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NCBI Reference Sequence: XM_047439196.1
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LOCUS XM_047439196 4102 bp mRNA linear PRI 25-AUG-2024 DEFINITION PREDICTED: Homo sapiens regulatory factor X2 (RFX2), transcript variant X1, mRNA. ACCESSION XM_047439196 VERSION XM_047439196.1 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000019.10) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001405.40-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4102 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="19" gene 1..4102 /gene="RFX2" /note="regulatory factor X2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 33 ESTs, 191 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:5990" /db_xref="HGNC:HGNC:9983" /db_xref="MIM:142765" CDS 260..2431 /gene="RFX2" /codon_start=1 /product="DNA-binding protein RFX2 isoform X1" /protein_id="XP_047295152.1" /db_xref="GeneID:5990" /db_xref="HGNC:HGNC:9983" /db_xref="MIM:142765" /translation="MQNSEGGADSPASVALRPSAAAPPVPASPQRVLVQAASSNPKGA QMQPISLPRVQQVPQQVQPVQHVYPAQVQYVEGGDAVYTNGAIRTAYTYNPEPQMYAP SSTASYFEAPGGAQVTVAASSPPAVPSHSMVGITMDVGGSPIVSSAGAYLIHGGMDST RHSLAHTSRSSPATLEMAIENLQKSEGITSHKSGLLNSHLQWLLDNYETAEGVSLPRS SLYNHYLRHCQEHKLDPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGIRLKPDS PLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQTMAVQSQHH QQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHCEATVDVVMNLQFHYI EKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCDPILRWMRSCDHIL YQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQTKVGVVSAFA QTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESVVQR LEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVI RDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGEFNDLASLSLTL LDKDDMGDEQRGSEAGPDARSLGEPLVKRERSDPNHSLQGI" polyA_site 4102 /gene="RFX2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atagagactg tagccgtgga gactgttact taccaacggg gaccaacacg cagcagccgc 61 tgccgccgcc gcgggagccg ctgcccgaac tcccggcccg aactccaggc ggagttagaa 121 cattccattt ttttatccaa aattatcttt tgctcggatt tgggaactga cttaatacgg 181 agctgggaat ggagacacca aaaacagaac cagacaaagc tgagggtttg ttctcgcccc 241 tcctggacag cacctgagca tgcagaattc cgagggtgga gcggattcgc cagcgtccgt 301 ggctctgcgt ccctcggcgg cagccccgcc tgtgccagcc tccccgcaga gggtgttggt 361 ccaggcagcc agctccaatc ccaaaggggc ccagatgcag ccgatctccc tccccagagt 421 tcagcaggta ccccagcagg tgcagccggt gcagcacgtg tatcctgccc aggtgcagta 481 cgtggaaggg ggagacgccg tctacaccaa tggagccata cgaacagcct acacctacaa 541 ccccgagcct cagatgtacg cccccagcag cacggcttct tacttcgagg ccccaggcgg 601 tgcccaggtg accgtggcag cctcgtcccc gccagcggtc ccctcccaca gcatggtggg 661 catcaccatg gatgtcgggg ggagccccat cgtctccagc gcgggagcct atctcatcca 721 cggggggatg gacagcacca gacactccct ggcccacacc tcccgctcat cgcccgccac 781 gcttgaaatg gcgattgaaa acctccaaaa aagcgaagga atcacatcac acaaaagcgg 841 tttactcaac agccatctcc agtggctgtt ggataattat gaaacagcgg aaggtgtgag 901 tctccccaga agttctcttt acaaccacta ccttcggcac tgccaggagc acaagctaga 961 cccagtgaac gccgcctcct tcgggaaact gatccgttct gtgtttatgg ggctgagaac 1021 gcggcggctg ggcaccaggg gcaactcgaa gtaccattac tatgggattc gtctgaagcc 1081 ggactcacca ctgaaccggc tgcaggagga cacgcagtac atggccatgc ggcagcagcc 1141 catgcaccag aagcccaggt accggccagc ccagaagacg gacagcctcg gggacagcgg 1201 ctcccacagc ggcctgcaca gcactccgga acagaccatg gccgtgcaga gccagcacca 1261 ccagcagtac atagatgtct