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Serratia marcescens strain ICR003202, whole genome shotgun sequencing project

GenBank: SEJO00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       SEJO01000000              78 rc    DNA     linear   BCT 12-FEB-2019
DEFINITION  Serratia marcescens strain ICR003202, whole genome shotgun
            sequencing project.
ACCESSION   SEJO00000000
VERSION     SEJO00000000.1
DBLINK      BioProject: PRJNA517917
            BioSample: SAMN10847460
KEYWORDS    WGS.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 78)
  AUTHORS   Cuzon,G., Dabos,L., Bernabeu,S., Lemaitre,N., Leyer,C.,
            Couve-Deacon,E., Vidal,P., Monpierre,L., Le Guillou,E.,
            Echaabi,A.K., Chainier,D., Ploy,M.-C., Cattoir,V., Gaillot,O.,
            Fortineau,N. and Naas,T.
  TITLE     Undetected carbapenem-resistant Enterobacteriaceae in urine
            specimens: results of the French infection-Carbapenem Resistance
            Evaluation Surveillance Trial (iCREST-F)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 78)
  AUTHORS   Dabos,L. and Naas,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2019) Hopital Bicetre, Bacteriology, EA7361,
            Universite Paris Sud, 78, rue general Leclerc, le Kremlin-Bicetre,
            Val-de-Marne 94275, France
COMMENT     The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession SEJO00000000.  This version of the project (01)
            has the accession number SEJO01000000, and consists of sequences
            SEJO01000001-SEJO01000078.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/01/2019 18:39:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,873
            CDSs (total)                      :: 4,806
            Genes (coding)                    :: 4,739
            CDSs (with protein)               :: 4,739
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 14 of 67
            Pseudo Genes (frameshifted)       :: 28 of 67
            Pseudo Genes (incomplete)         :: 31 of 67
            Pseudo Genes (internal stop)      :: 13 of 67
            Pseudo Genes (multiple problems)  :: 18 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..78
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="ICR003202"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="France"
                     /lat_lon="46.22 N 2.21 E"
                     /collection_date="2016"
                     /collected_by="CHU-Bicetre"
WGS         SEJO01000001-SEJO01000078
//
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