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PREDICTED: Ixodes scapularis uncharacterized LOC8040054 (LOC8040054), transcript variant X3, mRNA

NCBI Reference Sequence: XM_029980885.4

FASTA Graphics 

LOCUS       XM_029980885            6272 bp    mRNA    linear   INV 07-JUL-2021
DEFINITION  PREDICTED: Ixodes scapularis uncharacterized LOC8040054
            (LOC8040054), transcript variant X3, mRNA.
ACCESSION   XM_029980885
VERSION     XM_029980885.4
DBLINK      BioProject: PRJNA704952
KEYWORDS    RefSeq.
SOURCE      Ixodes scapularis (black-legged tick)
  ORGANISM  Ixodes scapularis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida;
            Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae;
            Ixodes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024609839.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 7, 2021 this sequence version replaced XM_029980885.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ixodes scapularis Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6272
                     /organism="Ixodes scapularis"
                     /mol_type="mRNA"
                     /isolate="PalLabHiFi"
                     /isolation_source="laboratory-reared single tick"
                     /db_xref="taxon:6945"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="whole tick"
                     /dev_stage="adult"
                     /geo_loc_name="USA"
                     /collection_date="2020-07-15"
     gene            1..6272
                     /gene="LOC8040054"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 5 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:8040054"
     CDS             133..4605
                     /gene="LOC8040054"
                     /codon_start=1
                     /product="uncharacterized protein LOC8040054 isoform X3"
                     /protein_id="XP_029836745.2"
                     /db_xref="GeneID:8040054"
                     /translation="MAMRWVFGHETRTSSWLPPVDSWSSSCTGLPYGWEAAVDKNGRS
                     YFINHVSKTTTYEDPRKDYEEEPPPSPREVELLRDPQLGFGFVAGSEKPVIVRFVTEG
                     GPSEHKLQPGDQILGINGEDVKCAPREHVIELVKSCKQSVKLVVCQPHVNNTTRKSAL
                     LTAAKKAKLKSNPSRVRFAEGVVINGSPLYCPSTFESCVPFLPNVMKVFLENGQTKSF
                     KYDSSTTVQDVLNSLQEKLSVKSMEHFGLVVEHIKSVRRNKLTLLDPKDSLAKIAARP
                     GAHHLRCLFRVAFVPLDAYDLLQKDPVAFEYLYVQCCNDMVQERFAPELKYDVALKLA
                     ALHIHLHALTSGMQGKITIKAVERESGLKRFVPASLLETMKRKELRKLLSHFLKQNQS
                     LCAPGQKQLTPLQAKLHYLKIVGELPSYGAKCFSTCMKDSNMETGILISPKFGISQIN
                     SARGAVPIQPVTLAQIAEVSSVTITKDDDLSYAVEISIKDPDKESLKFGLEDRETAEL
                     VFILKGYHKLLASRDLPIHWETDDPWKVETSPCFHGSHIVCPTPWSYAPSADDQDGPI
                     VKRVDLAVPPPAYVPCELPDRGMSRSSSREQCSLTSLTNSVDHNMNETSLLQPLSPSR
                     VPRSSALGSLKMETSFEPRSPNGHGFPSDSASSTADESEERLVKFDIMDDDDDDDDEE
                     PILLEVKNEEVLRRVSEMRRMVADAEHYLSDGRPRPSAADMHSESTSSDEREMDCSLE
                     PRGTIKAADSLLLLTQLDDVSEAVNQVAVPDEVSPSESDTDSFGTPNRSPLHRTSRLT
