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NCBI Reference Sequence: XM_017314354.3
FASTA Graphics
LOCUS XM_017314354 4919 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus NLR family, pyrin domain containing 1A (Nlrp1a), transcript variant X1, mRNA. ACCESSION XM_017314354 VERSION XM_017314354.3 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_017314354.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4919 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="11" gene 1..4919 /gene="Nlrp1a" /gene_synonym="CARD7; DEFCAP; Gm14; Gm15; NAC; Nalp1; Nalp1a; Nlrp1; PP1044" /note="NLR family, pyrin domain containing 1A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 3 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:195046" /db_xref="MGI:MGI:2684861" CDS 466..4014 /gene="Nlrp1a" /gene_synonym="CARD7; DEFCAP; Gm14; Gm15; NAC; Nalp1; Nalp1a; Nlrp1; PP1044" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 1a isoform X1" /protein_id="XP_017169843.1" /db_xref="GeneID:195046" /db_xref="MGI:MGI:2684861" /translation="MEESQSKQESSTKVAQHEGQEDVDPTFKTKKLMEVELMKHRVQL ERNLKLRTFPGARTKQVKEALYPLLTWSSKSKNLFQNFTKLLLFKKLCQRGSENLVRE SWYPCVPEEEAHMIDIQDLFGPNLGTQKKPQLVIIEGAAGIGKSTLARLVKRAWKEGK LYRNDFHHVFFFSCRELAQYEQLSLAELIVQGQEVPTAPIRQILSHPEKLLFILDGID EPAWVLADQNPELCLHWSQTQPVHTLLGSLLGKSILPGASFLLTTRTTALQKFIPSLE QPCQVEVLGFTLFERKNYFYKYFGKKKGGVTTFTLVKSNSALLTLCEVPWVCWLVCTC LKKQMEQGGELSLTSQTTTALCLKYLSLTIPGQHMRTQLRDLCSLAAEGVCQRRTLFS ESDLCKQGLDEHAIASFLKIGVLQKQASSLSYSFAHLCLQEFFAAMSYILDDSEERHA DMKNDRIVETLVERYGRQNLFEAPTVRFLFGLLSKEELKKIEKLFSCSLHGKTKLKLL WHILGKSQPHQPPCLGLLHCLYENQDMELLTHVMHDLQGTIVPGPDDLAHTVLQTNVK HLVIQTDMDLMVVTFCIKFCCHVRSLQLNRKVQQGHKFTAPGMVLYRWTPITDASWKI FFSNLKLARNLEELDLSGNPLSYYAVHSLCTTLRKRGCQLKTLWLVECGLTSTYCSLL ASVLSARSSLTELDLQLNDLGDGGVKMLCEGLRNPACNLSILWLDQASLSDQVIAELR TLEAKNPKLLISSTWKPHVMVPTMNMDKEEVGDSQALLKQQRQQSGDKHMEPLGTEDE FWGPTGPVTTEVVDRERNLYRVQLPMAGSYHCPSTGLHFVVTRAVTIEIEFCAWSQYL DKTPLQQSHMVVGPLFDIKAEQGAVTAVYLPHFVALQEGIVDSSLFHVAHFQEHGMVL ETPARVEQHYAVLENPSFSPMGILLRMIPAVGHFIPITSTTLIYYHLYLEDVTFHLYL VPNDCSIRKAIDDEEMKFQFVRINKPPPVDALYLGSRYIVSSSKLVEIIPKELELCYR SPGESQLFSEIDIGHMDSEIKLQIKDKRHMNLKWEALLKPGDLRPALPKIATAPKDAP SLLHFMDQHREQLVARVTSVDPLLDKLHGLVLSEDSYEVVRSETTNQDKMRKLFSLSR SWSWDCKDQFYQALKETHPHLVMDILEKLGGVSVKS" ORIGIN 1 actaatggaa gagggaactg agctcagaca tgagtcctgt ggtcaggcaa gcagggcttt 61 ctgcaaaccc ggaagaagct ctcaccctga ctcctccagc ccaggcatct gcagagactt 121 aacaggaaac aagctgagta atgttcaacc tccattccca gtgttcagag gaagtacatc 181 tgccgttctc tgatgcctgc cttcctgaaa atgggccaga gtctctttca cttttggaga 241 ccagtttctt agctgaggag ccttgttcaa agacacacac tccagtgggc cccatagagg 301 agcagggtct cctctatcac ttctgatcaa acacccattc acagagcaga actacctggc 361 agagacaaga agccactggt