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MAG: Erysipelotrichales bacterium isolate Lab288P1bin79, whole genome shotgun sequencing project

GenBank: WRBM00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       WRBM01000000              83 rc    DNA     linear   ENV 12-MAY-2022
DEFINITION  MAG: Erysipelotrichales bacterium isolate Lab288P1bin79, whole
            genome shotgun sequencing project.
ACCESSION   WRBM00000000
VERSION     WRBM00000000.1
DBLINK      BioProject: PRJNA560329
            BioSample: SAMN12581879
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Erysipelotrichales bacterium (termite gut metagenome)
  ORGANISM  Erysipelotrichales bacterium
            Bacteria; Bacillati; Bacillota; Erysipelotrichia;
            Erysipelotrichales.
REFERENCE   1  (bases 1 to 83)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 83)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     The Erysipelotrichales bacterium whole genome shotgun (WGS) project
            has the project accession WRBM00000000.  This version of the
            project (01) has the accession number WRBM01000000, and consists of
            sequences WRBM01000001-WRBM01000083.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/09/2022 14:34:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,793
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,751
            CDSs (with protein)               :: 1,751
            Genes (RNA)                       :: 26
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 21
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 1 of 16
            Pseudo Genes (incomplete)         :: 16 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            Pseudo Genes (multiple problems)  :: 2 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..83
                     /organism="Erysipelotrichales bacterium"
                     /mol_type="genomic DNA"
                     /isolate="Lab288P1bin79"
                     /isolation_source="P1 gut compartment"
                     /host="Labiotermes labralis"
                     /db_xref="taxon:2478483"
                     /environmental_sample
                     /geo_loc_name="French Guiana: Petit-Saut"
                     /lat_lon="5.3454 N 53.2462 W"
                     /collection_date="2016-01-31"
                     /metagenome_source="termite gut metagenome"
                     /note="metagenomic"
WGS         WRBM01000001-WRBM01000083
//
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