                     GAADPEAPPARTRSGSSFGLHSPDMLPGIGSSDRDLLELLKQLQSNPEIQLPFAEGTL
                     YLDPDIIDLTMIPPPMTPDVELCDASPGTLDLPPTPFSDKGVPRSGTGATELDGGHSM
                     VPPPCSIADSARVVAELDDLCDALTEMRASGDELGCHALFQQLGCEDLETFIASVTIP
                     PPPLPGSGPSDDGDSGVTDDDIAAYIIPPPPPSCEESTQAQNQVLARFERASEDMRRM
                     MMREDGQADGRADDAKVAAVGPPPLEALKVFDVLAGYGDLLVTDSSNSSSPNPAVRET
                     DRSSHTYENLDLPPSRNRGGPLLNGGGARDYEEVAFGGEGKPRVPPRLRKTGSAETCV
                     KRDRTGSCDGPEASDSAAAQRQVARSHSWTNLHGLSLARKNSMGKPPLPPGSPSLQSR
                     TGHSTASSADHGRSLTRPGSASPRTASPLSPRKTTSPVRAATIGRAGGRSFNGPPTSF
                     GNSNAGDVYTEAGGGDETVPSLFDGVNGCLCLPFATNNPTTPEMPCLVCNRGEALGSA
                     LGNENAPDAPFLRAQEQVYTMVLRIDDVARDATALQRSATDTSVGDKFSSARDELVTE
                     SRQFVTASKLFVRSATEGAPNVLEHLVTCVALLDRMFAACEMLVLSGGSAWSGLVEQV
                     KAVALAYTRAAGAARKSAQSGANGGAVGSLMHQATDLASALTALMRTLRSFDNS"
     polyA_site      6272
                     /gene="LOC8040054"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gacttcctgt gttgtgcgcc ggagttcggg ccgtcgccga aaagttaagc cttgccagaa
       61 ctgcatcggc cagaccacgt tggagagcgc gaacaaatcg ctgccaaagt ctttctttgg
      121 aatcatgtgg ctatggccat gagatgggtg ttcggccacg agacgcggac gtcgtcatgg
      181 ctgcctccag tggactcatg gagctcgtcg tgcacgggct tgccttacgg ctgggaggct
      241 gccgtggaca agaacggacg aagctacttc atcaatcacg tgagcaagac gacgacgtac
      301 gaagaccctc gcaaggacta cgaggaagag cctccccctt ctccgcgcga ggtcgagctg
      361 ctccgagacc cgcagctggg gttcggcttc gttgccggaa gcgagaaacc ggtcatcgtt
      421 cgcttcgtga ccgaaggtgg accaagtgaa cacaagcttc aacccggaga ccagattctc
      481 ggaatcaacg gagaggatgt caagtgtgct cctcgggaac atgtgataga gctcgtcaag
      541 tcatgcaagc agtctgttaa actggtcgtt tgccagcccc atgtgaataa tacaactcgg
      601 aagtcggccc tactgacagc agcaaaaaag gccaagttaa agtccaatcc atccagggtt
      661 cgctttgcgg aaggcgtggt catcaatgga tccccgctgt actgcccatc tactttcgag
      721 tcgtgtgttc ctttcctgcc caacgttatg aaggttttcc ttgaaaatgg acagacaaag
      781 tctttcaagt atgacagctc caccacggtt caggatgttc tcaactccct ccaagagaag
      841 ctctcagtca agtccatgga acattttggt cttgtcgtgg agcacatcaa gtcagtccgg
      901 aggaacaagc tgacgctcct cgatccaaag gattccctgg caaagattgc cgcccgacct
      961 ggtgctcatc atctgcggtg tttgttccga gtcgcctttg tgcctctaga tgcctacgac
     1021 ctgttacaga aggatccggt ggcctttgaa tacctctatg tccagtgttg caacgacatg
     1081 gtccaagaga ggtttgcacc cgagctcaag tatgacgttg ctctcaagct ggccgccttg
     1141 catatccacc tgcatgcact cacaagcggt atgcagggaa agatcaccat caaggctgtc
     1201 gagcgggaga gcggcctgaa gcggtttgtg cccgcctcgc tgctggagac gatgaagcgc
     1261 aaggagctcc gcaagctgct cagccacttc ctgaagcaga accagtcgct gtgcgccccc
     1321 ggccagaagc agctgacgcc gctgcaggcc aagctgcact acctcaagat tgtgggcgag
     1381 ctgcccagct acggggcaaa gtgcttctcc acatgcatga aggattccaa catggagacg
     1441 ggaatcttga taagccccaa attcggaatc agccagataa acagtgcccg tggcgccgtc
