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NCBI Reference Sequence: XM_025900889.1
FASTA Graphics
LOCUS XM_025900889 8379 bp mRNA linear VRT 26-JUL-2018 DEFINITION PREDICTED: Oreochromis niloticus sine oculis binding protein homolog (sobp), transcript variant X3, mRNA. ACCESSION XM_025900889 VERSION XM_025900889.1 DBLINK BioProject: PRJNA354796 KEYWORDS RefSeq. SOURCE Oreochromis niloticus (Nile tilapia) ORGANISM Oreochromis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031983.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oreochromis niloticus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8379 /organism="Oreochromis niloticus" /mol_type="mRNA" /isolate="F11D_XX" /db_xref="taxon:8128" /sex="female" /tissue_type="blood" /dev_stage="adult" /linkage_group="LG19" gene 1..8379 /gene="sobp" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:100709509" CDS 627..3254 /gene="sobp" /codon_start=1 /product="sine oculis-binding protein homolog isoform X3" /protein_id="XP_025756674.1" /db_xref="GeneID:100709509" /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKSFAENTMNELLG WYGYDKVELRDSDSLEIGEMPQHISVLKENSLPKIPASTENSEDSPDRANSFQSLPAS RNGLTETSTTPSTSTPSTKEHGNLPIIVPMIPPPLIKPPADEDASNVQIMCAWCQKVG VKRYSLSMGSELKSFCSEKCFAACRRAYFKRNKLGFIRNYTVCDWCKHIRHTKEYLDF GAGERRLQFCSAKCLNQYKMDIFYKETQAALPGALCNPGHGAGGEGKPECSSGVQLLT PESWGTPLTDLRRKAPSPGGPSSTSVLAPSTSSAASPSDTAAVCSPSSSSSAKIPTPR PHESPSLPPPPVPTLHPPVGVPSGSPPMVMTPRGPMPLPLFMEHQMMQQIRPPFLRTS AHPGGPNSPLSNPIIPGIGPPPPPRTLGPASSPMHRPLLSPHVHPSSNPNPGMIPPHP GIPMPGLPPFPPVNMMPNGPIPLPPMMNFGMPSLAPLVPPPTLLVPYPVIVPLPVPIP IPIPIPFNPKSSRDQPESTGSVRSAPESSEASASRPHSPGSSGGDRGSQKIEPAGGRV SPVRSERGRTVELTVKAEDNSGNLCLSSGPGLMDGVIDLTVGQRSCQQQVIHRMLPGV QVKVEPEADSRSPPAAELGREGKSHRDEGEGALLPQELLSAAEPDGATHPNTLESSAP PSSAPSKASVSQKSPHYSNRTTPPSPSTVRTQPPSLPQHQTSPAAPCNVIVNGTGWHP LLTPAFESDRRGEAGEGEAEKHPANGELEREALKENNCSVGEWEPGKRVSAQDEMGNT VEGKPDPDSNLEEGEHAYALPLLSTGGCVVIQPVPKPAADKTAILSCSISAPLSAAGS PELEPPLKRRCLRIRNQNK" ORIGIN 1 atagttttac tgaacccctg caacactggc cgacctgctg aagcgccaca gagctctcca 61 cccactgtac ttgctcagtt cttcctacgc actgaaactt tgattttgcg gtgttaaatg 121 actgaaggag aagggttggc aactaacagc atgattgaat gttgctatga ccaacagcag 181 gctaccctga aaaggctgga ggactgtgtg ggggcacctg tttgctggtt acagactgtc 241 accatgaggg agcaccgcta agtggatgtg actgctctga ttgcactcca cgggaaagcg 301 agaagaaata gcctacctct gatcatcaac gcgtcatata atgtttcagc ggacgcccct 361 ccccctgtct cgttttttcc cctcactcaa cctctccttt gactcacaga ggcggctcac 421 cactggcgca cggaccgtgg aggatacggg cagaagatgg ctgacttagc cgggcaccgc 481 aagccctcgg cggcatcacc agcgtcacac gggccgctga aaagctgcaa gacacccgcc 541 gtctggcgac tgtaaacagc tgcctctctc aacccctcct ctcccctcct caccgcaaat 601 attgacagaa gtatcacaga gaaaacatgg cagagatgga aaaagagggc agacctccgg 661 aaaataaaag aagccgaaaa ccagctcacc cagtgaaaag agaaataaat gaagagatga 721 agagttttgc agagaacacc atgaatgagc tgctgggctg gtacggttat gacaaggtgg 781 agctgagaga ctctgacagc ctggaaatag gggagatgcc acagcacatc tctgtcctca 841 aagaaaactc gttgccaaaa atcccagctt