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PREDICTED: Homo sapiens forkhead box R1 (FOXR1), transcript variant X1, mRNA

NCBI Reference Sequence: XM_054368476.1

FASTA Graphics 

LOCUS       XM_054368476            1149 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens forkhead box R1 (FOXR1), transcript variant
            X1, mRNA.
ACCESSION   XM_054368476
VERSION     XM_054368476.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060935) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..1149
                     /gene="FOXR1"
                     /gene_synonym="DLNB13; FOXN5"
                     /note="forkhead box R1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:283150"
                     /db_xref="HGNC:HGNC:29980"
                     /db_xref="MIM:615755"
     CDS             172..1065
                     /gene="FOXR1"
                     /gene_synonym="DLNB13; FOXN5"
                     /codon_start=1
                     /product="forkhead box protein R1 isoform X1"
                     /protein_id="XP_054224451.1"
                     /db_xref="GeneID:283150"
                     /db_xref="HGNC:HGNC:29980"
                     /db_xref="MIM:615755"
                     /translation="MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDK
                     DGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAG
                     VESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPLQSRRL
                     RQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWK
                     NTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESI
                     QQCMSQPGVKTCCAWAQGEET"
ORIGIN      
        1 gcatttgaga aggcgcctgt gagggtcgct cctcagccgc cgcgctccca ctccgcgtcc
       61 ccactccgcg ccgccgcgcc tctgccagcc ccgaaggtgg acgtgaagct ccaacacctc
      121 gacttctggg cccgcctcca tggccaggtc ccgggactgc tggactggga catggggaac
      181 gagctctttc tggccttcac cacatctcac ctccccttag cggagcagaa acttgccagg
      241 tataaactcc gaattgttaa gccaccaaaa ttacccctag agaaaaaacc caaccctgat
      301 aaggatggtc cagattatga gcccaacctc tggatgtggg taaatcccaa cattgtgtat
      361 ccccctggaa agctggaggt ctcaggacgt aggaagaggg aggacctgac aagcacactc
      421 ccctcctctc agccacccca gaaggaggaa gatgccagct gctcagaggc cgcaggggtg
      481 gaatcactgt cccagtcctc cagcaagcgg tctccccctc ggaagcggtt tgccttttcc
      541 cccagcacct gggagctcac agaagaggag gaggctgagg accaggaaga cagctcctct
      601 atggctctcc catcccctca caaaagggcc cccctccaga gtcggaggct tcggcaagcc
      661 agcagccagg cggggaggct ctggtcccgg ccccctctca attacttcca cctaattgcc
      721 ctggcattaa gaaacagttc cccctgtggc ctcaacgtgc aacagatcta cagtttcact
      781 cgaaagcact tccccttttt ccggacggcc ccggaaggct ggaagaatac tgtccgtcac
      841 aatctctgtt ttcgagacag ctttgagaaa gtgcctgtca gcatgcaggg cggggccagc
      901 acacggcctc gatcttgcct ctggaagttg accgaggagg gacaccgccg ctttgcggag
      961 gaggcccgcg ccttggcttc cactcggcta gaaagtatcc aacagtgcat gagccagcca
     1021 ggtgtgaaga cttgttgtgc gtgggcccaa ggggaagaga cctgaggatc ctgacccaag
     1081 gccaagtgtg gaagcctggg tcacaccgtg ggggtggggg aatgcatctt ctataggaaa
     1141 cagggagat
//
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