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PREDICTED: Oreochromis niloticus sine oculis binding protein homolog (sobp), transcript variant X3, mRNA

NCBI Reference Sequence: XM_025900889.1

FASTA Graphics 

LOCUS       XM_025900889            8379 bp    mRNA    linear   VRT 26-JUL-2018
DEFINITION  PREDICTED: Oreochromis niloticus sine oculis binding protein
            homolog (sobp), transcript variant X3, mRNA.
ACCESSION   XM_025900889
VERSION     XM_025900889.1
DBLINK      BioProject: PRJNA354796
KEYWORDS    RefSeq.
SOURCE      Oreochromis niloticus (Nile tilapia)
  ORGANISM  Oreochromis niloticus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini;
            Oreochromis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_031983.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oreochromis niloticus Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8379
                     /organism="Oreochromis niloticus"
                     /mol_type="mRNA"
                     /isolate="F11D_XX"
                     /db_xref="taxon:8128"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /linkage_group="LG19"
     gene            1..8379
                     /gene="sobp"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100709509"
     CDS             627..3254
                     /gene="sobp"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X3"
                     /protein_id="XP_025756674.1"
                     /db_xref="GeneID:100709509"
                     /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKSFAENTMNELLG
                     WYGYDKVELRDSDSLEIGEMPQHISVLKENSLPKIPASTENSEDSPDRANSFQSLPAS
                     RNGLTETSTTPSTSTPSTKEHGNLPIIVPMIPPPLIKPPADEDASNVQIMCAWCQKVG
                     VKRYSLSMGSELKSFCSEKCFAACRRAYFKRNKLGFIRNYTVCDWCKHIRHTKEYLDF
                     GAGERRLQFCSAKCLNQYKMDIFYKETQAALPGALCNPGHGAGGEGKPECSSGVQLLT
                     PESWGTPLTDLRRKAPSPGGPSSTSVLAPSTSSAASPSDTAAVCSPSSSSSAKIPTPR
                     PHESPSLPPPPVPTLHPPVGVPSGSPPMVMTPRGPMPLPLFMEHQMMQQIRPPFLRTS
                     AHPGGPNSPLSNPIIPGIGPPPPPRTLGPASSPMHRPLLSPHVHPSSNPNPGMIPPHP
                     GIPMPGLPPFPPVNMMPNGPIPLPPMMNFGMPSLAPLVPPPTLLVPYPVIVPLPVPIP
                     IPIPIPFNPKSSRDQPESTGSVRSAPESSEASASRPHSPGSSGGDRGSQKIEPAGGRV
                     SPVRSERGRTVELTVKAEDNSGNLCLSSGPGLMDGVIDLTVGQRSCQQQVIHRMLPGV
                     QVKVEPEADSRSPPAAELGREGKSHRDEGEGALLPQELLSAAEPDGATHPNTLESSAP
                     PSSAPSKASVSQKSPHYSNRTTPPSPSTVRTQPPSLPQHQTSPAAPCNVIVNGTGWHP
                     LLTPAFESDRRGEAGEGEAEKHPANGELEREALKENNCSVGEWEPGKRVSAQDEMGNT
                     VEGKPDPDSNLEEGEHAYALPLLSTGGCVVIQPVPKPAADKTAILSCSISAPLSAAGS
                     PELEPPLKRRCLRIRNQNK"
ORIGIN      
        1 atagttttac tgaacccctg caacactggc cgacctgctg aagcgccaca gagctctcca
       61 cccactgtac ttgctcagtt cttcctacgc actgaaactt tgattttgcg gtgttaaatg
      121 actgaaggag aagggttggc aactaacagc atgattgaat gttgctatga ccaacagcag
      181 gctaccctga aaaggctgga ggactgtgtg ggggcacctg tttgctggtt acagactgtc
      241 accatgaggg agcaccgcta agtggatgtg actgctctga ttgcactcca cgggaaagcg
      301 agaagaaata gcctacctct gatcatcaac gcgtcatata atgtttcagc ggacgcccct
      361 ccccctgtct cgttttttcc cctcactcaa cctctccttt gactcacaga ggcggctcac
      421 cactggcgca cggaccgtgg aggatacggg cagaagatgg ctgacttagc cgggcaccgc
