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NCBI Reference Sequence: XM_006255770.5
FASTA Graphics
LOCUS XM_006255770 7942 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus CBFA2/RUNX1 partner transcriptional co-repressor 3 (Cbfa2t3), transcript variant X1, mRNA. ACCESSION XM_006255770 VERSION XM_006255770.5 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086037) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_006255770.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7942 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="19" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..7942 /gene="Cbfa2t3" /note="CBFA2/RUNX1 partner transcriptional co-repressor 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 192 long SRA reads, 19 Proteins" /db_xref="GeneID:361431" /db_xref="RGD:1310547" CDS 488..2269 /gene="Cbfa2t3" /codon_start=1 /product="protein CBFA2T3 isoform X1" /protein_id="XP_006255832.1" /db_xref="GeneID:361431" /db_xref="RGD:1310547" /translation="MSQASTTLESGALLPGPRGLHNGSPAHRKEKAAAMPDSPAEVKT QPRSTPPSMPPPPPTSSQGATRPPSFTPHTLMNGSSHSPTAIHGAPSTPNGFSNGPAT SSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLT IEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQTPAQYLAQHEQLLL DASATSPVDSSELLLEVNENGKRKTPDRTKENGSDRDPLHPDHLSKRSCTLSPAQRCS PSNGLPHPTPPPPPHYRLEDMAMAHHFRDSYRHPDPRELRERHRPLAIPGSRQEEVID HRLTEREWAEEWKHLNSLLNCIMDMAEKTRRSLTVLRRCQEADREELNHWIRCYSDSE EGKKGPTPISARSLNSCSGSEGSQLDVHRDFTPRTLSGYMPEEIWRKAEEAVNEVKRQ AMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWN CGRKASETCSGCNAARYCGSFCQHKDWEKHHHVCGQSLQGPAAAVADPLPGQPDATAS PSEAGSAGPSRPCSPGPPVPLDTAVPR" polyA_site 7942 /gene="Cbfa2t3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agactgggcc cagtgggagg tctcagggct acaggcagga ttaggaggaa gttgttggaa 61 agtcagaccg gaatggcatg gcggagggag aaccggcaac cgggcagatg gttcctgcgg 121 aggaagcatt gggcacagct gcaggccccc ccgaccccca ccgcattatc acggcgacac 181 agctggctgc ctcacccctg aaggctgcag gaggacctcc cccatgctgt ccccaagccc 241 gccccatgtc acatgaggcc ctgaagcctc ccacccgctg tccagggcca caacccagtt 301 ctgctggctg cagtgactag aagggcctgg agcctctgag gaacagaggc acaggccccc 361 acacgactcc tcctgttctt tccagacccc gagaaatcag aaaaggtact tcagggtggg 421 ctctggaggc cggccatctc actccagctg caggcaccca tcagtctcct gcttcctcgg 481 aggctccatg tcccaggcat ctaccaccct ggagagtggg gcactcctgc caggaccccg 541 gggtcttcac aatggaagtc cagctcacag gaaggagaag gctgcagcaa tgccagactc 601 cccggctgaa gtgaagacgc agccccggtc cacacccccc agcatgccgc cccctcctcc 661 cacctcatcc cagggagcca cacgaccacc ctccttcaca cctcacacac tgatgaacgg 721 cagcagccac tcacccacgg ccatccacgg tgccccgtct acgcccaatg gcttcagcaa 781 cggcccagcc acctcatcca cagcctcgct gtccacacag cacctgcccc cggcctgcgg 841 ggcgcggcag ctcagcaaac tcaagcggtt cctcaccacc ctgcagcagt ttggcagcga 901 catctcgccc gagatcgggg agcgcgtgcg