cccacgtctt ccccgagttc ccagcgcccg acctgggcag 1321 cttcctgctg caggacggcg tcacactgca cgacgtcaag gccctgcagc tggtgtacag 1381 acggcactgc gaggcaactg tagatgtggt gatgaacctc cagttccact acatcgagaa 1441 gctgtggctc tccttctgga actctaaggc ctcctccagc gacggcccca cctctcttcc 1501 tgccagtgac gaagaccccg agggcgccgt cctgcccaag gacaagctta tctccctgtg 1561 tcagtgcgac cccatcctca ggtggatgag gagctgcgac cacatcctct accaggcgct 1621 ggtggagatt ctcatccccg acgtgctgag gccggtcccc agtaccttga cacaggccat 1681 ccgtaacttt gccaagagct tggaaggctg gttgacaaat gccatgagtg acttcccaca 1741 acaggtcatc cagaccaagg tgggcgtcgt cagtgccttc gcccagacgc tgcggcgcta 1801 cacgtccctc aaccacctgg cgcaggcggc ccgggcggtg ctgcagaaca cgtcccagat 1861 caaccagatg ctcagcgacc tcaaccgcgt ggactttgcc aacgtgcagg agcaggcctc 1921 gtgggtgtgc cagtgcgagg agagtgtggt gcagcggctg gagcaggatt tcaagctgac 1981 cctgcagcag cagagctccc tggaccagtg ggccagctgg ctggacagtg tggtcaccca 2041 ggtcctgaag cagcatgccg gcagccccag cttccccaag gccgcccggc agttcttgct 2101 gaaatggtcc ttttacagct ccatggtgat ccgggacctg accctgcgca gcgctgccag 2161 cttcggctcc ttccacctca tccgcctgct ctacgacgag tacatgttct acctggtgga 2221 gcaccgcgtc gcggaggcca ccggagagac gccgatcgct gtgatgggag agttcaacga 2281 tctcgcctct ctgtcgctga cgctgctcga caaagatgac atgggcgatg agcagcgtgg 2341 cagcgaggcg ggcccagacg cccgcagcct gggtgagccc ctggtaaagc gggagcgcag 2401 tgaccccaac cactccctgc agggcatcta gcagccccgg ccggcgcctc ctcgaggttc 2461 caaaagatgc cgcctggtca ctctgggaac ctggatttca ccggctccac caaattagtg 2521 cctcttagat gatgtgatgt ttactttgac tcaagcgggg gctcccgggg tcagtgttca 2581 agaaggaaag cagttgttga agctacagaa gcccaggcca gggctcccac tggctgtagc 2641 tgtgctctgg gtccccaggt ccctgcgcag ccaccagggc cccaccagac catgggttcc 2701 ttattctgga caaaccctcc tctgctggaa ccctggactt tggccccagt ccctttaaga 2761 gctgaaaggg ctgtgctgag agcactggcc tctgcactca actggaacca attttcacca 2821 tgattttaaa aattaaaaaa acctggcaga gcccgactag aaagggacgg cctctcccct 2881 cctacctgcc accgctgggg aggcacagag ctcgccagcg tccctggagt cccctcagga 2941 atggaaagtg gagtgccctt gtctggtagc accatgtggg agggacccag ctgggcgcag 3001 cgccctgtgg ccttttagat ccagacctcc ctgccggatg ccccgaggcg ggaggccggc 3061 tgtgctgcag gaacccatct ccagatgcca aaggacttga ggggcagctg acaatcgctg 3121 tgtcccggca gatccgcagc tcgaaaaaga acaagccaca gaaacgggct cgctcgtgcc 3181 aggacacagc agtgtctttc aaaaaatcaa aaccagaagt tttatcagca gcaggaagga 3241 tgtgggactc tgtccaagtt caccgtcacc atcaagccac tggctgtgga aggagtttgt 3301 ccaacagggt cagtgtcaca gccacaactt cagaaagcag ccatcccgcg tgtcgtccaa 3361 acagcagtgc ctgcgtcccg ctccacggag tcttccagaa cacctccctc tgaactaatc 3421 ccggagcacc ccacccccag cgagtcccac ctggacctct tcaaagtcaa aactcttctc 3481 tcgggacaaa caaatattcg ggactttcga agccctgaac ttgagacacc aagtttgtct 3541 ccatggaaac acgtagccgc tgcagttgga cagctgcgtg ctggagttct gtccccaaac 3601 caactgcaga gaagaaagac gagcctcggc ccaggacgcg atttctaacg aaatgcaata 3661 gttttctctt tttggaaaaa tgtttatacc aatagttttg tgcgctaatt gttattagaa 3721 cgtttcttat gaatgtgtac attgcagtat attcagtccc aaatgttttg ttctcattca 3781 cacagaaggt actaatgtca gctcacgtgg cctttaaaaa cctacttccc cgcccgcagg 3841 agctcagagc atcgctgggc ctgcgccaga gtgaggggtg caggaagaca aagacgcgtg 3901 ctcactttag aaacgaaaag ctgggaataa tcacactgtt tgtctggtcg tatagcccaa 3961 accttagttg aaatcagaca gaaagaatgt ctttaaaata tacatctcct ctccttggag 4021 acactgaagc tcacagttaa cggattgtaa tgcccggctt ttcctcactc ctggtaacca 4081 atacaagctg gtttctgcct ta //
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