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PREDICTED: Rattus norvegicus CBFA2/RUNX1 partner transcriptional co-repressor 3 (Cbfa2t3), transcript variant X1, mRNA

NCBI Reference Sequence: XM_006255770.5

FASTA Graphics 

LOCUS       XM_006255770            7942 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus CBFA2/RUNX1 partner transcriptional
            co-repressor 3 (Cbfa2t3), transcript variant X1, mRNA.
ACCESSION   XM_006255770
VERSION     XM_006255770.5
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086037) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_006255770.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..7942
                     /gene="Cbfa2t3"
                     /note="CBFA2/RUNX1 partner transcriptional co-repressor 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 192 long SRA reads, 19 Proteins"
                     /db_xref="GeneID:361431"
                     /db_xref="RGD:1310547"
     CDS             488..2269
                     /gene="Cbfa2t3"
                     /codon_start=1
                     /product="protein CBFA2T3 isoform X1"
                     /protein_id="XP_006255832.1"
                     /db_xref="GeneID:361431"
                     /db_xref="RGD:1310547"
                     /translation="MSQASTTLESGALLPGPRGLHNGSPAHRKEKAAAMPDSPAEVKT
                     QPRSTPPSMPPPPPTSSQGATRPPSFTPHTLMNGSSHSPTAIHGAPSTPNGFSNGPAT
                     SSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLT
                     IEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQTPAQYLAQHEQLLL
                     DASATSPVDSSELLLEVNENGKRKTPDRTKENGSDRDPLHPDHLSKRSCTLSPAQRCS
                     PSNGLPHPTPPPPPHYRLEDMAMAHHFRDSYRHPDPRELRERHRPLAIPGSRQEEVID
                     HRLTEREWAEEWKHLNSLLNCIMDMAEKTRRSLTVLRRCQEADREELNHWIRCYSDSE
                     EGKKGPTPISARSLNSCSGSEGSQLDVHRDFTPRTLSGYMPEEIWRKAEEAVNEVKRQ
                     AMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWN
                     CGRKASETCSGCNAARYCGSFCQHKDWEKHHHVCGQSLQGPAAAVADPLPGQPDATAS
                     PSEAGSAGPSRPCSPGPPVPLDTAVPR"
     polyA_site      7942
                     /gene="Cbfa2t3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agactgggcc cagtgggagg tctcagggct acaggcagga ttaggaggaa gttgttggaa
       61 agtcagaccg gaatggcatg gcggagggag aaccggcaac cgggcagatg gttcctgcgg
      121 aggaagcatt gggcacagct gcaggccccc ccgaccccca ccgcattatc acggcgacac
      181 agctggctgc ctcacccctg aaggctgcag gaggacctcc cccatgctgt ccccaagccc
      241 gccccatgtc acatgaggcc ctgaagcctc ccacccgctg tccagggcca caacccagtt
      301 ctgctggctg cagtgactag aagggcctgg agcctctgag gaacagaggc acaggccccc
      361 acacgactcc tcctgttctt tccagacccc gagaaatcag aaaaggtact tcagggtggg
      421 ctctggaggc cggccatctc actccagctg caggcaccca tcagtctcct gcttcctcgg
      481 aggctccatg tcccaggcat ctaccaccct ggagagtggg gcactcctgc caggaccccg
      541 gggtcttcac aatggaagtc cagctcacag gaaggagaag gctgcagcaa tgccagactc
      601 cccggctgaa gtgaagacgc agccccggtc cacacccccc agcatgccgc cccctcctcc
