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Vibrio mimicus strain N2810, whole genome shotgun sequencing project

GenBank: VSIF00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       VSIF01000000              59 rc    DNA     linear   BCT 24-AUG-2019
DEFINITION  Vibrio mimicus strain N2810, whole genome shotgun sequencing
            project.
ACCESSION   VSIF00000000
VERSION     VSIF00000000.1
DBLINK      BioProject: PRJNA548872
            BioSample: SAMN12057869
KEYWORDS    WGS.
SOURCE      Vibrio mimicus
  ORGANISM  Vibrio mimicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 59)
  AUTHORS   Zhiqiu,Y., Bin,L. and Lingyan,J.
  TITLE     Vibrio cholerae phylogeny based on whole-genome sequencing reveals
            genetic diversity and population strucutre
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 59)
  AUTHORS   Zhiqiu,Y., Bin,L. and Lingyan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2019) Teda College, Nankai University, Hongdajie
            23, Tianjin 300000, China
COMMENT     The Vibrio mimicus whole genome shotgun (WGS) project has the
            project accession VSIF00000000.  This version of the project (01)
            has the accession number VSIF01000000, and consists of sequences
            VSIF01000001-VSIF01000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/20/2019 00:37:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,114
            CDSs (total)                      :: 4,037
            Genes (coding)                    :: 3,915
            CDSs (with protein)               :: 3,915
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 8 of 122
            Pseudo Genes (frameshifted)       :: 55 of 122
            Pseudo Genes (incomplete)         :: 44 of 122
            Pseudo Genes (internal stop)      :: 36 of 122
            Pseudo Genes (multiple problems)  :: 19 of 122
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Vibrio mimicus"
                     /mol_type="genomic DNA"
                     /strain="N2810"
                     /db_xref="taxon:674"
WGS         VSIF01000001-VSIF01000059
//
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