     1501 ccaatccaac ctgtaacctt ggcccagatc gcggaagtgt cgtccgtgac cataacaaaa
     1561 gacgacgacc tctcgtacgc ggttgagatc agcataaaag atcctgacaa ggagagtcta
     1621 aagtttggct tggaggatcg ggaaactgca gaattggtct tcatcctcaa aggctaccac
     1681 aagctgctag cctcacgaga tctgccaatt cactgggaaa ccgacgaccc ttggaaagtt
     1741 gagacctctc cctgcttcca cggcagtcac atagtctgcc ccaccccctg gagctatgcg
     1801 ccttcggcgg atgaccaaga cggccccatt gtgaagagag ttgacctggc tgtgccgccg
     1861 cctgcttatg ttccttgcga gctgccggat cgtggcatgt cgcggagcag ctcacgagag
     1921 cagtgttcgc ttacctcgct gaccaactcg gtggaccaca acatgaacga gacaagcctg
     1981 ctccagccgc tcagcccgag cagggtgccc cggtcctcgg cgctggggag cctcaagatg
     2041 gagacctctt tcgagccgag gtcgcccaat ggacatggct tcccctcgga ctcggcatcg
     2101 tcgacagcag acgaatccga ggagcggttg gtcaagtttg acatcatgga cgatgacgac
     2161 gacgacgacg acgaagaacc cattctactc gaggtcaaaa acgaggaggt cctgcggcga
     2221 gtgtcggaga tgcggcgcat ggtggccgac gcggagcact acctctcgga tggcaggccg
     2281 cgaccgtccg ccgccgacat gcacagcgag tcgacgagta gcgacgagcg cgagatggac
     2341 tgcagcctgg aacccagggg caccatcaaa gcggccgact cgctgctcct cctcacccag
     2401 ctggacgacg tgtcggaggc cgtcaaccag gtggcggtgc ccgacgaggt ctccccttcc
     2461 gagtcggaca cggacagctt cggcactccc aaccggagcc cgctgcaccg gacttcgcgg
     2521 ctcaccggcg ccgccgaccc ggaggcgccg cctgcgagga cgcgctcggg ctccagcttc
     2581 gggctgcaca gcccggacat gctcccggga atcgggtcca gcgacaggga cctgctggag
     2641 ctgctgaagc agctgcagtc caacccggag atccagctcc cgtttgcgga gggcacgctg
     2701 tacttggacc cagacatcat cgacctgacg atgatcccgc cgcccatgac accggacgtg
     2761 gagctctgcg acgcgtcgcc ggggacgctg gaccttccgc cgacaccctt ttcggacaag
     2821 ggggtgcccc ggtcgggcac cggggcgacc gagctggacg gaggccactc catggtgccg
     2881 cccccctgct ccattgcaga ctctgcgcgc gtcgtggccg aactcgacga cctctgcgac
     2941 gccctgacgg agatgcgagc ctctggggac gagctgggct gccacgcgct cttccagcag
     3001 ctcggctgcg aggacctcga aactttcatt gcgagcgtca ccatcccccc acccccgctg
     3061 cccggttccg gcccgagcga cgacggcgac tccggcgtga cggacgacga catcgcagcc
     3121 tacatcatcc ctccgccgcc cccgagctgc gaggaaagca cgcaagcaca gaaccaggtg
     3181 cttgcgaggt ttgagcgcgc ctcggaggac atgcggcgca tgatgatgcg cgaggacggg
     3241 caagcagacg gcagggcaga tgatgcaaaa gtcgccgcgg tgggtccccc tcccctggag
     3301 gcactcaagg tgttcgacgt ccttgccggc tacggcgacc tcctggtgac cgactcgagc
     3361 aactcctcct cgcccaaccc tgcggtgcgc gagaccgacc gctcctccca cacgtacgag
     3421 aacctcgacc tcccgccctc gcggaaccgc ggcgggcccc tactcaacgg cggaggcgcc
     3481 cgggactacg aagaggttgc gtttggagga gagggaaagc ccagggtgcc cccgaggctg
     3541 cgcaagacgg ggagcgcaga gacgtgcgtg aagagagacc gcacggggag ctgcgacggt
     3601 cccgaggctt cggacagtgc ggcggcccag cgccaggtgg cacgttcgca ctcgtggacc
     3661 aacctgcacg ggctgagcct ggcacggaag aactcgatgg ggaagccacc cctgccccca
     3721 ggatcccctt ccctgcagtc gagaaccggt cactccacag caagctcggc ggatcacggc
     3781 aggtccctca cacgcccagg gtccgcgagc ccacgcacgg ccagtccgtt gagcccccgc
     3841 aagacgacct cacccgtccg cgcagccacg attggacggg cggggggacg gtccttcaat