      661 cacctcatcc cagggagcca cacgaccacc ctccttcaca cctcacacac tgatgaacgg
      721 cagcagccac tcacccacgg ccatccacgg tgccccgtct acgcccaatg gcttcagcaa
      781 cggcccagcc acctcatcca cagcctcgct gtccacacag cacctgcccc cggcctgcgg
      841 ggcgcggcag ctcagcaaac tcaagcggtt cctcaccacc ctgcagcagt ttggcagcga
      901 catctcgccc gagatcgggg agcgcgtgcg cacactggtg ctgggactgg tgaactcaac
      961 tctgacgatc gaagagtttc attccaagct ccaagaagcc accaactttc cactgaggcc
     1021 gttcgtcatc ccctttctga aggctaatct tccgctgctg cagcgagagc tcctgcactg
     1081 cgcccgcctg gccaagcaga cgcctgccca gtacctggcc cagcacgaac agctgctgct
     1141 ggatgccagc gccacctccc cggtggactc gtctgagctc ctgctggaag tcaacgagaa
     1201 cggcaagagg aaaacacctg acaggaccaa agagaatggg tcagaccggg accctctgca
     1261 ccccgaccac ctcagtaagc ggtcctgcac cctgagccct gcccagcgct gcagccccag
     1321 caatgggctg ccccacccta caccgccccc gcccccgcac tatcgcctgg aggacatggc
     1381 catggcccac cacttccggg actcctaccg acatcctgat ccccgagagc tacgggaacg
     1441 ccatcggccc ctcgccatac ctgggtctcg acaagaagaa gtgattgacc accggctcac
     1501 ggaacgtgag tgggcagaag agtggaagca tctcaatagt ctcctgaact gtatcatgga
     1561 catggcggag aagacgcgga gatccctcac cgtgctgcgc cggtgtcagg aggccgaccg
     1621 cgaggaactc aaccactgga tccggtgcta cagtgactct gaggagggga agaagggccc
     1681 cactcccatc tccgcccggt ccctcaacag ctgcagtggc tctgaggggt ctcagctaga
     1741 tgttcaccgg gacttcaccc ccaggaccct gtctggctat atgcctgaag agatctggag
     1801 gaaggctgaa gaagctgtga atgaggtgaa gcgtcaggcg atgtcggaac tacagaaagc
     1861 cgtgtctgat gcggaacgca aagcccacga actcatcacc acagagcgtg ccaagatgga
     1921 gcgagccctg gctgaggcca agcgacaggc ctcggaggat gccctgactg tcatcaacca
     1981 gcaggaggac tccagcgaga gctgctggaa ctgcgggcgc aaggccagtg agacttgcag
     2041 tggctgtaac gccgcacgct actgcgggtc cttctgtcag cacaaggact gggagaaaca
     2101 ccaccatgtg tgtggccaga gtctgcaggg ccctgcagct gcggtggctg acccattacc
     2161 tggacagcct gacgccactg ccagccccag cgaagccggc tcagcaggac cctctcgtcc
     2221 ctgctctccg ggcccaccag tcccactgga cactgctgtg ccccgctgac ctccagatct
     2281 gccactcagc ccctggacgc cctgccctgc caacccaacc ccggccccac cgtggtccac
     2341 cagttgcctg gagctggcct tgtggagtca ctgctgctac tgcttctctc caaaataaaa
     2401 cacagatcca acagaactgc acccatgcag ccccagctac ctgacaaggt ccaccaggac
     2461 ctctacagtc tctcttcgca agcaccctca gaaaccacca cggagctgca gacatcggcg
     2521 tcagcggaag tgtggccagc tgtctgcccc ctctgtgtct gtctgtgacc gtctctcttt
     2581 ctgcgtctgc ctctcttctg cgtgtctgga tgtcttcgtc tccttctgcc tccctgactc
     2641 tcccgtgtct ccgtctctgt gaagtccacg tgggtttctc tgtcagcaga gaaaccccag
     2701 ttggtagctt tggttttcca tgaagaactt ttggagactt tgttttgttt tgctggcaga
     2761 caagctactt agaaacggac agagaagact ggggggggct tctcccccat ccctcctcgg
     2821 taagggaaga aactgtgatt tttttttttc tagccggtgt tgctctatct cccagccagc
     2881 cccggggggg atcggcgcgc acacagaaga gatgccgaga aacatttcag tttccaactc
     2941 aagaagcagt ttttgtttca ggttttattt cttttcttta acgtcaaact ctttggcttt
     3001 aagtgaagaa gaaaaaaaga gagagagaga gagagaaaaa atccaaaaag ttgtttgttt
     3061 tttttttaag caaaagaaac gtacctataa actaccttac cagctagcca gccaaggatg
