LOCUS SEJO01000000 78 rc DNA linear BCT 12-FEB-2019
DEFINITION Serratia marcescens strain ICR003202, whole genome shotgun
sequencing project.
ACCESSION SEJO00000000
VERSION SEJO00000000.1
DBLINK BioProject: PRJNA517917
BioSample: SAMN10847460
KEYWORDS WGS.
SOURCE Serratia marcescens
ORGANISM Serratia marcescens
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Yersiniaceae; Serratia.
REFERENCE 1 (bases 1 to 78)
AUTHORS Cuzon,G., Dabos,L., Bernabeu,S., Lemaitre,N., Leyer,C.,
Couve-Deacon,E., Vidal,P., Monpierre,L., Le Guillou,E.,
Echaabi,A.K., Chainier,D., Ploy,M.-C., Cattoir,V., Gaillot,O.,
Fortineau,N. and Naas,T.
TITLE Undetected carbapenem-resistant Enterobacteriaceae in urine
specimens: results of the French infection-Carbapenem Resistance
Evaluation Surveillance Trial (iCREST-F)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 78)
AUTHORS Dabos,L. and Naas,T.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2019) Hopital Bicetre, Bacteriology, EA7361,
Universite Paris Sud, 78, rue general Leclerc, le Kremlin-Bicetre,
Val-de-Marne 94275, France
COMMENT The Serratia marcescens whole genome shotgun (WGS) project has the
project accession SEJO00000000. This version of the project (01)
has the accession number SEJO01000000, and consists of sequences
SEJO01000001-SEJO01000078.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: CLC NGS Cell v. 9.5
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 75x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 02/01/2019 18:39:03
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,873
CDSs (total) :: 4,806
Genes (coding) :: 4,739
CDSs (with protein) :: 4,739
Genes (RNA) :: 67
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1 (16S, 23S)
partial rRNAs :: 1 (5S)
tRNAs :: 53
ncRNAs :: 11
Pseudo Genes (total) :: 67
CDSs (without protein) :: 67
Pseudo Genes (ambiguous residues) :: 14 of 67
Pseudo Genes (frameshifted) :: 28 of 67
Pseudo Genes (incomplete) :: 31 of 67
Pseudo Genes (internal stop) :: 13 of 67
Pseudo Genes (multiple problems) :: 18 of 67
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..78
/organism="Serratia marcescens"
/mol_type="genomic DNA"
/strain="ICR003202"
/isolation_source="patient"
/host="Homo sapiens"
/db_xref="taxon:615"
/geo_loc_name="France"
/lat_lon="46.22 N 2.21 E"
/collection_date="2016"
/collected_by="CHU-Bicetre"
WGS SEJO01000001-SEJO01000078
//