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NCBI Reference Sequence: XM_029980885.4
FASTA Graphics
LOCUS XM_029980885 6272 bp mRNA linear INV 07-JUL-2021 DEFINITION PREDICTED: Ixodes scapularis uncharacterized LOC8040054 (LOC8040054), transcript variant X3, mRNA. ACCESSION XM_029980885 VERSION XM_029980885.4 DBLINK BioProject: PRJNA704952 KEYWORDS RefSeq. SOURCE Ixodes scapularis (black-legged tick) ORGANISM Ixodes scapularis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024609839.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 7, 2021 this sequence version replaced XM_029980885.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ixodes scapularis Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6272 /organism="Ixodes scapularis" /mol_type="mRNA" /isolate="PalLabHiFi" /isolation_source="laboratory-reared single tick" /db_xref="taxon:6945" /chromosome="Unknown" /sex="female" /tissue_type="whole tick" /dev_stage="adult" /geo_loc_name="USA" /collection_date="2020-07-15" gene 1..6272 /gene="LOC8040054" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:8040054" CDS 133..4605 /gene="LOC8040054" /codon_start=1 /product="uncharacterized protein LOC8040054 isoform X3" /protein_id="XP_029836745.2" /db_xref="GeneID:8040054" /translation="MAMRWVFGHETRTSSWLPPVDSWSSSCTGLPYGWEAAVDKNGRS YFINHVSKTTTYEDPRKDYEEEPPPSPREVELLRDPQLGFGFVAGSEKPVIVRFVTEG GPSEHKLQPGDQILGINGEDVKCAPREHVIELVKSCKQSVKLVVCQPHVNNTTRKSAL LTAAKKAKLKSNPSRVRFAEGVVINGSPLYCPSTFESCVPFLPNVMKVFLENGQTKSF KYDSSTTVQDVLNSLQEKLSVKSMEHFGLVVEHIKSVRRNKLTLLDPKDSLAKIAARP GAHHLRCLFRVAFVPLDAYDLLQKDPVAFEYLYVQCCNDMVQERFAPELKYDVALKLA ALHIHLHALTSGMQGKITIKAVERESGLKRFVPASLLETMKRKELRKLLSHFLKQNQS LCAPGQKQLTPLQAKLHYLKIVGELPSYGAKCFSTCMKDSNMETGILISPKFGISQIN SARGAVPIQPVTLAQIAEVSSVTITKDDDLSYAVEISIKDPDKESLKFGLEDRETAEL VFILKGYHKLLASRDLPIHWETDDPWKVETSPCFHGSHIVCPTPWSYAPSADDQDGPI VKRVDLAVPPPAYVPCELPDRGMSRSSSREQCSLTSLTNSVDHNMNETSLLQPLSPSR VPRSSALGSLKMETSFEPRSPNGHGFPSDSASSTADESEERLVKFDIMDDDDDDDDEE PILLEVKNEEVLRRVSEMRRMVADAEHYLSDGRPRPSAADMHSESTSSDEREMDCSLE PRGTIKAADSLLLLTQLDDVSEAVNQVAVPDEVSPSESDTDSFGTPNRSPLHRTSRLT GAADPEAPPARTRSGSSFGLHSPDMLPGIGSSDRDLLELLKQLQSNPEIQLPFAEGTL YLDPDIIDLTMIPPPMTPDVELCDASPGTLDLPPTPFSDKGVPRSGTGATELDGGHSM VPPPCSIADSARVVAELDDLCDALTEMRASGDELGCHALFQQLGCEDLETFIASVTIP PPPLPGSGPSDDGDSGVTDDDIAAYIIPPPPPSCEESTQAQNQVLARFERASEDMRRM MMREDGQADGRADDAKVAAVGPPPLEALKVFDVLAGYGDLLVTDSSNSSSPNPAVRET DRSSHTYENLDLPPSRNRGGPLLNGGGARDYEEVAFGGEGKPRVPPRLRKTGSAETCV KRDRTGSCDGPEASDSAAAQRQVARSHSWTNLHGLSLARKNSMGKPPLPPGSPSLQSR TGHSTASSADHGRSLTRPGSASPRTASPLSPRKTTSPVRAATIGRAGGRSFNGPPTSF