     3121 ccagacacac ctcgctccaa aggaaaccca aaaaaaaaaa agcaaactca aaaaaatcaa
     3181 aatccaaaat ttatttttat cactgccaaa gtattttttt catggtctct ccaccctggg
     3241 ttggtttgga tgtcagtctt tgattttggt tttgattttg tcaaggggag gggggcgggt
     3301 gtcgggatac tgggatttgg tgggttgggc caagaagaaa cctttcgttc ctttttgacc
     3361 ggtgggcagc atcctggctg ggcaatgtgg tcggcagcga ggccctatgg ccctcagcac
     3421 cacatccaga agccccagtc agcatgagcc tgagcattgt gtgcccaagg gccacgcccg
     3481 tgcgtcccta cacgcaaggg tgacatctcc atctgtcccc acaccttcct gggacttctc
     3541 ataagtcatt tccacttgtg aaaaaaaaaa gtgctaacgt gttctcccca gagagagcac
     3601 acttcctaaa tgaaactgtg acaatctttt gggttgattc ttgactgctt tcgcgagcat
     3661 aaggagacgg caaatcatgc tttctcagtt tccctcctct acctctctgc ttttccaccc
     3721 caccctacct ccatctcaac cccgtcaccc ccgtccccag tgtcttgcta tggctaccct
     3781 catttctttc aaacttttac agaaaaaaaa aaagaaaaag aaaaaaaaaa aaaaaacacc
     3841 acaaaaacca gccgccacct cacctagaag actcaagccc acctgtacat agccccaatg
     3901 ttggtctcca gtcctagggg tgatggtgtg gctcgcccac ctacactcca gcccttgccc
     3961 gccctgccct ccacccgctc gactccctca aggattcaag gaggaaatga aggaagaggg
     4021 ctcatgcctg taccaaacaa agagagacag cagacagagt ccgggtctgc gccctctgtg
     4081 tggctgcagc aagctgcagg cctagcgtgc aatatggggg actgctcctg aaccctgggc
     4141 ccagggggcc ctgcccagag cgaggtgtgc agcgtgtgtt aatgtgaatg taaataggtc
     4201 tccacagaag tcccaaccat ggcatcagta ccgaggagat gtttgccaaa taaaaaaaaa
     4261 aagaaattga gacaaaccac agacgtgtgt gaaattcagg aaacactttg gaaggaatct
     4321 gtggaggagc tgtggtccta ggggcttgtt tgatggctgg ttatctcttc acaactgtgt
     4381 aatcgttctc taacagaaca ttctatggaa ggatcctgtt ggccatcatc aacccggtgc
     4441 tgtcccggaa tggagcctga cagcaaccct tgctctgaag gccgaggtag atctcattcc
     4501 ctggaaggtt cctgaggcca cagctcttca aggccacaga ggtgtgtttt ggtgggtttc
     4561 agagaagcca ggacacacgg cggcctccca acttctagtg gacgaccggt cctcctgagc
     4621 gtctgccttc gaacactgag tccgtgtgct ggtagagacc tgcctcacgt cacaagaagc
     4681 cccactggat tgatttcgtt cccagctgta ccccacgcag ggcttcttgt ctgtgctgcc
     4741 ccatagcaca cagcctcctt gacccttcca gaagggcagg ccagtgacca ctggcaagaa
     4801 agagttctgg gtggggtggt gggcaccatg tttgtggagg gggaacaacg ttagaccctc
     4861 aggtatgctg aggagctgta gtctctagag gtctgggcca ggagtcctga ggtggcgtcc
     4921 ctgatgacct aagtccctgg tgtcaggact tcagagtgcc tgctcctatg tggtccagcc
     4981 attctgagga aggtcgcaga gggccaccag tttgctttag ttgaaatacc tcctctcctc
     5041 atacccacct tttaggaacg agagggctca ccacagacaa caaaatgctg cctagccaga
     5101 tttgtctcca tgttccaggc tacatattta gggttcagct gagagcccca tctatatcct
     5161 agctgctggg agcgatagcc cctcaaggca gctgtcagat ggcactggac catgtgcatg
     5221 agatttggcc agcaattgta aacatcaagg gtgagcgcct agcagtttgc tgggcagagc
     5281 tcaggggtca aggcggccac agaatcaggg tggcagggag agagggctgt gaagggttgg
     5341 gtgaggaaac caagggctgg aagcagcaga agggagtccc aggtgtgttg atgagttctg
     5401 gctggatgtc agcagtgtcg cctgaggcag tgtggcctga ggccaggagg tggagggtaa
     5461 agtgaggttg ctacaccagg tcctgaggcc ctggcaaagc tatgggtgct gtgtttagac
     5521 tccagctctc caaagacctt acaacaaaac caaacaacct cacagctttg gaaagaacag
