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MAG: Candidatus Fibrimonadales bacterium isolate Th196P3bin8, whole genome shotgun sequencing project

GenBank: WRMM00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       WRMM01000000             360 rc    DNA     linear   ENV 12-MAY-2022
DEFINITION  MAG: Candidatus Fibrimonadales bacterium isolate Th196P3bin8, whole
            genome shotgun sequencing project.
ACCESSION   WRMM00000000
VERSION     WRMM00000000.1
DBLINK      BioProject: PRJNA560329
            BioSample: SAMN12582165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Candidatus Fibrimonadales bacterium (termite gut metagenome)
  ORGANISM  Candidatus Fibrimonadales bacterium
            Bacteria; Pseudomonadati; Fibrobacterota; Fibrobacteria; Candidatus
            Fibrimonadales.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     The Candidatus Fibrimonadales bacterium whole genome shotgun (WGS)
            project has the project accession WRMM00000000.  This version of
            the project (01) has the accession number WRMM01000000, and
            consists of sequences WRMM01000001-WRMM01000360.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.95x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/09/2022 11:10:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,335
            Genes (coding)                    :: 2,323
            CDSs (with protein)               :: 2,323
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Candidatus Fibrimonadales bacterium"
                     /mol_type="genomic DNA"
                     /isolate="Th196P3bin8"
                     /isolation_source="P3 gut compartment"
                     /host="Termes hospes"
                     /db_xref="taxon:2604144"
                     /environmental_sample
                     /geo_loc_name="Republic of the Congo: Pointe-Noire"
                     /lat_lon="4.42 S 11.4949 E"
                     /collection_date="2013-08-12"
                     /metagenome_source="termite gut metagenome"
                     /note="metagenomic"
WGS         WRMM01000001-WRMM01000360
//
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