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NCBI Reference Sequence: XM_054319997.1
FASTA Graphics
LOCUS XM_054319997 4854 bp mRNA linear PRI 26-AUG-2024 DEFINITION PREDICTED: Homo sapiens zinc finger protein 558 (ZNF558), transcript variant X12, mRNA. ACCESSION XM_054319997 VERSION XM_054319997.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060943) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4854 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="19" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..4854 /gene="ZNF558" /note="zinc finger protein 558; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 302 long SRA reads, and 70% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns" /db_xref="GeneID:148156" /db_xref="HGNC:HGNC:26422" CDS 531..1739 /gene="ZNF558" /codon_start=1 /product="zinc finger protein 558 isoform X1" /protein_id="XP_054175972.1" /db_xref="GeneID:148156" /db_xref="HGNC:HGNC:26422" /translation="MAAVILPSTAAPSSLFPASQQKGHTQGGELVNELLTSWLRGLVT FEDVAVEFTQEEWALLDPAQRTLYRDVMLENCRNLASLGCRVNKPSLISQLEQDKKVV TEERGILPSTCPDLETLLKAKWLTPKKNVFRKEQSKGVKTERSHRGVKLNECNQCFKV FSTKSNLTQHKRIHTGEKPYDCSQCGKSFSSRSYLTIHKRIHNGEKPYECNHCGKAFS DPSSLRLHLRIHTGEKPYECNQCFHVFRTSCNLKSHKRIHTGENHHECNQCGKAFSTR SSLTGHNSIHTGEKPYECHDCGKTFRKSSYLTQHVRTHTGEKPYECNECGKSFSSSFS LTVHKRIHTGEKPYECSDCGKAFNNLSAVKKHLRTHTGEKPYECNHCGKSFTSNSYLS VHKRIHNRWI" polyA_site 4854 /gene="ZNF558" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcctgagtag ctgggactac aggggttacc cccagcagtg tgtgagaatg aagagtgtgg 61 gccactgtgt ctctgttgac ctgccagata ggaaatagcg ccagagttgc tgcaatccac 121 gtctccctgg aattcaggag cagcttggct ggaaggctct ggctggaaac ttgcagaagg 181 ctgtcagctg ggtctgcatc atctgaaggc tcaacgggta ccgggggcca ctccatggcc 241 tgcgagtcag agctggccgt cggtgggagg cctcagttcc tctccacata ggcctctcca 301 cagggccact tgagcatctt cccaccatgg caactggtgt cctctagagc aacatccagg 361 agaccaaggc ggaagcagct gtagtgcctt ctaggacctg gtcctgaaag tcacccctgc 421 acccaccccc gctgtctcct cagccatatt ctgctggtca cacagagcgc tgcgggataa 481 aggaggagcg tcctgcttcc cggctgccct gttgctgtcg gagtcacagg atggcggctg 541 tcatcctgcc ctcgactgct gctccgtctt ccctgttccc agcctctcag caaaaaggac 601 acacacaggg cggagagctg gttaatgagc tcctgacaag ctggctacgg ggcttggtaa 661 ccttcgagga tgtggccgtg gagttcaccc aggaggagtg ggcgttgctg gaccctgccc 721 aaaggacact gtacagggat gtgatgctgg agaactgcag gaacctggcc tcactagggt 781 gtcgtgttaa taaacccagt ctgatatccc agttggaaca agacaagaag gtggtgacag 841 aggaaagagg aattctacca agcacctgtc cagatttgga gactctactt aaagccaaat 901 ggttaactcc taagaagaat gttttcagaa aagaacagtc taaaggtgta aaaacggaaa 961 gaagtcatcg tggagtgaaa ctcaatgaat gtaatcagtg ttttaaagtc ttcagcacga 1021 aatctaacct aactcagcac aagagaattc atactggaga aaaaccctat gactgtagtc 1081 aatgtgggaa gtccttcagt agcagatctt accttactat tcataagaga atccataatg 1141 gggagaaacc ctatgaatgc aatcactgtg ggaaagcatt tagtgatccc tcatccctta 1201 gactgcattt gagaattcac actggagaaa aaccctatga atgtaaccag tgttttcacg 1261 ttttccgcac cagttgtaac ctcaaaagcc acaagaggat tcacacgggg gagaatcacc 1321 atgaatgtaa tcagtgtgga aaagctttca gcacaaggtc ctctctcact gggcacaata 1381 gcattcatac aggggagaaa ccttatgaat gtcacgattg tgggaaaacc ttcaggaaga 1441 gctcctatct gacacagcac gtaagaactc atactggaga aaaaccctat gaatgtaacg 1501 agtgtgggaa atccttcagc agtagctttt ctcttactgt gcacaagaga atacataccg 1561 gagagaaacc ctacgagtgc agtgactgtg gaaaagcctt taataatctc tcagctgtga 1621 agaaacactt aagaactcac actggagaaa aaccctatga atgtaatcat tgtgggaaat 1681 ccttcacaag taactcctat ctttctgtgc acaagagaat acataataga tggatatgaa 1741 ttactgcagg aacttctgga ggaaagcact cattgatctt tcatccctaa gatagtttga 1801 gagagctcac actggatata taagttattt gttgcagcat