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Sinorhizobium meliloti strain USDA1202, whole genome shotgun sequencing project

GenBank: RPML00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       RPML01000000             328 rc    DNA     linear   BCT 08-JAN-2019
DEFINITION  Sinorhizobium meliloti strain USDA1202, whole genome shotgun
            sequencing project.
ACCESSION   RPML00000000
VERSION     RPML00000000.1
DBLINK      BioProject: PRJNA401434
            BioSample: SAMN07640784
KEYWORDS    WGS.
SOURCE      Sinorhizobium meliloti (Rhizobium meliloti)
  ORGANISM  Sinorhizobium meliloti
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Epstein,B., Abou-Shanab,R.A.I., Shamseldin,A., Taylor,M.R.,
            Guhlin,J., Burghardt,L.T., Nelson,M., Sadowsky,M.J. and Tiffin,P.
  TITLE     Genome-Wide Association Analyses in the Model Rhizobium Ensifer
            meliloti
  JOURNAL   mSphere 3 (5), e00386-18 (2018)
   PUBMED   30355664
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 328)
  AUTHORS   Epstein,B., Guhlin,J., Nelson,M., Burghardt,L.T., Sadowsky,M.J. and
            Tiffin,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2018) Plant and Microbial Biology, University of
            Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St. Paul, MN 55108,
            USA
COMMENT     The Sinorhizobium meliloti whole genome shotgun (WGS) project has
            the project accession RPML00000000.  This version of the project
            (01) has the accession number RPML01000000, and consists of
            sequences RPML01000001-RPML01000328.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.29662582503398x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/22/2018 03:17:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 7,602
            CDSs (total)                      :: 7,544
            Genes (coding)                    :: 6,944
            CDSs (with protein)               :: 6,944
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 600
            CDSs (without protein)            :: 600
            Pseudo Genes (ambiguous residues) :: 0 of 600
            Pseudo Genes (frameshifted)       :: 359 of 600
            Pseudo Genes (incomplete)         :: 335 of 600
            Pseudo Genes (internal stop)      :: 69 of 600
            Pseudo Genes (multiple problems)  :: 151 of 600
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Sinorhizobium meliloti"
                     /mol_type="genomic DNA"
                     /strain="USDA1202"
                     /isolation_source="root nodule"
                     /host="Medicago sativa"
                     /db_xref="taxon:382"
                     /geo_loc_name="USA: Roseau, Minnesota"
                     /lat_lon="48.84608 N 95.762247 W"
WGS         RPML01000001-RPML01000328
//
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