      481 aagccctcgg cggcatcacc agcgtcacac gggccgctga aaagctgcaa gacacccgcc
      541 gtctggcgac tgtaaacagc tgcctctctc aacccctcct ctcccctcct caccgcaaat
      601 attgacagaa gtatcacaga gaaaacatgg cagagatgga aaaagagggc agacctccgg
      661 aaaataaaag aagccgaaaa ccagctcacc cagtgaaaag agaaataaat gaagagatga
      721 agagttttgc agagaacacc atgaatgagc tgctgggctg gtacggttat gacaaggtgg
      781 agctgagaga ctctgacagc ctggaaatag gggagatgcc acagcacatc tctgtcctca
      841 aagaaaactc gttgccaaaa atcccagctt caacagagaa cagtgaagac tctccggatc
      901 gagccaacag ctttcaatcg ttgccagcct ccaggaacgg actcacagag acctccacca
      961 cgccgtccac ctccacgccc agcaccaagg agcatggcaa cctgcccatc atagtcccca
     1021 tgatccctcc gccactgatc aagccccctg cagatgagga tgcgtccaat gtgcagatca
     1081 tgtgcgcctg gtgccagaag gtcggcgtca agcggtattc tctgagcatg gggagtgagc
     1141 tgaagagctt ctgcagtgag aaatgcttcg ctgcctgccg cagagcctat tttaagagaa
     1201 acaagcttgg atttataagg aattataccg tgtgtgactg gtgcaaacat attcgccata
     1261 ctaaggagta cctggacttt ggagctggtg agcggaggct gcagttctgc agtgccaaat
     1321 gcctgaacca atataaaatg gacattttct ataaagagac ccaggctgcc cttcctggag
     1381 cgctgtgtaa cccaggacac ggagctggag gggagggtaa gccggagtgc agttctggag
     1441 tgcagctgct cactcctgaa tcctggggaa cgccgctaac ggaccttcga cgtaaagctc
     1501 cctcacctgg agggccttcc tccacctcag ttttggcccc ttccacatct tctgctgcct
     1561 caccctcaga cactgcagct gtctgctccc catcctcctc ctcttcagcc aaaatcccca
     1621 cacccagacc ccatgagagc ccctcacttc ccccaccacc tgttcccact cttcacccac
     1681 ctgtcggggt cccctctggc agccctccca tggtgatgac accccgggga cccatgcccc
     1741 tgcctctgtt catggagcat caaatgatgc agcagatccg ccccccattt cttcgtacct
     1801 ctgcccaccc aggagggccc aacagcccgc tgtcaaaccc aatcatcccc ggtattggtc
     1861 caccaccacc tcctaggacc cttggtcctg catcaagccc catgcacagg cctctgctat
     1921 ctccacatgt ccacccttca tccaatccca accctggcat gatcccccca caccctggaa
     1981 tccccatgcc gggcctacca cctttccccc cagtcaacat gatgcccaat ggacccatcc
     2041 ccctgccccc aatgatgaac tttggcatgc cgtccttggc tccattggta cctcctccaa
     2101 ctctcttggt cccttaccct gtcattgtac ccctcccagt cccaattcct attccaatcc
     2161 ccattccctt caaccccaaa tcctccaggg accaacctga gagcactggt tctgtccgta
     2221 gtgctccaga gtcctcagaa gcttcagcct ctaggcccca ctctccaggc tcctctggag
     2281 gtgatagagg gagccagaag atagagccag ctggagggcg tgtctctcct gtgcggtcag
     2341 agagaggcag gacagtggaa ttgacagtga aggcagagga caactcaggc aacctttgtc
     2401 tcagcagtgg ccctggattg atggatgggg ttattgatct aacagtgggc caaagatcat
     2461 gccagcagca ggtaattcac aggatgctac ctggtgtcca ggtcaaagta gagccagagg
     2521 cggattcaag atctccacca gctgctgagc tggggaggga agggaagagc catcgtgatg
     2581 aaggggaggg ggctctgctc ccacaggaac tcctcagtgc tgcggagccg gatggggcca
     2641 cacaccctaa cacactggaa tcatcagccc caccttccag tgctcccagc aaagcttcag
     2701 tgagccagaa gagtccccac tattctaacc gtacaacacc accctcacca agtacagtac
     2761 ggacccagcc cccatctcta ccccagcacc agactagccc tgctgcccca tgtaatgtga
     2821 tagtcaatgg tacgggatgg catccacttc tcacacctgc tttcgaatct gaccgaaggg
     2881 gagaggcggg agaaggagag gcagagaagc acccagctaa cggtgagctt gagcgtgagg
     2941 cgttaaaaga gaacaattgt tccgtaggtg aatgggagcc aggaaagcgg gtctcggcac
     3001 aagatgagat gggtaacacg gtggagggta agccagatcc tgactccaac ttggaggagg
     3061 gtgagcatgc ctacgcccta ccgctgctgt cgaccggagg ctgtgttgtc atacagcctg
