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PREDICTED: Homo sapiens sphingomyelin phosphodiesterase 4 (SMPD4), transcript variant X18, mRNA

NCBI Reference Sequence: XM_054342875.1

FASTA Graphics 

LOCUS       XM_054342875            3309 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens sphingomyelin phosphodiesterase 4 (SMPD4),
            transcript variant X18, mRNA.
ACCESSION   XM_054342875
VERSION     XM_054342875.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060926) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..3309
                     /gene="SMPD4"
                     /gene_synonym="NEDMABA; NEDMEBA; NET13; NSMASE-3; NSMASE3;
                     SKNY"
                     /note="sphingomyelin phosphodiesterase 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 22 ESTs, 1052 long SRA reads, 3 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:55627"
                     /db_xref="HGNC:HGNC:32949"
                     /db_xref="MIM:610457"
     CDS             623..2146
                     /gene="SMPD4"
                     /gene_synonym="NEDMABA; NEDMEBA; NET13; NSMASE-3; NSMASE3;
                     SKNY"
                     /codon_start=1
                     /product="sphingomyelin phosphodiesterase 4 isoform X18"
                     /protein_id="XP_054198850.1"
                     /db_xref="GeneID:55627"
                     /db_xref="HGNC:HGNC:32949"
                     /db_xref="MIM:610457"
                     /translation="MGLNLPEVPSALPRRSQPSLMGALGSSVSRASLLGKQQVTLPIP
                     CRAAVPRFVQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQ
                     PRCVSEKWAPFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAE
                     MIQKGEQLFLEPELVIPHRQHRLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQ
                     DCKYTPMFGPEARTLVLRLAQLITQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTN
                     GSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKK
                     QLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLS
                     SAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHLLSPVGRRQVAGHTRGPRLS
                     LRFLGSYRTLVSLLLAFFVASLFCVGPLPCTLLLTLGYVLYASAMTLLTERGKLHQP"
ORIGIN      
        1 tgacctcaag tgatctgcct gccttggcct cccaaagtgt tgggattata ggcgtgagcc
       61 accgcacctg gccctttctt ccaaaacaat gcaaattcat tgcccaaaga cttaacaata
      121 cagatagaga aaaatagcca gccacgatgg ctcatgcttg taatcccagc actttgggag
      181 gttgaggcag gcggattgcc tgagctcagg agtttgagac cagcctgggc aacatggcga
      241 aacccctgtc tctacaaata caaaaattag cctggtgtgg tggtgtgtgc gcctgtgttc
      301 ccagctaccc gggaggctga gatgggagga tcccttaagc cctggaggca gaggctgcag
      361 tgagccgaga ccacgacact acagcgcggg tgacagagtg agaccctgtc tcaaaaaaaa
      421 gaaaatgcct cccaccccat agctccatct tcagactcag ccacttatct ctggggagtc
      481 gttcacgcct actgaggagc atgtgttggt ggtgcgcctg ctgctgaagc acctgcacgc
      541 ctttgccaac agcctgaagc cagagcaggc ctcaccctcc gcccactccc acgccaccag
      601 ccccctggag gagttcaaac gaatggggct gaacctcccg gaggtgccca gtgctctccc
      661 ccggcggagc caaccctcac tgatgggagc cctggggtca tctgtgagca gggcctcctt
      721 actgggcaag cagcaggtga ccctccccat cccctgcagg gctgctgtcc cgaggttcgt
