U.S. flag

An official website of the United States government

PREDICTED: Homo sapiens zinc finger protein 558 (ZNF558), transcript variant X12, mRNA

NCBI Reference Sequence: XM_054319997.1

FASTA Graphics 

LOCUS       XM_054319997            4854 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens zinc finger protein 558 (ZNF558),
            transcript variant X12, mRNA.
ACCESSION   XM_054319997
VERSION     XM_054319997.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060943) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4854
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..4854
                     /gene="ZNF558"
                     /note="zinc finger protein 558; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 1 EST, 302 long SRA reads, and 70% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     54 samples with support for all annotated introns"
                     /db_xref="GeneID:148156"
                     /db_xref="HGNC:HGNC:26422"
     CDS             531..1739
                     /gene="ZNF558"
                     /codon_start=1
                     /product="zinc finger protein 558 isoform X1"
                     /protein_id="XP_054175972.1"
                     /db_xref="GeneID:148156"
                     /db_xref="HGNC:HGNC:26422"
                     /translation="MAAVILPSTAAPSSLFPASQQKGHTQGGELVNELLTSWLRGLVT
                     FEDVAVEFTQEEWALLDPAQRTLYRDVMLENCRNLASLGCRVNKPSLISQLEQDKKVV
                     TEERGILPSTCPDLETLLKAKWLTPKKNVFRKEQSKGVKTERSHRGVKLNECNQCFKV
                     FSTKSNLTQHKRIHTGEKPYDCSQCGKSFSSRSYLTIHKRIHNGEKPYECNHCGKAFS
                     DPSSLRLHLRIHTGEKPYECNQCFHVFRTSCNLKSHKRIHTGENHHECNQCGKAFSTR
                     SSLTGHNSIHTGEKPYECHDCGKTFRKSSYLTQHVRTHTGEKPYECNECGKSFSSSFS
                     LTVHKRIHTGEKPYECSDCGKAFNNLSAVKKHLRTHTGEKPYECNHCGKSFTSNSYLS
                     VHKRIHNRWI"
     polyA_site      4854
                     /gene="ZNF558"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcctgagtag ctgggactac aggggttacc cccagcagtg tgtgagaatg aagagtgtgg
       61 gccactgtgt ctctgttgac ctgccagata ggaaatagcg ccagagttgc tgcaatccac
      121 gtctccctgg aattcaggag cagcttggct ggaaggctct ggctggaaac ttgcagaagg
      181 ctgtcagctg ggtctgcatc atctgaaggc tcaacgggta ccgggggcca ctccatggcc
      241 tgcgagtcag agctggccgt cggtgggagg cctcagttcc tctccacata ggcctctcca
      301 cagggccact tgagcatctt cccaccatgg caactggtgt cctctagagc aacatccagg
      361 agaccaaggc ggaagcagct gtagtgcctt ctaggacctg gtcctgaaag tcacccctgc
      421 acccaccccc gctgtctcct cagccatatt ctgctggtca cacagagcgc tgcgggataa
      481 aggaggagcg tcctgcttcc cggctgccct gttgctgtcg gagtcacagg atggcggctg
      541 tcatcctgcc ctcgactgct gctccgtctt ccctgttccc agcctctcag caaaaaggac
      601 acacacaggg cggagagctg gttaatgagc tcctgacaag ctggctacgg ggcttggtaa
      661 ccttcgagga tgtggccgtg gagttcaccc aggaggagtg ggcgttgctg gaccctgccc
      721 aaaggacact gtacagggat gtgatgctgg agaactgcag gaacctggcc tcactagggt
      781 gtcgtgttaa taaacccagt ctgatatccc agttggaaca agacaagaag gtggtgacag
      841 aggaaagagg aattctacca agcacctgtc cagatttgga gactctactt aaagccaaat
      901 ggttaactcc taagaagaat gttttcagaa aagaacagtc taaaggtgta aaaacggaaa
      961 gaagtcatcg tggagtgaaa ctcaatgaat gtaatcagtg ttttaaagtc ttcagcacga
     1021 aatctaacct aactcagcac aagagaattc atactggaga aaaaccctat gactgtagtc
     1081 aatgtgggaa gtccttcagt agcagatctt accttactat tcataagaga atccataatg
     1141 gggagaaacc ctatgaatgc aatcactgtg ggaaagcatt tagtgatccc tcatccctta
     1201 gactgcattt gagaattcac actggagaaa aaccctatga atgtaaccag tgttttcacg
     1261 ttttccgcac cagttgtaac ctcaaaagcc acaagaggat tcacacgggg gagaatcacc
     1321 atgaatgtaa tcagtgtgga aaagctttca gcacaaggtc ctctctcact gggcacaata
     1381 gcattcatac aggggagaaa ccttatgaat gtcacgattg tgggaaaacc ttcaggaaga
     1441 gctcctatct gacacagcac gtaagaactc atactggaga aaaaccctat gaatgtaacg
     1501 agtgtgggaa atccttcagc agtagctttt ctcttactgt gcacaagaga atacataccg
     1561 gagagaaacc ctacgagtgc agtgactgtg gaaaagcctt taataatctc tcagctgtga
     1621 agaaacactt aagaactcac actggagaaa aaccctatga atgtaatcat tgtgggaaat