caacagagaa cagtgaagac tctccggatc 901 gagccaacag ctttcaatcg ttgccagcct ccaggaacgg actcacagag acctccacca 961 cgccgtccac ctccacgccc agcaccaagg agcatggcaa cctgcccatc atagtcccca 1021 tgatccctcc gccactgatc aagccccctg cagatgagga tgcgtccaat gtgcagatca 1081 tgtgcgcctg gtgccagaag gtcggcgtca agcggtattc tctgagcatg gggagtgagc 1141 tgaagagctt ctgcagtgag aaatgcttcg ctgcctgccg cagagcctat tttaagagaa 1201 acaagcttgg atttataagg aattataccg tgtgtgactg gtgcaaacat attcgccata 1261 ctaaggagta cctggacttt ggagctggtg agcggaggct gcagttctgc agtgccaaat 1321 gcctgaacca atataaaatg gacattttct ataaagagac ccaggctgcc cttcctggag 1381 cgctgtgtaa cccaggacac ggagctggag gggagggtaa gccggagtgc agttctggag 1441 tgcagctgct cactcctgaa tcctggggaa cgccgctaac ggaccttcga cgtaaagctc 1501 cctcacctgg agggccttcc tccacctcag ttttggcccc ttccacatct tctgctgcct 1561 caccctcaga cactgcagct gtctgctccc catcctcctc ctcttcagcc aaaatcccca 1621 cacccagacc ccatgagagc ccctcacttc ccccaccacc tgttcccact cttcacccac 1681 ctgtcggggt cccctctggc agccctccca tggtgatgac accccgggga cccatgcccc 1741 tgcctctgtt catggagcat caaatgatgc agcagatccg ccccccattt cttcgtacct 1801 ctgcccaccc aggagggccc aacagcccgc tgtcaaaccc aatcatcccc ggtattggtc 1861 caccaccacc tcctaggacc cttggtcctg catcaagccc catgcacagg cctctgctat 1921 ctccacatgt ccacccttca tccaatccca accctggcat gatcccccca caccctggaa 1981 tccccatgcc gggcctacca cctttccccc cagtcaacat gatgcccaat ggacccatcc 2041 ccctgccccc aatgatgaac tttggcatgc cgtccttggc tccattggta cctcctccaa 2101 ctctcttggt cccttaccct gtcattgtac ccctcccagt cccaattcct attccaatcc 2161 ccattccctt caaccccaaa tcctccaggg accaacctga gagcactggt tctgtccgta 2221 gtgctccaga gtcctcagaa gcttcagcct ctaggcccca ctctccaggc tcctctggag 2281 gtgatagagg gagccagaag atagagccag ctggagggcg tgtctctcct gtgcggtcag 2341 agagaggcag gacagtggaa ttgacagtga aggcagagga caactcaggc aacctttgtc 2401 tcagcagtgg ccctggattg atggatgggg ttattgatct aacagtgggc caaagatcat 2461 gccagcagca ggtaattcac aggatgctac ctggtgtcca ggtcaaagta gagccagagg 2521 cggattcaag atctccacca gctgctgagc tggggaggga agggaagagc catcgtgatg 2581 aaggggaggg ggctctgctc ccacaggaac tcctcagtgc tgcggagccg gatggggcca 2641 cacaccctaa cacactggaa tcatcagccc caccttccag tgctcccagc aaagcttcag 2701 tgagccagaa gagtccccac tattctaacc gtacaacacc accctcacca agtacagtac 2761 ggacccagcc cccatctcta ccccagcacc agactagccc tgctgcccca tgtaatgtga 2821 tagtcaatgg tacgggatgg catccacttc tcacacctgc tttcgaatct gaccgaaggg 2881 gagaggcggg agaaggagag gcagagaagc acccagctaa cggtgagctt gagcgtgagg 2941 cgttaaaaga gaacaattgt tccgtaggtg aatgggagcc aggaaagcgg gtctcggcac 3001 aagatgagat gggtaacacg gtggagggta agccagatcc tgactccaac ttggaggagg 3061 gtgagcatgc ctacgcccta ccgctgctgt cgaccggagg ctgtgttgtc atacagcctg 3121 tgccaaagcc cgccgctgac aagacagcca tcctctcctg ctccatcagc gcaccgctat 3181 cagccgctgg gagtcctgag ctcgagccgc cgctgaagag gaggtgtctg cgaattcgca 3241 atcaaaacaa atgaaatgga tgctctgagg accgcagtgc catcaacgac actcacttgt 3301 ccacccccca cctccaaatc acactactcc acacacacac acacacacac acacacacac 3361 tgtcctcatc ctcacccatc gtccagtcta