GNSNAGDVYTEAGGGDETVPSLFDGVNGCLCLPFATNNPTTPEMPCLVCNRGEALGSA LGNENAPDAPFLRAQEQVYTMVLRIDDVARDATALQRSATDTSVGDKFSSARDELVTE SRQFVTASKLFVRSATEGAPNVLEHLVTCVALLDRMFAACEMLVLSGGSAWSGLVEQV KAVALAYTRAAGAARKSAQSGANGGAVGSLMHQATDLASALTALMRTLRSFDNS" polyA_site 6272 /gene="LOC8040054" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gacttcctgt gttgtgcgcc ggagttcggg ccgtcgccga aaagttaagc cttgccagaa 61 ctgcatcggc cagaccacgt tggagagcgc gaacaaatcg ctgccaaagt ctttctttgg 121 aatcatgtgg ctatggccat gagatgggtg ttcggccacg agacgcggac gtcgtcatgg 181 ctgcctccag tggactcatg gagctcgtcg tgcacgggct tgccttacgg ctgggaggct 241 gccgtggaca agaacggacg aagctacttc atcaatcacg tgagcaagac gacgacgtac 301 gaagaccctc gcaaggacta cgaggaagag cctccccctt ctccgcgcga ggtcgagctg 361 ctccgagacc cgcagctggg gttcggcttc gttgccggaa gcgagaaacc ggtcatcgtt 421 cgcttcgtga ccgaaggtgg accaagtgaa cacaagcttc aacccggaga ccagattctc 481 ggaatcaacg gagaggatgt caagtgtgct cctcgggaac atgtgataga gctcgtcaag 541 tcatgcaagc agtctgttaa actggtcgtt tgccagcccc atgtgaataa tacaactcgg 601 aagtcggccc tactgacagc agcaaaaaag gccaagttaa agtccaatcc atccagggtt 661 cgctttgcgg aaggcgtggt catcaatgga tccccgctgt actgcccatc tactttcgag 721 tcgtgtgttc ctttcctgcc caacgttatg aaggttttcc ttgaaaatgg acagacaaag 781 tctttcaagt atgacagctc caccacggtt caggatgttc tcaactccct ccaagagaag 841 ctctcagtca agtccatgga acattttggt cttgtcgtgg agcacatcaa gtcagtccgg 901 aggaacaagc tgacgctcct cgatccaaag gattccctgg caaagattgc cgcccgacct 961 ggtgctcatc atctgcggtg tttgttccga gtcgcctttg tgcctctaga tgcctacgac 1021 ctgttacaga aggatccggt ggcctttgaa tacctctatg tccagtgttg caacgacatg 1081 gtccaagaga ggtttgcacc cgagctcaag tatgacgttg ctctcaagct ggccgccttg 1141 catatccacc tgcatgcact cacaagcggt atgcagggaa agatcaccat caaggctgtc 1201 gagcgggaga gcggcctgaa gcggtttgtg cccgcctcgc tgctggagac gatgaagcgc 1261 aaggagctcc gcaagctgct cagccacttc ctgaagcaga accagtcgct gtgcgccccc 1321 ggccagaagc agctgacgcc gctgcaggcc aagctgcact acctcaagat tgtgggcgag 1381 ctgcccagct acggggcaaa gtgcttctcc acatgcatga aggattccaa catggagacg 1441 ggaatcttga taagccccaa attcggaatc agccagataa acagtgcccg tggcgccgtc 1501 ccaatccaac ctgtaacctt ggcccagatc gcggaagtgt cgtccgtgac cataacaaaa 1561 gacgacgacc tctcgtacgc ggttgagatc agcataaaag atcctgacaa ggagagtcta 1621 aagtttggct tggaggatcg ggaaactgca gaattggtct tcatcctcaa aggctaccac 1681 aagctgctag cctcacgaga tctgccaatt cactgggaaa ccgacgaccc ttggaaagtt 1741 gagacctctc cctgcttcca cggcagtcac atagtctgcc ccaccccctg gagctatgcg 1801 ccttcggcgg atgaccaaga cggccccatt gtgaagagag ttgacctggc tgtgccgccg 1861 cctgcttatg ttccttgcga gctgccggat cgtggcatgt cgcggagcag ctcacgagag 1921 cagtgttcgc ttacctcgct gaccaactcg