     5581 gatccatggg cgttcttcac tgggaggtat gccctgggtg gccataacca cagcatgccc
     5641 ttggtttcaa ccaccagtct gcctgggggc tctacacaga gctagcaggg aggggcatgg
     5701 tactccatcc ctgactcctg ctacctcctc tagttcacaa accatggacc caggaactac
     5761 ctgccaggcc tgcttcttgg taacccgagc caaacatgaa ccggctccct ggagatgtgg
     5821 ctctcacaga gtcttgctcc cccaaaaccc caaattaaaa ggctactttt cttcctattt
     5881 tatggccaaa gctaaaccag gaaggctgag tgaggagggc aggtagcagg cagaactctc
     5941 caacccccca aggcccagcc cagatcccgt ctcatgacct tatggcttct tggcacaagt
     6001 cctgtctctc ccaccactcc tctcatcaac ttgcccagcc ctgcctcaaa cccagactgg
     6061 actttcccca agggctacct aagaggcttc tctccagctc agtcctcaca tttgcacagg
     6121 agtggaggtc agtggctctc gtcccacgtg tggtcacagc tgtataggat caggctggat
     6181 ggtgccacag ctcaggtccc actgcctgac agggtgccaa ggtgagaaga gctagctccc
     6241 acaggagggc ccagaaggaa tcagtcaacg gggacatctg tcagaaaacc tgagagggtc
     6301 tctattgaca gagaaggcca agaatgggag gcagggcctt gggcagttga ggacacagtg
     6361 gacagggatc aggatgggcc tcaaagttct catttagttc ctccaaataa gcattagact
     6421 gacaccaaag tttcatctct ggcatccatt cttctactcc tcagcctaac ctcacggata
     6481 gatcaacgct ttcctgagct tgtcctgact gacacagcct ccgcccattc atcttcctcc
     6541 gcctgacctt ccagtcaatc acccctgtct gtcaaccttg acccatctgc aaatccatct
     6601 tcccacctgt ccattgctcc atccacactg tctctccacc ccaccatccc agcataccat
     6661 tcctacatcc aaatgccttc cagccccatg cacacagcca cccccaggtc catcatctct
     6721 ctgtccctgt attcagagtt ttatcagctc cctcagtgta ccaaagacac caggtcctcc
     6781 catgccctag actctgcttg ccctaaaccg gccagggctg ctccaggaat cccctaccca
     6841 tgaggcaaca tcccgcatcc cctaccccag cactctgcct caccatggtg tccagacagc
     6901 aggcattgtg gacaggttgg acacgttctt gtggcagctg tgacacatct ggagctgctt
     6961 ggggagagaa gggagtgaaa actgtgctgg gagcgggtct gtacatctgc tcacaagctc
     7021 tgggaggctg ccttaggcag ccctgttccc tgaaagtagg gcagtccttg tttctaggag
     7081 tctgtccaga agagggatct cggaagagga aggcaagcca gggccggcct cccttgggat
     7141 aggagtgctg ttagccttgt gccccaggac ccttgtctca tcttctctgt taggatccca
     7201 aggagctcag agtcagacgt gtccagcctg cccctaccaa atcagccaat ggtgaggaat
     7261 atttgctggg tgtttggggt catccgcatc cccccatacc tcattgcttt tcctgaacct
     7321 cctactatgt aggaaagttt ctgaaatgag gctgaggaga gacccctggg ttaccatcat
     7381 gctggccaga ggaagagaaa agagggagag aaacctgagg cgagctgggc tcaggggacc
     7441 agccgtctct tcctggagac agctcgctga caaagcccag gacagtcaac cagcaacttg
     7501 cacaagtccc cacatcctag aaaactctgt cttgttttcc gttccttttc cttcaattca
     7561 gttggcccgt agggtaccaa gccagactgg gcgataggaa tgcagcatcg actcaaaagt
     7621 atggcctgcc cattacatcc tctaaggctc ctgctcccaa gccagacaag agacccagca
     7681 gccctcggcc cacactgtat ctggggtggg cacggcagca cacagcctgc cagggaagcc
     7741 actgcttctc cccctacagg agctggggga agagtactgg atgctttgtt cacgaaaagc
     7801 tgtgttccac agccctactc atctggtgct gtgtcccacc acccaccgtt atctactgct
     7861 gtcctatatg tttgccctgt gggccacgga cacggtgatc aggttaatta catctgtgta
     7921 ataaagtgag catttgctat ga
//
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