     3901 ggccccccga ccagcttcgg caacagcaac gcaggcgacg tctacaccga agcgggtggc
     3961 ggcgacgaaa ctgtgccgtc gctcttcgac ggtgttaacg gctgcctctg cttgccattc
     4021 gcgacgaaca atccgacgac gcccgaaatg ccctgcctcg tctgcaaccg tggcgaggcc
     4081 ttagggagtg cattgggcaa cgagaatgct cccgatgctc cgttcctccg tgcccaggag
     4141 caagtgtaca cgatggtcct gcgcatcgat gacgtggcgc gagatgcgac ggcactccag
     4201 cgttcggcga ctgacacgag cgtcggcgac aagttctcgt cggcccgcga tgagctggtc
     4261 acagagtcgc gccagttcgt gaccgcctcc aaactgtttg tgcgcagcgc caccgagggg
     4321 gcacccaatg tgctggagca cctagtgacg tgcgtggcac tcctagaccg catgtttgca
     4381 gcatgcgaga tgctggtcct ctccggcggt tccgcctggt ccggcctcgt agagcaggtc
     4441 aaggctgtgg cactggcgta tacacgcgcc gccggcgccg cgagaaagtc ggcgcagagc
     4501 ggggccaacg gcggagccgt cggctcgctc atgcatcagg cgaccgacct ggcgtccgca
     4561 ctcaccgcgc tgatgaggac tctgaggtcg ttcgacaact cctaacttgg cccgtctccc
     4621 tgtaaccccc gtgcgatacc cctcgccccc tcccctggtt ttcgttagga cgtgcagtta
     4681 cagtgcgttg ttttttcgga tggacttttt tttttttttt cgtttcgaga tcttatgtgg
     4741 agggaccaat gattggaagg tgcaaggtct gacgagcact tagatcgagt ctgggatggt
     4801 tttagacgca atgttttgtg caaagacgcg ccacagctgc ctgggaagac atccaaggtt
     4861 gtgagggcga gcgagggtcg caaaataatc tcaatatccc gcacaggtcg tctcaccaga
     4921 ggctcgagat gcgatcatcg ataacgacgc acgtcaacaa cagcagggat tgctccagag
     4981 ttataaagcg ctttcttggc gtcttctagc tttgaaacca tatatctaca aaggttacca
     5041 attgtttagg ccgtcaggcc ccttagagaa tgaaacggca gcttggagga cttccagttg
     5101 aaccgaaagc ttagccagct ttgcattttg cttcagaact ggtttctttc tttttgcttg
     5161 ctagtttttt ttttttacta ttacgtgacg tgcgtgacaa acaaggaggc atttggtagc
     5221 atctagctgc ttgcgcaggt cgaatcattc cgtgctcaag ttaggcttta agcagcattc
     5281 gtcttagtcg aagcaactcc cgtttttcaa gtttttgcgt gtgcgcatgt ttttacctgg
     5341 cagaaggaaa actgtcctct taatgttttg gacgattgaa atgacggtca cactgtgctc
     5401 ggaaaacccc tgccgtgcct gtcgactttt ttttacggag cgttttggtg cgaggactgg
     5461 agctagcatt taagccgaca aggagtgtac cgccatctct cccctttttc ttttcactct
     5521 caacctctac tgggaagggg gaaagagaac agtgctcgtt cacagtacca aggttccaca
     5581 caggactaca tcaccaaaca cgtgcgagag agcgagaaaa aaaaaaaaaa aaggaaacat
     5641 gatactcagg cagccatttt tccttgcgct atcgttttta aatgttttgt cgtctccaat
     5701 gcgtgctatc tcacacagtt gccttcggga gagaaatgcg ggtttcttct cccaaaacgt
     5761 tgaagatact gtcctataca gcacagctgt cgtgcaagaa aaggtcggaa agaaccaaaa
     5821 aaagggattg ttcgtgaagc agctgcgagt gtcgcaacag gatgggcatg ggacagtgtt
     5881 gttggggcat tcagagttga agcaataata ccgcacgatt tgcggcaata tgctgcgagc
     5941 atttgacggc ggccacattg ctacaaaggg tggcgcagca gcgcgagagg cggagagaga
     6001 gaaggaatgt gtatttttca tccgtataac tctactatct ttgttaggaa tctcctggct
     6061 atcaagcacg caagacggag tcaaagccca gacatgcgca tgcagacggc atttcgggtt
     6121 ctccgtgctt aacgaccaac tgctcattgt cagtccccaa atgtataata atgacggagg
     6181 gacacctgac ccaaacgacg agataccaac atacaaaaaa aagaatcttc agacttttta
     6241 tttcggaata ataaagagtt tgcaaaagtg tt
//
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