     3121 tgccaaagcc cgccgctgac aagacagcca tcctctcctg ctccatcagc gcaccgctat
     3181 cagccgctgg gagtcctgag ctcgagccgc cgctgaagag gaggtgtctg cgaattcgca
     3241 atcaaaacaa atgaaatgga tgctctgagg accgcagtgc catcaacgac actcacttgt
     3301 ccacccccca cctccaaatc acactactcc acacacacac acacacacac acacacacac
     3361 tgtcctcatc ctcacccatc gtccagtcta ccagcaccac aaatcgcctt tgatgaccga
     3421 tgagtccaaa caaacatgat gatgtgtatc atagctgagt ggactactgt tgtctgtgcg
     3481 acagacactc tgatggccac caggaccgtt tggtctctga actgaagaca gtatattcct
     3541 gcaacaggag gactttaccc cgctgctcct ctcctcattt agagactctc agcccacact
     3601 gcccctttag acttcaatcc accctcccct atcgaacaag tacactctgt attgtctttt
     3661 tactatggaa cgcactgtag tgtccgatat tcaaatctgc tgcttggaaa ttattgaagg
     3721 agcccctaaa actgaaacgc ttcagtccaa ctttgtgcca caccacaggt ataaaatctc
     3781 tgctcctgta agtcttattt ttatcacttg tcactgagct ctagaggcat ttaaaaaatc
     3841 gtcttggcgt ttgcttgttc accagaaagg tttgcacata gataccacac cggttgcttc
     3901 agttcatggg aagatgcgtc aaagcagcca ccatgttgct gaggaggagc aagactttct
     3961 atggaaggag gagatacaca attaaatacc aggatgattt aatgaaattt caaattgatt
     4021 ttcaagctat ttgaattgtc atttccccaa attttatttt gatagttcta aaatatcaga
     4081 aattaagatt acaaatctgc agctgctttt ctgtgatgtt ctaaagactg actctgaaat
     4141 gtaaaaactg atgggattac atcattttca agagtttact gtcaccttga aatatgagct
     4201 gcagacgagt catttggctc aagtgctgct gttcgtgaat gccttttatc ttttatgaat
     4261 gcacacacac aaaaagtaat tctgatgcag ctctgaatgc ttctgtaatg acaattcaag
     4321 cacattttaa gtcagtttaa aagagagttg cacaaagcag cacaaaagtt ctcacgttac
     4381 acaggaatgg ctaagagcac atagtgagct cccccgagca tgatggtggc tgcagagatg
     4441 catctctcaa gcccagcttt ggtatctgtg tgttaataca cgtgcttatt cacaaccagc
     4501 aaaaatgtcc ttgccaacct tgtcaccaag ttctgggtga atccaatagg attaagaaat
     4561 ctgggaaatc tttttttctt tttttggatg ggggcataaa atcaccttca catatgttga
     4621 gaattattct ggagataacc ttcaccagca agtaagtgtg tgggtggaat cgtgcaatct
     4681 ctgccatttt ccgttggcat ctgtctgttt gctctccact gaattcagtt ttagtgttac
     4741 acaaggataa gatggagctg tcgtgataat cattcctatt attgacattt tctctaccct
     4801 ctggaatgct gcccgtgtgc ttaaacagta atctgtgcaa gtaacagtaa taacagagag
     4861 catttcaagg cttacttgca ccaccaaaag aactgagatg gcatggcaat gtggaagcat
     4921 cctccagcct gcagtgggta ctcgcttccg caggctagta cttaatcttt tctataatac
     4981 attaccagtg atgtttctgt catgggttag tttgagactg actgcactga attttgaggg
     5041 gggtgcaggg ggaagccagc tctttcataa attattcttg tgggactgaa gggaaaactg
     5101 ctgaagtaac acaacagaaa catttgaaca gtaaacacac agaggacaaa ttctttatgg
     5161 caatattttg tccactaact ctgccaagtt ggttcttttt ttgccaattc ttttttgttt
     5221 taaggaagta ttttcagcat ttgtagatcc taccaggaag tttgagtaaa tgcaacacaa
     5281 ctgtcaccca tccagtttga tctgatccag ttacacatcg gctgtgagct gggacgccat
     5341 cagacaaagc cagcatttag tttacactcc tatggaggag gtgcactgta ccagtgtgag
     5401 acaaggtatt atcacatgcc aaaggcctct ggtgtgttga aacaaaacat gtcacctagt
     5461 ttttagtgga aatgggattt taaactgaag atttgactgg ataatttata gctgccaaaa
     5521 taacaagcac ttattttgaa aaaaagaaaa gaaaagaagg cccaagagaa gagaagtgga
     5581 tgtcaaaagc atcattacta ttatactctt ttcggtttag acctgtgata tgtcacagta
     5641 agcgtgagat agaatctggc ttaaaacgac aaagtgatct tcaattatcg tttgtcttgc
     5701 accctgattt ttttttatta ttggtataaa agtaaaaaat tgttttctac actgtgtaaa