cacactggtg ctgggactgg tgaactcaac 961 tctgacgatc gaagagtttc attccaagct ccaagaagcc accaactttc cactgaggcc 1021 gttcgtcatc ccctttctga aggctaatct tccgctgctg cagcgagagc tcctgcactg 1081 cgcccgcctg gccaagcaga cgcctgccca gtacctggcc cagcacgaac agctgctgct 1141 ggatgccagc gccacctccc cggtggactc gtctgagctc ctgctggaag tcaacgagaa 1201 cggcaagagg aaaacacctg acaggaccaa agagaatggg tcagaccggg accctctgca 1261 ccccgaccac ctcagtaagc ggtcctgcac cctgagccct gcccagcgct gcagccccag 1321 caatgggctg ccccacccta caccgccccc gcccccgcac tatcgcctgg aggacatggc 1381 catggcccac cacttccggg actcctaccg acatcctgat ccccgagagc tacgggaacg 1441 ccatcggccc ctcgccatac ctgggtctcg acaagaagaa gtgattgacc accggctcac 1501 ggaacgtgag tgggcagaag agtggaagca tctcaatagt ctcctgaact gtatcatgga 1561 catggcggag aagacgcgga gatccctcac cgtgctgcgc cggtgtcagg aggccgaccg 1621 cgaggaactc aaccactgga tccggtgcta cagtgactct gaggagggga agaagggccc 1681 cactcccatc tccgcccggt ccctcaacag ctgcagtggc tctgaggggt ctcagctaga 1741 tgttcaccgg gacttcaccc ccaggaccct gtctggctat atgcctgaag agatctggag 1801 gaaggctgaa gaagctgtga atgaggtgaa gcgtcaggcg atgtcggaac tacagaaagc 1861 cgtgtctgat gcggaacgca aagcccacga actcatcacc acagagcgtg ccaagatgga 1921 gcgagccctg gctgaggcca agcgacaggc ctcggaggat gccctgactg tcatcaacca 1981 gcaggaggac tccagcgaga gctgctggaa ctgcgggcgc aaggccagtg agacttgcag 2041 tggctgtaac gccgcacgct actgcgggtc cttctgtcag cacaaggact gggagaaaca 2101 ccaccatgtg tgtggccaga gtctgcaggg ccctgcagct gcggtggctg acccattacc 2161 tggacagcct gacgccactg ccagccccag cgaagccggc tcagcaggac cctctcgtcc 2221 ctgctctccg ggcccaccag tcccactgga cactgctgtg ccccgctgac ctccagatct 2281 gccactcagc ccctggacgc cctgccctgc caacccaacc ccggccccac cgtggtccac 2341 cagttgcctg gagctggcct tgtggagtca ctgctgctac tgcttctctc caaaataaaa 2401 cacagatcca acagaactgc acccatgcag ccccagctac ctgacaaggt ccaccaggac 2461 ctctacagtc tctcttcgca agcaccctca gaaaccacca cggagctgca gacatcggcg 2521 tcagcggaag tgtggccagc tgtctgcccc ctctgtgtct gtctgtgacc gtctctcttt 2581 ctgcgtctgc ctctcttctg cgtgtctgga tgtcttcgtc tccttctgcc tccctgactc 2641 tcccgtgtct ccgtctctgt gaagtccacg tgggtttctc tgtcagcaga gaaaccccag 2701 ttggtagctt tggttttcca tgaagaactt ttggagactt tgttttgttt tgctggcaga 2761 caagctactt agaaacggac agagaagact ggggggggct tctcccccat ccctcctcgg 2821 taagggaaga aactgtgatt tttttttttc tagccggtgt tgctctatct cccagccagc 2881 cccggggggg atcggcgcgc acacagaaga gatgccgaga aacatttcag tttccaactc 2941 aagaagcagt ttttgtttca ggttttattt cttttcttta acgtcaaact ctttggcttt 3001 aagtgaagaa gaaaaaaaga gagagagaga gagagaaaaa atccaaaaag ttgtttgttt 3061 tttttttaag caaaagaaac gtacctataa actaccttac cagctagcca gccaaggatg 3121 ccagacacac ctcgctccaa aggaaaccca aaaaaaaaaa agcaaactca aaaaaatcaa 3181 aatccaaaat ttatttttat cactgccaaa gtattttttt catggtctct ccaccctggg 3241 ttggtttgga tgtcagtctt tgattttggt tttgattttg