.I., Shamseldin,A., Taylor,M.R.,
Guhlin,J., Burghardt,L.T., Nelson,M., Sadowsky,M.J. and Tiffin,P.
TITLE Genome-Wide Association Analyses in the Model Rhizobium Ensifer
meliloti
JOURNAL mSphere 3 (5), e00386-18 (2018)
PUBMED 30355664
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 328)
AUTHORS Epstein,B., Guhlin,J., Nelson,M., Burghardt,L.T., Sadowsky,M.J. and
Tiffin,P.
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2018) Plant and Microbial Biology, University of
Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St. Paul, MN 55108,
USA
COMMENT The Sinorhizobium meliloti whole genome shotgun (WGS) project has
the project accession RPML00000000. This version of the project
(01) has the accession number RPML01000000, and consists of
sequences RPML01000001-RPML01000328.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.13.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 8.29662582503398x
Sequencing Technology :: Illumina Miseq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/22/2018 03:17:21
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 7,602
CDSs (total) :: 7,544
Genes (coding) :: 6,944
CDSs (with protein) :: 6,944
Genes (RNA) :: 58
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 51
ncRNAs :: 4
Pseudo Genes (total) :: 600
CDSs (without protein) :: 600
Pseudo Genes (ambiguous residues) :: 0 of 600
Pseudo Genes (frameshifted) :: 359 of 600
Pseudo Genes (incomplete) :: 335 of 600
Pseudo Genes (internal stop) :: 69 of 600
Pseudo Genes (multiple problems) :: 151 of 600
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..328
/organism="Sinorhizobium meliloti"
/mol_type="genomic DNA"
/strain="USDA1202"
/isolation_source="root nodule"
/host="Medicago sativa"
/db_xref="taxon:382"
/geo_loc_name="USA: Roseau, Minnesota"
/lat_lon="48.84608 N 95.762247 W"
WGS RPML01000001-RPML01000328
//