ctcctgcttg caacaacaga agagcgtctt gaagcaataa 421 gagcacaaac tgctcagaga agcagtattc aagggctcta tcatcatgga agaatctcag 481 tccaagcagg aaagtagcac aaaagtggct cagcatgaag gtcaagagga tgtggaccca 541 accttcaaaa caaagaaact tatggaggtg gagctaatga agcacagagt gcagctagag 601 aggaacttga agctaagaac ctttccagga gcacgtacga agcaagtaaa agaggctctt 661 taccctcttc taacatggtc atcaaaaagc aagaatctgt tccaaaattt cacaaaacta 721 ctactcttta aaaaattgtg ccaaagaggc tcagaaaact tggtcaggga aagctggtat 781 ccatgtgtac cagaagaaga agcacatatg attgacatcc aagatttatt tggcccaaac 841 ttaggtactc agaaaaagcc tcaattagtc ataatagaag gagctgctgg gattgggaag 901 tcaacactgg ccagacttgt gaagagagcc tggaaggaag gcaagcttta caggaatgac 961 ttccatcatg tcttcttctt cagctgcaga gagctggccc agtatgagca gctgagtctg 1021 gctgagctca tagtacaagg ccaggaagtg cccacagctc ccattaggca gatcctgtct 1081 caccctgaga agttgctctt cattctggat ggcatagatg agccagcatg ggtcttagca 1141 gaccagaatc ctgagttatg tcttcactgg agtcaaaccc agcctgtgca cactctgctg 1201 ggcagtttac ttgggaaatc catccttcct ggggcttcct tcttgctcac aactcgcacc 1261 acagctctac agaaattcat tccttccctg gagcagccat gtcaagtgga agtcctagga 1321 ttcactttgt ttgaacggaa aaactatttc tacaaatatt ttgggaagaa aaaaggtgga 1381 gttactactt ttacattagt taaatcaaac tcagcgctcc tgactctgtg tgaagttccc 1441 tgggtgtgct ggttggtctg cacttgcctg aaaaagcaga tggagcaggg tggagagctc 1501 tcactgacct cacagaccac cacagcactc tgcctgaaat acctttccct gacgatccca 1561 gggcagcaca tgaggaccca gctcagagac ctctgctcac tggctgctga gggggtctgc 1621 caaagaagga ccctgttcag tgaaagcgat ctctgtaagc aagggttaga tgagcatgcc 1681 attgccagtt tcctgaagat tggtgtcctt caaaagcagg ccagctctct gagctacagc 1741 tttgcccact tgtgtcttca ggagttcttt gcagcaatgt cctacatctt ggatgatagt 1801 gaggaaagac atgctgatat gaaaaatgac agaattgtgg aaacactggt agaaaggtat 1861 ggaagacaaa acctgtttga ggcacccact gtgcgttttt tatttggtct tttgagtaaa 1921 gaggaattga aaaaaataga aaagctcttt tcctgcagcc ttcatggaaa gacaaagttg 1981 aaactactat ggcacatcct agggaaatcc caaccccatc aaccaccttg cctgggtttg 2041 ctccactgtc tgtatgaaaa tcaggatatg gagctcctga cacacgtgat gcatgatctg 2101 caaggaacaa tagtgcctgg accagatgat ttggcacaca cagtgttgca gacaaacgtg 2161 aagcacctgg tgatacagac agacatggac ctcatggtgg ttactttctg cattaagttc 2221 tgctgtcacg tgaggagtct tcagctgaac aggaaggtac agcagggaca taagtttacg 2281 gcccctggga tggttctgta cagatggacc ccaatcactg atgccagctg gaagattttc 2341 ttctccaatc ttaagttagc cagaaacctg gaggagttgg acctaagtgg aaatccactg 2401 agctactatg cagtacacag tctttgtacg accctgagaa agcgtggctg ccaactaaag 2461 actctgtggc ttgttgaatg cggcctcaca tccacatact gctcacttct ggcctcagta 2521 ctcagtgccc gctccagcct gactgagcta gacctgcagc tgaatgacct gggtgatggt 2581 ggtgtgaaga tgttgtgtga ggggctcagg aatcctgcct gcaatctcag catcctgtgg 2641 ctggaccagg catctctcag tgaccaagtg attgcagagc