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Rattus norvegicus V-set and transmembrane domain containing 2A (Vstm2a), mRNA

NCBI Reference Sequence: NM_001432989.1

FASTA Graphics 

LOCUS       NM_001432989            3280 bp    mRNA    linear   ROD 26-DEC-2024
DEFINITION  Rattus norvegicus V-set and transmembrane domain containing 2A
            (Vstm2a), transcript variant 2, mRNA.
ACCESSION   NM_001432989 XM_039092863
VERSION     NM_001432989.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Secco,B., Camire,E., Briere,M.A., Caron,A., Billong,A., Gelinas,Y.,
            Lemay,A.M., Tharp,K.M., Lee,P.L., Gobeil,S., Guimond,J.V.,
            Patey,N., Guertin,D.A., Stahl,A., Haddad,E., Marsolais,D.,
            Bosse,Y., Birsoy,K. and Laplante,M.
  TITLE     Amplification of Adipogenic Commitment by VSTM2A
  JOURNAL   Cell Rep 18 (1), 93-106 (2017)
   PUBMED   28052263
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Aug 5, 2024 this sequence version replaced XM_039092863.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1021635.1,
                                           SRR26643298.55705.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-361               JAXUCZ010000014.1  94873333-94873693
            362-528             JAXUCZ010000014.1  94875487-94875653
            529-579             JAXUCZ010000014.1  94876912-94876962
            580-916             JAXUCZ010000014.1  94878404-94878740
            917-3280            JAXUCZ010000014.1  94898577-94900940
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..3280
                     /gene="Vstm2a"
                     /note="V-set and transmembrane domain containing 2A"
                     /db_xref="GeneID:689106"
                     /db_xref="RGD:1596197"
     exon            1..361
                     /gene="Vstm2a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    202..204
                     /gene="Vstm2a"
                     /note="upstream in-frame stop codon"
     CDS             283..993
                     /gene="Vstm2a"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; V-set and transmembrane domain-containing
                     protein 2A-like"
                     /codon_start=1
                     /product="V-set and transmembrane domain containing 2A
                     isoform 2 precursor"
                     /protein_id="NP_001419918.1"
                     /db_xref="GeneID:689106"
                     /db_xref="RGD:1596197"
                     /translation="MMGIFLASVGFMFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNV
                     EMSCAFQSGSASVYLEIQWWFLRGPEDLEQGTEAAGSQVELLPDRDPDNDGTKISTVK
                     VQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAF
                     EASPMWLQDTKPRKNASSVVPSSVHSSANQRMHSTSSPQAVAKIPKQSPQSGARIATS
                     HGLSVLLLVCGFVKGALL"
     sig_peptide     283..354
                     /gene="Vstm2a"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
     exon            362..528
                     /gene="Vstm2a"
                     /inference="alignment:Splign:2.1.0"
     exon            529..579
                     /gene="Vstm2a"
                     /inference="alignment:Splign:2.1.0"
     exon            580..916
                     /gene="Vstm2a"
                     /inference="alignment:Splign:2.1.0"
     exon            917..3280
                     /gene="Vstm2a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gactgacgtg ggacgagctg ccaggtagcg gaagcagcca gccgccggag gagacacttc
       61 acggcgtggc agccctggtc tgcgcctgaa gcctccggat cgcagccagc tcggtccaac
      121 cctcgccagt cgcaatcccc tgtgcccaag ccactctttg ctgcgagtgg cagcatgcat
      181 gcagtatcgc gccctgggct ctgagagcag cccgcggaac gcttgcctgc ctgtctaggt
      241 tttggggctc tgggctacac ggatgtgccc tattcccttg gcatgatggg gatctttttg