gtggaccaca acatgaacga gacaagcctg 1981 ctccagccgc tcagcccgag cagggtgccc cggtcctcgg cgctggggag cctcaagatg 2041 gagacctctt tcgagccgag gtcgcccaat ggacatggct tcccctcgga ctcggcatcg 2101 tcgacagcag acgaatccga ggagcggttg gtcaagtttg acatcatgga cgatgacgac 2161 gacgacgacg acgaagaacc cattctactc gaggtcaaaa acgaggaggt cctgcggcga 2221 gtgtcggaga tgcggcgcat ggtggccgac gcggagcact acctctcgga tggcaggccg 2281 cgaccgtccg ccgccgacat gcacagcgag tcgacgagta gcgacgagcg cgagatggac 2341 tgcagcctgg aacccagggg caccatcaaa gcggccgact cgctgctcct cctcacccag 2401 ctggacgacg tgtcggaggc cgtcaaccag gtggcggtgc ccgacgaggt ctccccttcc 2461 gagtcggaca cggacagctt cggcactccc aaccggagcc cgctgcaccg gacttcgcgg 2521 ctcaccggcg ccgccgaccc ggaggcgccg cctgcgagga cgcgctcggg ctccagcttc 2581 gggctgcaca gcccggacat gctcccggga atcgggtcca gcgacaggga cctgctggag 2641 ctgctgaagc agctgcagtc caacccggag atccagctcc cgtttgcgga gggcacgctg 2701 tacttggacc cagacatcat cgacctgacg atgatcccgc cgcccatgac accggacgtg 2761 gagctctgcg acgcgtcgcc ggggacgctg gaccttccgc cgacaccctt ttcggacaag 2821 ggggtgcccc ggtcgggcac cggggcgacc gagctggacg gaggccactc catggtgccg 2881 cccccctgct ccattgcaga ctctgcgcgc gtcgtggccg aactcgacga cctctgcgac 2941 gccctgacgg agatgcgagc ctctggggac gagctgggct gccacgcgct cttccagcag 3001 ctcggctgcg aggacctcga aactttcatt gcgagcgtca ccatcccccc acccccgctg 3061 cccggttccg gcccgagcga cgacggcgac tccggcgtga cggacgacga catcgcagcc 3121 tacatcatcc ctccgccgcc cccgagctgc gaggaaagca cgcaagcaca gaaccaggtg 3181 cttgcgaggt ttgagcgcgc ctcggaggac atgcggcgca tgatgatgcg cgaggacggg 3241 caagcagacg gcagggcaga tgatgcaaaa gtcgccgcgg tgggtccccc tcccctggag 3301 gcactcaagg tgttcgacgt ccttgccggc tacggcgacc tcctggtgac cgactcgagc 3361 aactcctcct cgcccaaccc tgcggtgcgc gagaccgacc gctcctccca cacgtacgag 3421 aacctcgacc tcccgccctc gcggaaccgc ggcgggcccc tactcaacgg cggaggcgcc 3481 cgggactacg aagaggttgc gtttggagga gagggaaagc ccagggtgcc cccgaggctg 3541 cgcaagacgg ggagcgcaga gacgtgcgtg aagagagacc gcacggggag ctgcgacggt 3601 cccgaggctt cggacagtgc ggcggcccag cgccaggtgg cacgttcgca ctcgtggacc 3661 aacctgcacg ggctgagcct ggcacggaag aactcgatgg ggaagccacc cctgccccca 3721 ggatcccctt ccctgcagtc gagaaccggt cactccacag caagctcggc ggatcacggc 3781 aggtccctca cacgcccagg gtccgcgagc ccacgcacgg ccagtccgtt gagcccccgc 3841 aagacgacct cacccgtccg cgcagccacg attggacggg cggggggacg gtccttcaat 3901 ggccccccga ccagcttcgg caacagcaac gcaggcgacg tctacaccga agcgggtggc 3961 ggcgacgaaa ctgtgccgtc gctcttcgac ggtgttaacg gctgcctctg cttgccattc 4021 gcgacgaaca atccgacgac gcccgaaatg ccctgcctcg tctgcaaccg tggcgaggcc 4081 ttagggagtg cattgggcaa cgagaatgct cccgatgctc cgttcctccg tgcccaggag 