aacaaatgat ccccgcaaat 1861 tttgtggctt caaacacgaa atgtttattc tctaacaatt tctacagatc aggaattcaa 1921 gaacagctta tctctgtagt tacactgcag gatctctcat gcctttactt acaatcaaga 1981 tgtcagccaa agctatagtc atctaacatc tttactgatg aacagtccac ttccaagatg 2041 acttattcac atgcctggaa agttgatgtt ggttgttgtc aggggacctt cagtcattac 2101 catgtaggcc tctttacaag gcccagctcc ttgacaattt ggcaataagt tctcgccaag 2161 gttagtgatc caagagagga ccaatacaga ggccaaaatg gcttttatga cctatcctca 2221 ggaggactgc taagctttca cttatttcct attgtgttgg tctcacaaca caccaatcct 2281 gatacaatgt gagagactgc agaaggtatg aataccagga aacagataac tcagaagcat 2341 ctgggaaatt tgccatggaa ttaatgaaga aaagccctca gcacatcatc cttctactct 2401 aatcaatatg aaatagcatt cagtaactcc tattaattca ctctgaagag aaaccttttg 2461 aggacaatct gtatggtaaa gctctcagct cgaattctca ccttcatggg cccagaagat 2521 tatgtactga gagaatcctg aagaatggaa cagctgtaga aagccttcag tgctatcagc 2581 agggattcat gtgacagctc acactaaggg agaaaacctg tgaaggtctc agaaggcttc 2641 agtgacagtc atcccttaag acacactgga aatcacacaa tggaacaaca ctcagaaatg 2701 cggaataccc tgcagcaaaa gtgttcacat tactgagcaa actatagtgt ggtattctgc 2761 agtgactatg ggaaagcctt gaatgttcta tcggttttta agggacttga gaattaattc 2821 tggagagaat gccccattga acatcatcaa tattggagag ctttctgttt ttctacattt 2881 gttaggaaac ttgtgagcat tcacactaca gagaaacttg aaatataaag aagaagagaa 2941 agccttcagt gatgcctctg tgttagggaa aatatggaac ttctccctgg atgcaaaacc 3001 tatgagtata ttaatattgg aaaatttttc agtgattctt ctctttcttg tatatgagag 3061 aacttatatg gagaaacccc taggaatgta atcagtgtta ggatgcctca gcctgaactc 3121 ttcactgagt ggccacaatt ttcactggga acaaaaagta taatcactgt tttgagtgtg 3181 ggatatcctt tatcagtgtc tcatctgtag attggactgc tggctcatta atttttttag 3241 tctttttttc ttttaatata aacatttgtg tatagctgtt ccctaaaata aacattaaca 3301 tatttcataa ttttaatgca atgtatttat tataattaat ttgcttgtta aagacatcca 3361 cacattgcat attcaaaaag ttatttccaa ataccttctg agtgattcag tttatcataa 3421 tggaaattag tatttataaa cacatttttc taatgtagtg gtatttttgg cagagtacat 3481 gagctttatg atactgatta ttttctctct atcttggtat gccaaataat gttggtttct 3541 ttcccagtgt ccgttctctt cagtttattc gtttaaagaa acaaacatgt tgttcaagtt 3601 gtctgtgaac aatatcgaaa gttctcaatc ttatagtttt tcctgaagcc caggcgggtt 3661 ttttcgcact cccctggcaa tgagaagtaa gtcgaagtca ctgtgtggaa catctcctgg 3721 cttgttctcc tcacatattt tccattcacc tcacccattc tgtctcttgg aaagtggcct 3781 caaggtctag agtttgaaga gcttcttttt gaccacaatg acagaaacca aagtgcagcc 3841 aaaaatcaca atgctttggg ctctccagga gcctccgatt ggctgcatct gctctggact 3901 ccttattctt atacttctta tgtgactaaa agaaacccct aggctgggtg tggtggctca 3961 cgcctttaat cccagcactt ttgagaggct gaggtgggtg gatcatgagg tcaacagatt 4021 gagaccatcc tggccaacgt ggtgaaaccc tatctctact aaaagtataa agattagctg 4081 ggtgtggtgg tgcacacctg tattcccagc tactcgggaa actgagacag gagaattgcc 4141 tgaacctggg aggtagaggt tgcagtgagc caagatggcg ccagtgcact ccagcctggc 4201 aacagagcga gactccatct caaaataaac aaataaatat ttttaaaaaa agaaacccct 4261 aactgattga agccaacatg atctgttgtt tgtttttgag gtggtgttct gttaacttcc 4321 agcaggatgc agaatctaac tggtaaacct ataaattggt caaattttac ccatgttgtt 4381 tctttgaaaa caatgtatat tctctaatat ttggatatag ggtatatgaa cattaatgca 4441 acttaattgt atttccaagt acagtacata tgttcagatt tctttttcta accttattta 4501 gtgatagagg tgtggtaaac tcttccatta tgtttatgta ttaacactgt aattttgtca 4561 tttttatata ttttgacgtt atgtaactag atgcatacag gattaggtat tttcttctgt 4621 attccttttt atgtggagat gatattttta catagcaaag tattgtaatg cattaataat 4681 aaatggtcaa acatttattt atttatttta gatggagttt cactcttgtc atcaagggtg 4741 gagtgcaatg gtgcgatctc ggctcactgc aaccttggcc tcccaggttc cagcaattct 4801 cctgcctcag cctcctgagt agctgggatt acaggcacct gccaccacgc ccag //
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