      301 gcgtctgttg gatttatgtt cttttccgtg ttatatgtac aacaagggct ttcttctcaa
      361 gcaaaattta ccgagtttcc tcgaaacgtg actgcgaccg aagggcaaaa tgtggagatg
      421 tcctgcgctt tccaaagcgg ctctgcttcg gtgtacctgg agatccagtg gtggttcctt
      481 cggggaccag aggacctgga gcaagggaca gaggcggcag gctcgcaggt ggagctctta
      541 cccgacagag acccggacaa cgacgggacc aagattagta cagtgaaagt ccaaggcaat
      601 gacatctccc acaagcttca gatttccaaa gtgagaaaaa aggacgaagg tttatatgag
      661 tgcagggtga ctgatgctaa ctacggggag cttcaggaac acaaggccca ggcctacctg
      721 aaagtcaatg ccaacagcca tgctcggcgg atgcaggcct ttgaagcctc gcctatgtgg
      781 ctacaagata cgaagcctcg aaagaatgca tcctcagtgg ttcccagcag cgtccacagc
      841 tctgccaacc aacgaatgca ctccacctcc agccctcaag cggtagccaa aatccccaag
      901 caaagtccac aatcaggtgc gaggatagct acaagccatg gactttctgt cctgcttctt
      961 gtttgtggct ttgtgaaggg tgctttgctt taatctaaag tgctgacttt tttccaatat
     1021 cactttctct tcttaaagca aagagcaaat cgcctgtaaa atctacggag cggacagcaa
     1081 agttgaccct aaactccaag caccattctg cacccctgta ctctagttat ctacacaagg
     1141 agcatcagct tccggaagca taagtgaaga cattatcaca cgctttattg ataataattt
     1201 tctttgggaa agtggctcat cttttgtttc aagagaattg atgtgaagtg ataggacatt
     1261 ttctaattgc gagatcgatt tttttttctc ttttatttca acaaataaaa cctgaatttc
     1321 actgactgct caggagttgg cctggacgac atgagtatcc caaatatctc catggattcc
     1381 accaatttcc taccaaggga cacataatct gcaagaaaca aagatggaaa tcctgagaaa
     1441 cgaaaactgc tttcaaacag caccccagct gggaacaaaa caaaaagcaa aagactgaac
     1501 acgtcaaatc aacagcagac aacttgattt tatacatgga ataatcaaag aaagtcctct
     1561 ctcacttcct ctttgccccg tggaattttt cttggagttt cccttctcct tgtttgccgt
     1621 tttttgttca atggtagcaa gtgccaatta cggccaatcc ctgtcaatcc tgggaggttt
     1681 atattcgtac atagtgtggt atatttcaat gtattttaat tcattttgca atttctgtat
     1741 atgcaaacct ggcaaattct gtaaattgct tatagtacgt gtgatgtgac ttcaaggtag
     1801 ataggctatg atgctcatgc aagctgactt tcttcatcct atatacaaat atatacatga
     1861 gcatatatta ggctaccaac ttcttttccc aaagcctttg ttttttcatt tgtaactcat
     1921 gtattgtgtg aattttgtag cgtatttctc tgtcccactg atttgacagc tacagtttgt
     1981 ctccgttgtc cttccttctg gaaatattta aaattgtgta tgtctctgat aaatgagtta
     2041 atttttgctc tgtgtatgct atgttggaat ttgctgtgtt cttttacaca tgtatttatt
     2101 aaggtctagg gatcttgagt ctgaggaatg cacacctagt ttttgacaga tcccctcgtg
     2161 ttatcaatat tctatctcag agaaaaagaa aggccaagtg tgagagctaa gaagacattt
     2221 tgactcccca agatcctgga agagcacttc acgctctgac taaataatgc tgcttccttt
     2281 gttcttcaag actttttttc atagctttgt cattctgtta tttgctgcta attatatttt
     2341 aatgtctact aattaaaaat taaaatgtga ttgttggctg aatacaatat gcaaatgact
     2401 gcaaagccca tactgaagaa gataggtgtt taatcttcac tcaataatta taattttaaa
     2461 tattccatcg ttattttttg actttatgat attttgttta ggcctgttct aattacatct
     2521 ttctctggca aagaaagata gaacaatcaa tgaattccct cttagtatgg aagggttgtg
     2581 gcttaagaaa gaacacatcc agatagtctt ccagagataa taatttattt tcattataaa
     2641 accagaaacc atatatgtag gaatggtcca ctcccaatgt aaggccctaa attgtagctt
     2701 gaaggaaatg aatttatttg cttttttatg gtaaacgact ggactctgcc atgcacttat
     2761 aagcaatgtg aatattttca taaagttctt gacattctcc tttaagaaat attgttttat
     2821 gctaaatctt tccttgccat ttttcttgtt tcatttgatt cattgtttca ttctaataaa
     2881 gaaaataaag gtttaattat actttattaa catacaaatg tattttcatt ctaaagatat
     2941 ttagatattt ctaaatatct gaaagttgta taaaatgatg atggataaat attatctgtt
     3001 cagtctcttt aagctttaaa aatcccatac attacagtat atattagtat actgatttaa
     3061 agtcaatcaa actgggaaaa cacatcttgt attatacttt tactcaatgt ccaggtaatg
     3121 gtatcagcta attttacagc aagtcaaact tgtaccctta tcataaatgt tcaccatgct
     3181 tgtaataaaa ggacatatgc tagtttggga agaatgctca ctagattcat tgtatcagtg
     3241 tccaaaataa taaagacctg tttatcactg tgtgaccaaa
//
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