ccagcaccac aaatcgcctt tgatgaccga 3421 tgagtccaaa caaacatgat gatgtgtatc atagctgagt ggactactgt tgtctgtgcg 3481 acagacactc tgatggccac caggaccgtt tggtctctga actgaagaca gtatattcct 3541 gcaacaggag gactttaccc cgctgctcct ctcctcattt agagactctc agcccacact 3601 gcccctttag acttcaatcc accctcccct atcgaacaag tacactctgt attgtctttt 3661 tactatggaa cgcactgtag tgtccgatat tcaaatctgc tgcttggaaa ttattgaagg 3721 agcccctaaa actgaaacgc ttcagtccaa ctttgtgcca caccacaggt ataaaatctc 3781 tgctcctgta agtcttattt ttatcacttg tcactgagct ctagaggcat ttaaaaaatc 3841 gtcttggcgt ttgcttgttc accagaaagg tttgcacata gataccacac cggttgcttc 3901 agttcatggg aagatgcgtc aaagcagcca ccatgttgct gaggaggagc aagactttct 3961 atggaaggag gagatacaca attaaatacc aggatgattt aatgaaattt caaattgatt 4021 ttcaagctat ttgaattgtc atttccccaa attttatttt gatagttcta aaatatcaga 4081 aattaagatt acaaatctgc agctgctttt ctgtgatgtt ctaaagactg actctgaaat 4141 gtaaaaactg atgggattac atcattttca agagtttact gtcaccttga aatatgagct 4201 gcagacgagt catttggctc aagtgctgct gttcgtgaat gccttttatc ttttatgaat 4261 gcacacacac aaaaagtaat tctgatgcag ctctgaatgc ttctgtaatg acaattcaag 4321 cacattttaa gtcagtttaa aagagagttg cacaaagcag cacaaaagtt ctcacgttac 4381 acaggaatgg ctaagagcac atagtgagct cccccgagca tgatggtggc tgcagagatg 4441 catctctcaa gcccagcttt ggtatctgtg tgttaataca cgtgcttatt cacaaccagc 4501 aaaaatgtcc ttgccaacct tgtcaccaag ttctgggtga atccaatagg attaagaaat 4561 ctgggaaatc tttttttctt tttttggatg ggggcataaa atcaccttca catatgttga 4621 gaattattct ggagataacc ttcaccagca agtaagtgtg tgggtggaat cgtgcaatct 4681 ctgccatttt ccgttggcat ctgtctgttt gctctccact gaattcagtt ttagtgttac 4741 acaaggataa gatggagctg tcgtgataat cattcctatt attgacattt tctctaccct 4801 ctggaatgct gcccgtgtgc ttaaacagta atctgtgcaa gtaacagtaa taacagagag 4861 catttcaagg cttacttgca ccaccaaaag aactgagatg gcatggcaat gtggaagcat 4921 cctccagcct gcagtgggta ctcgcttccg caggctagta cttaatcttt tctataatac 4981 attaccagtg atgtttctgt catgggttag tttgagactg actgcactga attttgaggg 5041 gggtgcaggg ggaagccagc tctttcataa attattcttg tgggactgaa gggaaaactg 5101 ctgaagtaac acaacagaaa catttgaaca gtaaacacac agaggacaaa ttctttatgg 5161 caatattttg tccactaact ctgccaagtt ggttcttttt ttgccaattc ttttttgttt 5221 taaggaagta ttttcagcat ttgtagatcc taccaggaag tttgagtaaa tgcaacacaa 5281 ctgtcaccca tccagtttga tctgatccag ttacacatcg gctgtgagct gggacgccat 5341 cagacaaagc cagcatttag tttacactcc tatggaggag gtgcactgta ccagtgtgag 5401 acaaggtatt atcacatgcc aaaggcctct ggtgtgttga aacaaaacat gtcacctagt 5461 ttttagtgga aatgggattt taaactgaag atttgactgg ataatttata gctgccaaaa 5521 taacaagcac ttattttgaa aaaaagaaaa gaaaagaagg cccaagagaa gagaagtgga 5581 tgtcaaaagc atcattacta ttatactctt ttcggtttag acctgtgata tgtcacagta 5641 agcgtgagat agaatctggc ttaaaacgac aaagtgatct tcaattatcg tttgtcttgc 5701 accctgattt ttttttatta ttggtataaa agtaaaaaat tgttttctac actgtgtaaa 5761 gacgaggccg agcttttcct catgcacgta ttcacaagca tacatactta tgtggcacaa 5821 tgcacatagt aaatttaact ttgtgtttgt gtgtgtgagg caggtgcaag cagagagccc 5881 agctgagatt acagagtgtt gactcagaat