4141 caagtgtaca cgatggtcct gcgcatcgat gacgtggcgc gagatgcgac ggcactccag 4201 cgttcggcga ctgacacgag cgtcggcgac aagttctcgt cggcccgcga tgagctggtc 4261 acagagtcgc gccagttcgt gaccgcctcc aaactgtttg tgcgcagcgc caccgagggg 4321 gcacccaatg tgctggagca cctagtgacg tgcgtggcac tcctagaccg catgtttgca 4381 gcatgcgaga tgctggtcct ctccggcggt tccgcctggt ccggcctcgt agagcaggtc 4441 aaggctgtgg cactggcgta tacacgcgcc gccggcgccg cgagaaagtc ggcgcagagc 4501 ggggccaacg gcggagccgt cggctcgctc atgcatcagg cgaccgacct ggcgtccgca 4561 ctcaccgcgc tgatgaggac tctgaggtcg ttcgacaact cctaacttgg cccgtctccc 4621 tgtaaccccc gtgcgatacc cctcgccccc tcccctggtt ttcgttagga cgtgcagtta 4681 cagtgcgttg ttttttcgga tggacttttt tttttttttt cgtttcgaga tcttatgtgg 4741 agggaccaat gattggaagg tgcaaggtct gacgagcact tagatcgagt ctgggatggt 4801 tttagacgca atgttttgtg caaagacgcg ccacagctgc ctgggaagac atccaaggtt 4861 gtgagggcga gcgagggtcg caaaataatc tcaatatccc gcacaggtcg tctcaccaga 4921 ggctcgagat gcgatcatcg ataacgacgc acgtcaacaa cagcagggat tgctccagag 4981 ttataaagcg ctttcttggc gtcttctagc tttgaaacca tatatctaca aaggttacca 5041 attgtttagg ccgtcaggcc ccttagagaa tgaaacggca gcttggagga cttccagttg 5101 aaccgaaagc ttagccagct ttgcattttg cttcagaact ggtttctttc tttttgcttg 5161 ctagtttttt ttttttacta ttacgtgacg tgcgtgacaa acaaggaggc atttggtagc 5221 atctagctgc ttgcgcaggt cgaatcattc cgtgctcaag ttaggcttta agcagcattc 5281 gtcttagtcg aagcaactcc cgtttttcaa gtttttgcgt gtgcgcatgt ttttacctgg 5341 cagaaggaaa actgtcctct taatgttttg gacgattgaa atgacggtca cactgtgctc 5401 ggaaaacccc tgccgtgcct gtcgactttt ttttacggag cgttttggtg cgaggactgg 5461 agctagcatt taagccgaca aggagtgtac cgccatctct cccctttttc ttttcactct 5521 caacctctac tgggaagggg gaaagagaac agtgctcgtt cacagtacca aggttccaca 5581 caggactaca tcaccaaaca cgtgcgagag agcgagaaaa aaaaaaaaaa aaggaaacat 5641 gatactcagg cagccatttt tccttgcgct atcgttttta aatgttttgt cgtctccaat 5701 gcgtgctatc tcacacagtt gccttcggga gagaaatgcg ggtttcttct cccaaaacgt 5761 tgaagatact gtcctataca gcacagctgt cgtgcaagaa aaggtcggaa agaaccaaaa 5821 aaagggattg ttcgtgaagc agctgcgagt gtcgcaacag gatgggcatg ggacagtgtt 5881 gttggggcat tcagagttga agcaataata ccgcacgatt tgcggcaata tgctgcgagc 5941 atttgacggc ggccacattg ctacaaaggg tggcgcagca gcgcgagagg cggagagaga 6001 gaaggaatgt gtatttttca tccgtataac tctactatct ttgttaggaa tctcctggct 6061 atcaagcacg caagacggag tcaaagccca gacatgcgca tgcagacggc atttcgggtt 6121 ctccgtgctt aacgaccaac tgctcattgt cagtccccaa atgtataata atgacggagg 6181 gacacctgac ccaaacgacg agataccaac atacaaaaaa aagaatcttc agacttttta 6241 tttcggaata ataaagagtt tgcaaaagtg tt //
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