     1681 ccttcacaag taactcctat ctttctgtgc acaagagaat acataataga tggatatgaa
     1741 ttactgcagg aacttctgga ggaaagcact cattgatctt tcatccctaa gatagtttga
     1801 gagagctcac actggatata taagttattt gttgcagcat aacaaatgat ccccgcaaat
     1861 tttgtggctt caaacacgaa atgtttattc tctaacaatt tctacagatc aggaattcaa
     1921 gaacagctta tctctgtagt tacactgcag gatctctcat gcctttactt acaatcaaga
     1981 tgtcagccaa agctatagtc atctaacatc tttactgatg aacagtccac ttccaagatg
     2041 acttattcac atgcctggaa agttgatgtt ggttgttgtc aggggacctt cagtcattac
     2101 catgtaggcc tctttacaag gcccagctcc ttgacaattt ggcaataagt tctcgccaag
     2161 gttagtgatc caagagagga ccaatacaga ggccaaaatg gcttttatga cctatcctca
     2221 ggaggactgc taagctttca cttatttcct attgtgttgg tctcacaaca caccaatcct
     2281 gatacaatgt gagagactgc agaaggtatg aataccagga aacagataac tcagaagcat
     2341 ctgggaaatt tgccatggaa ttaatgaaga aaagccctca gcacatcatc cttctactct
     2401 aatcaatatg aaatagcatt cagtaactcc tattaattca ctctgaagag aaaccttttg
     2461 aggacaatct gtatggtaaa gctctcagct cgaattctca ccttcatggg cccagaagat
     2521 tatgtactga gagaatcctg aagaatggaa cagctgtaga aagccttcag tgctatcagc
     2581 agggattcat gtgacagctc acactaaggg agaaaacctg tgaaggtctc agaaggcttc
     2641 agtgacagtc atcccttaag acacactgga aatcacacaa tggaacaaca ctcagaaatg
     2701 cggaataccc tgcagcaaaa gtgttcacat tactgagcaa actatagtgt ggtattctgc
     2761 agtgactatg ggaaagcctt gaatgttcta tcggttttta agggacttga gaattaattc
     2821 tggagagaat gccccattga acatcatcaa tattggagag ctttctgttt ttctacattt
     2881 gttaggaaac ttgtgagcat tcacactaca gagaaacttg aaatataaag aagaagagaa
     2941 agccttcagt gatgcctctg tgttagggaa aatatggaac ttctccctgg atgcaaaacc
     3001 tatgagtata ttaatattgg aaaatttttc agtgattctt ctctttcttg tatatgagag
     3061 aacttatatg gagaaacccc taggaatgta atcagtgtta ggatgcctca gcctgaactc
     3121 ttcactgagt ggccacaatt ttcactggga acaaaaagta taatcactgt tttgagtgtg
     3181 ggatatcctt tatcagtgtc tcatctgtag attggactgc tggctcatta atttttttag
     3241 tctttttttc ttttaatata aacatttgtg tatagctgtt ccctaaaata aacattaaca
     3301 tatttcataa ttttaatgca atgtatttat tataattaat ttgcttgtta aagacatcca
     3361 cacattgcat attcaaaaag ttatttccaa ataccttctg agtgattcag tttatcataa
     3421 tggaaattag tatttataaa cacatttttc taatgtagtg gtatttttgg cagagtacat
     3481 gagctttatg atactgatta ttttctctct atcttggtat gccaaataat gttggtttct
     3541 ttcccagtgt ccgttctctt cagtttattc gtttaaagaa acaaacatgt tgttcaagtt
     3601 gtctgtgaac aatatcgaaa gttctcaatc ttatagtttt tcctgaagcc caggcgggtt
     3661 ttttcgcact cccctggcaa tgagaagtaa gtcgaagtca ctgtgtggaa catctcctgg
     3721 cttgttctcc tcacatattt tccattcacc tcacccattc tgtctcttgg aaagtggcct
     3781 caaggtctag agtttgaaga gcttcttttt gaccacaatg acagaaacca aagtgcagcc
     3841 aaaaatcaca atgctttggg ctctccagga gcctccgatt ggctgcatct gctctggact
     3901 ccttattctt atacttctta tgtgactaaa agaaacccct aggctgggtg tggtggctca
     3961 cgcctttaat cccagcactt ttgagaggct gaggtgggtg gatcatgagg tcaacagatt
     4021 gagaccatcc tggccaacgt ggtgaaaccc tatctctact aaaagtataa agattagctg
     4081 ggtgtggtgg tgcacacctg tattcccagc tactcgggaa actgagacag gagaattgcc
     4141 tgaacctggg aggtagaggt tgcagtgagc caagatggcg ccagtgcact ccagcctggc
     4201 aacagagcga gactccatct caaaataaac aaataaatat ttttaaaaaa agaaacccct
     4261 aactgattga agccaacatg atctgttgtt tgtttttgag gtggtgttct gttaacttcc
     4321 agcaggatgc agaatctaac tggtaaacct ataaattggt caaattttac ccatgttgtt
     4381 tctttgaaaa caatgtatat tctctaatat ttggatatag ggtatatgaa cattaatgca
     4441 acttaattgt atttccaagt acagtacata tgttcagatt tctttttcta accttattta
     4501 gtgatagagg tgtggtaaac tcttccatta tgtttatgta ttaacactgt aattttgtca
     4561 tttttatata ttttgacgtt atgtaactag atgcatacag gattaggtat tttcttctgt
     4621 attccttttt atgtggagat gatattttta catagcaaag tattgtaatg cattaataat
     4681 aaatggtcaa acatttattt atttatttta gatggagttt cactcttgtc atcaagggtg
     4741 gagtgcaatg gtgcgatctc ggctcactgc aaccttggcc tcccaggttc cagcaattct
     4801 cctgcctcag cctcctgagt agctgggatt acaggcacct gccaccacgc ccag
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.