aagcagtgtg caactctatc tgtcgcctct 5941 tagtcaggca tttaggctta gctcgcctct tgccaaggcc cagctttggt gtcactttaa 6001 gcttttcctc gtctctgctt catttctctg caagcagagc cagtcaaaat ggtcttttta 6061 agctcttgcc tgccttttgc tgtattgcac ttaaagagac aggctaacat atgcatctgg 6121 tgctgttatt ttggttatga gatgctgtaa ttttgaatat agagacctaa tagaactaaa 6181 tcacactgag gtgcaggaaa tatgaaggaa tgcagttcct gaagtggcca cttgaggctt 6241 tttccaaaaa caaataagtt caattagctt cctttgtcaa aatagattaa aaagagcaga 6301 caaccatgtt ttacagcctg gcacaaaagc agtttttgga tagtttcccc tttcataaga 6361 acaacacttg gtttaggtgt tggtgtcttt tacaacattt ttaattatat tttcagacaa 6421 ttaatatgcc atctatcagc ccactcaaga ggtttgtgct ttaattttgg tgaatgaatt 6481 ataatatttt attagtctgt tacttaaaac tcattagcag gcatgtatgt gtggtgcttg 6541 ctaaccaaac tcacaagtgt tagcaccctt tagcaccctt tcattcagat atggtcactt 6601 atggctccag catggaaacc agaaaggttt gggcccaagc agcccaagcg caaatgtaga 6661 gtcttaaaaa tggtcagcgg gtgacggcac ggtggcttag tccatcttaa atatacagtc 6721 tgtgaatgac acttgcatgt gtgtttaaaa tgctaaaaca gatttgaaaa actcaacagc 6781 aatgcccatt tccaaaatca tgatccgttt actcttccta cagaactaca ccggtgactg 6841 tgcagaagga acctttcatt ttcccatgac aagagcagac attatttgga aaatagtaca 6901 ttaaaggttt ctgaattaag tgggccagaa agagactgtt ctacgacttt ttcaaatcct 6961 aaccctaacc tgttgcacac aactatttaa gagacattta gttccattat acagaagaga 7021 caagaaggca aaaatcttta cagccactat acaagatagg aatggagtga aagcatggca 7081 ggctacaggg aagatatgca aatgtgattt taggctgaat tattccttta agtagagcta 7141 tttatttctg taatactttc ccaaaaaata cagtttacat cagaagaata taaattattc 7201 ctctgattta atttcttccc cagagaataa ctctgtttgt ttattgacct ttccctgacc 7261 tttcttatgg caccatcagg aaaattttta caaatttatt tattacaaat ctcagatatc 7321 ttaaccagta gtttcatacc gattaaaaag gttgagaggg cttgatttga tgaggaactt 7381 tctgcaatct gttgttatgt ctgttttcac tcctgcttgg ccctgttaca tagagacgct 7441 tacttacata cagagactac agcaacatgc ccaattgtgt ctgtttctaa tctgcaccat 7501 gctgtgttgg cgtcacaagc ggtatgctat ctgtgcctga gacagacacc gaacatgcgg 7561 aagcctgact ctcgtggaga aaacctagac cgcagagtca gtctttgtga gggcaaccag 7621 acgcgtgaca aatatccagc attccttttt ttggtgatgg actacaggcc tggtcagcag 7681 ccttaattat gcaatgacaa ccaactccaa aactgctaaa aacaagtggt ccacaggcaa 7741 aataaaacat gattcaactt catgttactt ttcagaaaca acggagaagt tgccttaact 7801 cttgcttgta taatctctcc agttaagaca atgatgctcg cttgtaaaga agactctccc 7861 ttctttgtac aaaatgaaat ataccagaaa caacaacttt gttatcttgc tagtgtcaat 7921 gtatagatga tcagcttttt ctgtaacttg tatggaccgt cacatttttg ctaagaagag 7981 aacccccacc cccaccccac cccttccaga cttccttgtt cctaatcatc caatctgttt 8041 taactcgtgg tggactgtca atcttttttg tgtacatttt atagtattat ttattgttga 8101 caagttttgc atttgcaaat aaaaaagtaa aggtggtttg acctgagcat tcgattccaa 8161 tgtaaatgct tggtgaacag tgacatgctt tttctttctt tttttttatc attgaaatgg 8221 aggacagtga tatgaggagg cctttttatt atgttgtaac atgtacataa catgtggcca 8281 aaattgcttt tggagaatgg tcattttttt gtgttgtaac ggtatttgtt ttattcagtg 8341 aattgcccat gaagacaaat aaataagagg cacacacaa //
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