      781 ccagcagaaa ctctacctct tcttgcagca ttgctttggc cactggcccc tggacgcatc
      841 gttcagagct gtcctggaga tgtggctgag ctacctgcag ccgtggcggt acgcgcctga
      901 caagcaggct ccgggcagcg actcccagcc ccggtgtgtg tcggagaaat gggcaccctt
      961 tgtccaggag aacctgctga tgtacaccaa gttgtttgtg ggctttctga accgcgcgct
     1021 ccgcacagac ctggtcagcc ccaagcacgc gctcatggtg ttccgagtgg ccaaagtctt
     1081 tgcccagccc aacctggctg agatgattca gaaaggtgag cagctattcc tggagccaga
     1141 gctggtcatc ccccaccgcc agcaccgact cttcacggcc cccacattca ctgggagctt
     1201 cctgtcaccc tggccaccag cggtcactga tgcctccttc aaggtgaaga gccacgtcta
     1261 cagcctggag ggccaggact gcaagtacac cccgatgttt gggcccgagg cccgcaccct
     1321 ggtcctgcgc ctcgctcagc tcatcacaca ggccaaacac acagccaagt ccatctccga
     1381 ccagtgtgcg gagagcccgg ctggccactc cttcctctca tggctgggct ttagctccat
     1441 ggacaccaat ggctcctaca cagccaacga cctggacgag atggggcaag acagtgtccg
     1501 gaagacagat gaatacctgg agaaggccct ggagtacctg cgccagatat tccggctcag
     1561 cgaagcgcag ctcaggcagt tcacactcgc cttgggcacc acccaggatg agaatggaaa
     1621 aaagcaactc cccgactgca tcgtgggtga ggacggactc atccttacgc ccctggggcg
     1681 gtaccagatc atcaatgggc tgcgaaggtt tgaaattgag taccaggggg acccggagct
     1741 gcagcccatc cggagctatg agatcgccag cttggtccgc acactcttta ggctgtcgtc
     1801 tgccatcaac cacagatttg caggacagat ggcggctctg tgttcccggg atgacttcct
     1861 cggcagcttc tgtcgctacc acctcacaga acctgggctg gccagcaggc acctgctgag
     1921 ccctgtgggg cggaggcagg tggccggcca cacccgcggc cccaggctca gcctgcgctt
     1981 cctgggcagt taccggacgc tggtctcgct gctgctggcc ttcttcgtgg cctctctgtt
     2041 ctgcgtcggg cccctcccat gcacgctgct gctcaccctg ggctatgtcc tctacgcctc
     2101 tgccatgaca ctgctgaccg agcgggggaa gctgcaccag ccctgaaggt gtcagctgcc
     2161 ttcagagcag gctggaggga tttgccacac agccccaccc ttgggctgag aggacctggg
     2221 aagcccctcc aggagggaac acggtcatcc tcgggcttct ggagcggggt tcctgcagcc
     2281 gcagaggcat ctggaggaaa cgcaaccaag aaaggaaggc aggtgggccc cagcaaagga
     2341 gtagctgcca gggctcaaca gctacgctct gtgacagcgc agagctcagc ggcggccttt
     2401 ccctccctcc gccaaggact cacggccaag ccagctctcg gggccttttt tccactgccc
     2461 atttggctac tctgctgcac caagcttggg agccagcctg ccaacagcca cctgggcctg
     2521 gcctccccac tggctggcct tgaggttggc agagtgggtt gtggcgcttc ctctctctgt
     2581 gtgggaccag gacagtggct taagtctcca ctccaggaaa gaatcaaagt ttctagagtt
     2641 gtgagaaaac cagagagtgg ctgtcctgat tcttcactgt gaggggcgtt cttcatgttc
     2701 tcccagctgt tccaagactg ggccgtagaa ttccatgttt caggagccta agaccctccc
     2761 agagcccagg ggcttcaccg cagaccccaa gccattgagc acatcaccca aagcagtggc
     2821 caacatcgcg gacccctgtg ccttgtcaca gatgggtgct ggtcctcagg cgttggggac
     2881 actgctgggt cgatggggtc ggattctgcc agtttctgct ctgcagccaa agatggtcag
     2941 aagcattgtc acttcagtaa catcaagtgc tcaaagacat ggcaaccgtt cagtggtact
     3001 taagtattca aaatatacaa ctacagattc tctgacagaa accagcacgg ggtcttcacc
     3061 ttcattcacc ccacaggcga catgcgaggg agaacagcat ctcagtggtg atttccaaac
     3121 caagcctttg ttttcggtgt ggggttttgg gggtttgctt taatgttttt gaaattgtaa
     3181 atgttgggct ttgtattttg atgtaaactg agcataatgg cattttaggg cctgtgacca
     3241 aaaatgaagc ttgtaacgac catggatctg aataaacatg tccttgcttc tgagtcttct
     3301 ggcacctgg
//
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