tcagaactct ggaggcaaag 2701 aatccaaagc tgctcatctc cagcacatgg aagccacatg tgatggtccc tacgatgaac 2761 atggataaag aagaagtggg tgatagccag gccctactga agcagcagag acagcagtca 2821 ggagacaaac acatggaacc tctggggact gaagatgagt tctggggccc tacaggacct 2881 gtgactactg aggtggttga cagagagagg aacctgtacc gagttcagtt acccatggct 2941 ggttcctacc actgtcccag tacaggactc cactttgtgg tgacaagggc agtgacaatc 3001 gagattgaat tctgtgcctg gagccaatat ctcgacaaga ctcccttgca gcagagtcac 3061 atggtggttg gacctctgtt tgacatcaag gctgagcaag gagctgtgac tgcagtgtac 3121 ctccctcatt ttgtggccct ccaagaggga atcgtggaca gctccttgtt ccatgttgcc 3181 cactttcaag aacatgggat ggtcctagaa acaccagcaa gggtggaaca gcattacgca 3241 gtactggaaa acccaagctt ctccccaatg gggattctac tgagaatgat tccggctgtc 3301 ggacacttca tccccatcac ttccaccaca ctgatctact atcacctcta tcttgaagac 3361 gtcacctttc acctttacct ggtccccaat gactgcagta ttcgaaaggc cattgatgat 3421 gaagaaatga agtttcagtt tgtgcgcata aacaagccac ccccagtaga cgctctttat 3481 cttggttccc gctatatcgt gtcttcctcc aaattggtgg aaattatccc aaaggaacta 3541 gagctgtgct accgaagccc tggggaatcc cagctcttct ctgagatcga cattgggcac 3601 atggattcag agattaagct gcaaatcaaa gacaagaggc acatgaatct caaatgggag 3661 gccttgctga aaccagggga tctcagacct gcactgccca agattgctac agcccccaaa 3721 gatgctcctt ccttgctgca cttcatggac cagcatcggg agcagctggt ggcccgagtg 3781 acatctgtag atcctctctt ggacaagctg catggtctgg tgctgagtga agattcctat 3841 gaagtagtgc ggtctgagac cacaaaccaa gacaagatga ggaagctctt cagcctcagc 3901 cggtcctgga gctgggattg caaagaccaa ttctaccaag ctctgaagga gacccatcct 3961 cacctggtca tggatatact tgagaagttg ggtggggtct ctgtgaaatc ctgacatcct 4021 ggtggctgaa aagtgagcac tctccttaga gtcctgcctc tgcctgacct ttccttggtc 4081 ctgagttgct ccatctgtaa ccaatggcca tctgagtttc ctttcttgtg gcagtgcttc 4141 catgacattt cttggtgatc catatgatcc cttttggcct tccccagcca tatgttaatg 4201 tggaataagc atctcagaaa aaatccagtg gggccatgtc tattcagacg ttgtccccca 4261 tgttcttatg atcaaagcag ccagtctaga gacagcctga cccaccatga atgcaagcag 4321 ggctgaggat catgggactg gaaagtgagt gtcttatgaa taggaaagga agggggcttt 4381 ttaaactcat gttgtgtgct cagaaacaga ggtgtagaga agtcacatgg tgcagcatgg 4441 gactcactgt cagaaacacc ccagattcag tgcacattgt aatttaatct tgggcacttg 4501 catatacaca tgccttctgt tcttgtgatg aatttgcaaa cctcgcattt tgttatatca 4561 tcccatatgg aggtgtgtgt cacagcttag gaaactgata tgtgatggta gaccagatga 4621 ctgaacagag gctcagtggt tagcagttgc tcttgagatg gtcagagtcc tattcccagc 4681 acccatttca ggcagctcac aactgtgaat aacaccaacc tcactggatc caacagcctc 4741 cttcccactt cttggtcacc catatataca ttcacatgca caaaataggt ttttaatttt 4801 tataaaagaa tgaataataa aatgggattc ttctccattg ctcacccatc tgtagtctcc 4861 cctcccccag cctgaaacct gcttgctcag gggtggagct tcctgctcat ttgttctgc //
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