tcaaggggag gggggcgggt 3301 gtcgggatac tgggatttgg tgggttgggc caagaagaaa cctttcgttc ctttttgacc 3361 ggtgggcagc atcctggctg ggcaatgtgg tcggcagcga ggccctatgg ccctcagcac 3421 cacatccaga agccccagtc agcatgagcc tgagcattgt gtgcccaagg gccacgcccg 3481 tgcgtcccta cacgcaaggg tgacatctcc atctgtcccc acaccttcct gggacttctc 3541 ataagtcatt tccacttgtg aaaaaaaaaa gtgctaacgt gttctcccca gagagagcac 3601 acttcctaaa tgaaactgtg acaatctttt gggttgattc ttgactgctt tcgcgagcat 3661 aaggagacgg caaatcatgc tttctcagtt tccctcctct acctctctgc ttttccaccc 3721 caccctacct ccatctcaac cccgtcaccc ccgtccccag tgtcttgcta tggctaccct 3781 catttctttc aaacttttac agaaaaaaaa aaagaaaaag aaaaaaaaaa aaaaaacacc 3841 acaaaaacca gccgccacct cacctagaag actcaagccc acctgtacat agccccaatg 3901 ttggtctcca gtcctagggg tgatggtgtg gctcgcccac ctacactcca gcccttgccc 3961 gccctgccct ccacccgctc gactccctca aggattcaag gaggaaatga aggaagaggg 4021 ctcatgcctg taccaaacaa agagagacag cagacagagt ccgggtctgc gccctctgtg 4081 tggctgcagc aagctgcagg cctagcgtgc aatatggggg actgctcctg aaccctgggc 4141 ccagggggcc ctgcccagag cgaggtgtgc agcgtgtgtt aatgtgaatg taaataggtc 4201 tccacagaag tcccaaccat ggcatcagta ccgaggagat gtttgccaaa taaaaaaaaa 4261 aagaaattga gacaaaccac agacgtgtgt gaaattcagg aaacactttg gaaggaatct 4321 gtggaggagc tgtggtccta ggggcttgtt tgatggctgg ttatctcttc acaactgtgt 4381 aatcgttctc taacagaaca ttctatggaa ggatcctgtt ggccatcatc aacccggtgc 4441 tgtcccggaa tggagcctga cagcaaccct tgctctgaag gccgaggtag atctcattcc 4501 ctggaaggtt cctgaggcca cagctcttca aggccacaga ggtgtgtttt ggtgggtttc 4561 agagaagcca ggacacacgg cggcctccca acttctagtg gacgaccggt cctcctgagc 4621 gtctgccttc gaacactgag tccgtgtgct ggtagagacc tgcctcacgt cacaagaagc 4681 cccactggat tgatttcgtt cccagctgta ccccacgcag ggcttcttgt ctgtgctgcc 4741 ccatagcaca cagcctcctt gacccttcca gaagggcagg ccagtgacca ctggcaagaa 4801 agagttctgg gtggggtggt gggcaccatg tttgtggagg gggaacaacg ttagaccctc 4861 aggtatgctg aggagctgta gtctctagag gtctgggcca ggagtcctga ggtggcgtcc 4921 ctgatgacct aagtccctgg tgtcaggact tcagagtgcc tgctcctatg tggtccagcc 4981 attctgagga aggtcgcaga gggccaccag tttgctttag ttgaaatacc tcctctcctc 5041 atacccacct tttaggaacg agagggctca ccacagacaa caaaatgctg cctagccaga 5101 tttgtctcca tgttccaggc tacatattta gggttcagct gagagcccca tctatatcct 5161 agctgctggg agcgatagcc cctcaaggca gctgtcagat ggcactggac catgtgcatg 5221 agatttggcc agcaattgta aacatcaagg gtgagcgcct agcagtttgc tgggcagagc 5281 tcaggggtca aggcggccac agaatcaggg tggcagggag agagggctgt gaagggttgg 5341 gtgaggaaac caagggctgg aagcagcaga agggagtccc aggtgtgttg atgagttctg 5401 gctggatgtc agcagtgtcg cctgaggcag tgtggcctga ggccaggagg tggagggtaa 5461 agtgaggttg ctacaccagg tcctgaggcc ctggcaaagc tatgggtgct gtgtttagac 5521 tccagctctc caaagacctt acaacaaaac caaacaacct cacagctttg gaaagaacag 5581 gatccatggg cgttcttcac tgggaggtat gccctgggtg gccataacca cagcatgccc 