LOCUS BC005621 1295 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus LIM and senescent cell antigen-like domains 1, mRNA
(cDNA clone MGC:11585 IMAGE:3711611), complete cds.
ACCESSION BC005621
VERSION BC005621.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1295)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1295)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Jeffrey Green M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 17 Row: o Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860508.
FEATURES Location/Qualifiers
source 1..1295
/organism="Mus musculus"
/mol_type="mRNA"
/strain="FVB/N"
/db_xref="taxon:10090"
/clone="MGC:11585 IMAGE:3711611"
/tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating
ductal carcinoma. 5 month old virgin mouse."
/clone_lib="NCI_CGAP_Mam6"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1295
/gene="Lims1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/db_xref="GeneID:110829"
/db_xref="MGI:MGI:1195263"
CDS 46..1059
/gene="Lims1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/codon_start=1
/product="LIM and senescent cell antigen-like domains 1"
/protein_id="AAH05621.1"
/db_xref="GeneID:110829"
/db_xref="MGI:MGI:1195263"
/translation="MLGVAAGMTNSNMANALASATCERCKGGFAPAEKIVNSNGELYH
EQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLI
FKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVN
AMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVV
SALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLSETL
GRK"
ORIGIN
1 gcggcgggga ctgaggcaca gactgacccg gcgtggaccg cggagatgct gggcgtggcg
61 gccggaatga ccaacagcaa catggccaat gccttggcca gtgccacgtg tgagcgctgc
121 aagggaggct ttgcgcctgc tgagaagatc gtgaacagta atggtgagct gtaccacgaa
181 cagtgcttcg tatgtgctca gtgcttccag cagttcccag aaggactctt ttatgagttt
241 gaaggaagga agtactgtga gcatgatttc caaatgctct ttgctccctg ctgccaccaa
301 tgtggtgaat tcatcattgg cagggttatc aaagccatga acaacagctg gcatcctgag
361 tgcttccgat gtgacctctg ccaggaagtg ctggcagaca tagggtttgt caagaatgct
421 ggcagacacc tatgtcgccc atgtcataat cgtgaaaaag ccagaggcct tggaaaatac
481 atctgccaga aatgccatgc catcattgat gaacagcctc tgatcttcaa gaacgaccct
541 taccatccag accacttcaa ctgtgccaac tgcgggaagg agctaactgc tgatgctcgg
601 gagctgaaag gggagctata ctgtctgcca tgccatgata agatgggggt ccctatctgt
661 ggcgcctgca ggaggcccat tgaagggcga gtagtgaatg ccatgggcaa gcaatggcat
721 gtggagcatt ttgtttgtgc caaatgtgaa aaaccatttc ttgggcatcg ccattatgag
781 aggaagggct tggcctactg tgaaactcac tataatcagc tgtttggtga tgtttgtttc
841 cattgcaacc gtgtcataga aggtgatgtg gtctctgctc tcaacaaggc ctggtgtgtg
901 agctgctttg cctgctccac ctgcaatacc aaactcacac tcaagaataa atttgtggaa
961 tttgacatga agccagtctg taagaagtgc tacgagaaat ttcctttgga gctgaagaaa
1021 agacttaaga aactatctga gaccttagga aggaaataac ttttggtgtc ttttttctct
1081 ctcttctaat caatgttact taacctgatc tacccttgct taaaactatg tcagagcatt
1141 agaatggttt tcttcatttc ccttttctca tttaaaaacg aaagaaaatg tttatttcta
1201 tgtaaaacac agatgaaatc aggactttca tttctttagc catattagtc tgtaggcatt
1261 aaaagtatat aaccaaaaac aaaaaaaaaa aaaaa
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