U.S. flag

An official website of the United States government

PREDICTED: Mus musculus cystinosis, nephropathic (Ctns), transcript variant X4, mRNA

NCBI Reference Sequence: XM_006534535.5

FASTA Graphics 

LOCUS       XM_006534535            2467 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cystinosis, nephropathic (Ctns), transcript
            variant X4, mRNA.
ACCESSION   XM_006534535
VERSION     XM_006534535.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006534535.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..2467
                     /gene="Ctns"
                     /note="cystinosis, nephropathic; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 10 ESTs, 290 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
     CDS             366..1145
                     /gene="Ctns"
                     /codon_start=1
                     /product="cystinosin isoform X3"
                     /protein_id="XP_006534598.1"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
                     /translation="MNPRIRFLVIHSRIVSIINQVIGWIYFMAWSVSFYPQVIQNWRR
                     KSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNGVNPVDSNDAFFSL
                     HAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFC
                     FSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQW
                     TLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKKPGYDQLN"
ORIGIN      
        1 tgacagctgg cccctctttc acacaaagtc ggcggagctc agagagtcct tacactccta
       61 agcggtttct ggtgcgagat tgttgctttt ggtgaggtct gtccaccaag cctgggaagc
      121 tgtcagttct gagaagtcag agaccatgag gaggaattgg ctgcttattt tgaccctttt
      181 tctcttgatg ttcatagaga agtatgagtc aactgtcagt ctcactgctc ctcccaccgt
      241 gaagctggaa aatggcagtt caaccaacgt cgacatcacc cttgggcatc cactaaattc
      301 gaccttggtg atcacttttg aagtcacgtt tcgctcaaaa aatctgacta ttgtggagct
      361 tcctgatgaa ccccaggatc cggttcttgg tgatacacag cagaatcgtt agcatcataa
      421 accaggtgat tggctggatc tacttcatgg cgtggtctgt ctccttttac ccacaagtga
      481 tccagaactg gagacggaaa agtgtcattg gtctcagctt tgatttcttg gccctgaact
      541 tgacgggctt cgtggcctac agtgttttca acatcggtct tttgtgggtg ccctatatcc
      601 aggaggagtt tctcctcaaa taccccaatg gtgtgaaccc cgtcgacagt aatgatgcct
      661 tcttcagctt gcatgctgtc gccctcaccc tgattgtcat cctgcagtgc tgcctgtatg
      721 agcgaggcaa ccagcgtgtg tcatggccct ccattggctt cctggtactc gcatggctct
      781 ttgtcctagt caccatgatt gtggctgcag tcggtatcac cacatggctc cagttcctct
      841 tctgcttctc ctacatcaag ctcatcatca cactgatcaa gtatttccca caggcctata
      901 tgaacttcta ctacaaaagc accaagggct ggagcattgg cggtgtgctc ctcgatttta
      961 cagggggcag ctttagcctc ctccagatgt tcctccagtc ttacaataat gaccaatgga
     1021 cattgatctt cggagaccca accaagttcg gacttggcgt cttcaccatc ttctttgatg
     1081 ttgtcttctt catccagcac ttctacttgt acagaaagaa accagggtac gaccagttga
     1141 attagaatcc agagacccag tgtaaacagc cagggcctgg gccctggtag gaaaggttgt
     1201 atccagcaaa ggccagagaa gcagctggca cacagggctg gaacagtatg ccaacaagag
     1261 cagcattctc ttcctcaaga atcaaaagcc ttaagctcag cctgcctgtc ttcatccagg
     1321 cctctcctga accatggagg actccctctc tggaacagac acctgactct gcttgagact
     1381 gaaagctaga cttgaggcag tctctcccaa ctttaaagct ccagccctct gctggaggca
     1441 cccagccctc ctgcgtcttg atataccatc tctctctctt taaggcttca ggcagcacac
     1501 acaggtccag acagccatcc cagccagaac tgggcatcat gtttgcagct gatgaccttg
     1561 ccccaaagca ccaatatttc tgggagcagc ttgaaaagct aaccttgcaa ctgggagagc
     1621 caagggtgct ttgtcccacc acagtgttca cagagaccaa gcagccaggt gctgtggccc
     1681 atggacttga aggtgctgat gctggtggtg gaggggagag aactgtggga tcaagctttg
     1741 gggtccttgc tctcggggcc actttcctta tgctcattct atataacgct gctctagtaa
     1801 ctgcagaaca agaggcccag gccagtgcct ggtaaagtat atttctgatc cctgaggtgc
     1861 ctgccagatt ggtctgaagt ggacccgtac ctgctgccct ccggatcttt gcacacaaag
     1921 ataccacagt acctttttta tttttatttt acctccaagg tatattttaa aatggctttt
     1981 cttttgccct ctttcctacc tccactttct gagagtcgga tggagcacca tcttgagtcc
     2041 ccagactccc cgtaacctta cacctatgga gcaggtactc aggaccagcc tgtgccttag
     2101 aagcccatca gtcaatcagt aagctgccct ggatgggaag ggaggcctcc ttccccagcc
     2161 ccagactgag actccaactc ctcagctgtt gaggagcctc agcgcacagg ggcttacctc
     2221 ctatgttgct tgtggtccca ccctgatccc acacctcctt ccttctcatc ccattattct
     2281 tcctacgcca ggtagggaag gaaccagggt gtgccttgag tttatcaatc tgtttctttt
     2341 gtttcttata agacgaatat tgagggatcc ttgtatttct ttcttttgta tttttttctt
     2401 gttcggtttc atttttgtgg cgtgtgtgtg tgtccttaat taaaaggtgg tttgtttctt
     2461 atttgta
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.