5641 ttggtttcaa ccaccagtct gcctgggggc tctacacaga gctagcaggg aggggcatgg 5701 tactccatcc ctgactcctg ctacctcctc tagttcacaa accatggacc caggaactac 5761 ctgccaggcc tgcttcttgg taacccgagc caaacatgaa ccggctccct ggagatgtgg 5821 ctctcacaga gtcttgctcc cccaaaaccc caaattaaaa ggctactttt cttcctattt 5881 tatggccaaa gctaaaccag gaaggctgag tgaggagggc aggtagcagg cagaactctc 5941 caacccccca aggcccagcc cagatcccgt ctcatgacct tatggcttct tggcacaagt 6001 cctgtctctc ccaccactcc tctcatcaac ttgcccagcc ctgcctcaaa cccagactgg 6061 actttcccca agggctacct aagaggcttc tctccagctc agtcctcaca tttgcacagg 6121 agtggaggtc agtggctctc gtcccacgtg tggtcacagc tgtataggat caggctggat 6181 ggtgccacag ctcaggtccc actgcctgac agggtgccaa ggtgagaaga gctagctccc 6241 acaggagggc ccagaaggaa tcagtcaacg gggacatctg tcagaaaacc tgagagggtc 6301 tctattgaca gagaaggcca agaatgggag gcagggcctt gggcagttga ggacacagtg 6361 gacagggatc aggatgggcc tcaaagttct catttagttc ctccaaataa gcattagact 6421 gacaccaaag tttcatctct ggcatccatt cttctactcc tcagcctaac ctcacggata 6481 gatcaacgct ttcctgagct tgtcctgact gacacagcct ccgcccattc atcttcctcc 6541 gcctgacctt ccagtcaatc acccctgtct gtcaaccttg acccatctgc aaatccatct 6601 tcccacctgt ccattgctcc atccacactg tctctccacc ccaccatccc agcataccat 6661 tcctacatcc aaatgccttc cagccccatg cacacagcca cccccaggtc catcatctct 6721 ctgtccctgt attcagagtt ttatcagctc cctcagtgta ccaaagacac caggtcctcc 6781 catgccctag actctgcttg ccctaaaccg gccagggctg ctccaggaat cccctaccca 6841 tgaggcaaca tcccgcatcc cctaccccag cactctgcct caccatggtg tccagacagc 6901 aggcattgtg gacaggttgg acacgttctt gtggcagctg tgacacatct ggagctgctt 6961 ggggagagaa gggagtgaaa actgtgctgg gagcgggtct gtacatctgc tcacaagctc 7021 tgggaggctg ccttaggcag ccctgttccc tgaaagtagg gcagtccttg tttctaggag 7081 tctgtccaga agagggatct cggaagagga aggcaagcca gggccggcct cccttgggat 7141 aggagtgctg ttagccttgt gccccaggac ccttgtctca tcttctctgt taggatccca 7201 aggagctcag agtcagacgt gtccagcctg cccctaccaa atcagccaat ggtgaggaat 7261 atttgctggg tgtttggggt catccgcatc cccccatacc tcattgcttt tcctgaacct 7321 cctactatgt aggaaagttt ctgaaatgag gctgaggaga gacccctggg ttaccatcat 7381 gctggccaga ggaagagaaa agagggagag aaacctgagg cgagctgggc tcaggggacc 7441 agccgtctct tcctggagac agctcgctga caaagcccag gacagtcaac cagcaacttg 7501 cacaagtccc cacatcctag aaaactctgt cttgttttcc gttccttttc cttcaattca 7561 gttggcccgt agggtaccaa gccagactgg gcgataggaa tgcagcatcg actcaaaagt 7621 atggcctgcc cattacatcc tctaaggctc ctgctcccaa gccagacaag agacccagca 7681 gccctcggcc cacactgtat ctggggtggg cacggcagca cacagcctgc cagggaagcc 7741 actgcttctc cccctacagg agctggggga agagtactgg atgctttgtt cacgaaaagc 7801 tgtgttccac agccctactc atctggtgct gtgtcccacc acccaccgtt atctactgct 7861 gtcctatatg tttgccctgt gggccacgga cacggtgatc aggttaatta catctgtgta 7921 ataaagtgag catttgctat ga //
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