     5761 gacgaggccg agcttttcct catgcacgta ttcacaagca tacatactta tgtggcacaa
     5821 tgcacatagt aaatttaact ttgtgtttgt gtgtgtgagg caggtgcaag cagagagccc
     5881 agctgagatt acagagtgtt gactcagaat aagcagtgtg caactctatc tgtcgcctct
     5941 tagtcaggca tttaggctta gctcgcctct tgccaaggcc cagctttggt gtcactttaa
     6001 gcttttcctc gtctctgctt catttctctg caagcagagc cagtcaaaat ggtcttttta
     6061 agctcttgcc tgccttttgc tgtattgcac ttaaagagac aggctaacat atgcatctgg
     6121 tgctgttatt ttggttatga gatgctgtaa ttttgaatat agagacctaa tagaactaaa
     6181 tcacactgag gtgcaggaaa tatgaaggaa tgcagttcct gaagtggcca cttgaggctt
     6241 tttccaaaaa caaataagtt caattagctt cctttgtcaa aatagattaa aaagagcaga
     6301 caaccatgtt ttacagcctg gcacaaaagc agtttttgga tagtttcccc tttcataaga
     6361 acaacacttg gtttaggtgt tggtgtcttt tacaacattt ttaattatat tttcagacaa
     6421 ttaatatgcc atctatcagc ccactcaaga ggtttgtgct ttaattttgg tgaatgaatt
     6481 ataatatttt attagtctgt tacttaaaac tcattagcag gcatgtatgt gtggtgcttg
     6541 ctaaccaaac tcacaagtgt tagcaccctt tagcaccctt tcattcagat atggtcactt
     6601 atggctccag catggaaacc agaaaggttt gggcccaagc agcccaagcg caaatgtaga
     6661 gtcttaaaaa tggtcagcgg gtgacggcac ggtggcttag tccatcttaa atatacagtc
     6721 tgtgaatgac acttgcatgt gtgtttaaaa tgctaaaaca gatttgaaaa actcaacagc
     6781 aatgcccatt tccaaaatca tgatccgttt actcttccta cagaactaca ccggtgactg
     6841 tgcagaagga acctttcatt ttcccatgac aagagcagac attatttgga aaatagtaca
     6901 ttaaaggttt ctgaattaag tgggccagaa agagactgtt ctacgacttt ttcaaatcct
     6961 aaccctaacc tgttgcacac aactatttaa gagacattta gttccattat acagaagaga
     7021 caagaaggca aaaatcttta cagccactat acaagatagg aatggagtga aagcatggca
     7081 ggctacaggg aagatatgca aatgtgattt taggctgaat tattccttta agtagagcta
     7141 tttatttctg taatactttc ccaaaaaata cagtttacat cagaagaata taaattattc
     7201 ctctgattta atttcttccc cagagaataa ctctgtttgt ttattgacct ttccctgacc
     7261 tttcttatgg caccatcagg aaaattttta caaatttatt tattacaaat ctcagatatc
     7321 ttaaccagta gtttcatacc gattaaaaag gttgagaggg cttgatttga tgaggaactt
     7381 tctgcaatct gttgttatgt ctgttttcac tcctgcttgg ccctgttaca tagagacgct
     7441 tacttacata cagagactac agcaacatgc ccaattgtgt ctgtttctaa tctgcaccat
     7501 gctgtgttgg cgtcacaagc ggtatgctat ctgtgcctga gacagacacc gaacatgcgg
     7561 aagcctgact ctcgtggaga aaacctagac cgcagagtca gtctttgtga gggcaaccag
     7621 acgcgtgaca aatatccagc attccttttt ttggtgatgg actacaggcc tggtcagcag
     7681 ccttaattat gcaatgacaa ccaactccaa aactgctaaa aacaagtggt ccacaggcaa
     7741 aataaaacat gattcaactt catgttactt ttcagaaaca acggagaagt tgccttaact
     7801 cttgcttgta taatctctcc agttaagaca atgatgctcg cttgtaaaga agactctccc
     7861 ttctttgtac aaaatgaaat ataccagaaa caacaacttt gttatcttgc tagtgtcaat
     7921 gtatagatga tcagcttttt ctgtaacttg tatggaccgt cacatttttg ctaagaagag
     7981 aacccccacc cccaccccac cccttccaga cttccttgtt cctaatcatc caatctgttt
     8041 taactcgtgg tggactgtca atcttttttg tgtacatttt atagtattat ttattgttga
     8101 caagttttgc atttgcaaat aaaaaagtaa aggtggtttg acctgagcat tcgattccaa
     8161 tgtaaatgct tggtgaacag tgacatgctt tttctttctt tttttttatc attgaaatgg
     8221 aggacagtga tatgaggagg cctttttatt atgttgtaac atgtacataa catgtggcca
     8281 aaattgcttt tggagaatgg tcattttttt gtgttgtaac ggtatttgtt ttattcagtg
     8341 aattgcccat gaagacaaat aaataagagg cacacacaa
//
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