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NCBI Reference Sequence: NM_001432989.1
FASTA Graphics
LOCUS NM_001432989 3280 bp mRNA linear ROD 26-DEC-2024 DEFINITION Rattus norvegicus V-set and transmembrane domain containing 2A (Vstm2a), transcript variant 2, mRNA. ACCESSION NM_001432989 XM_039092863 VERSION NM_001432989.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3280) AUTHORS Secco,B., Camire,E., Briere,M.A., Caron,A., Billong,A., Gelinas,Y., Lemay,A.M., Tharp,K.M., Lee,P.L., Gobeil,S., Guimond,J.V., Patey,N., Guertin,D.A., Stahl,A., Haddad,E., Marsolais,D., Bosse,Y., Birsoy,K. and Laplante,M. TITLE Amplification of Adipogenic Commitment by VSTM2A JOURNAL Cell Rep 18 (1), 93-106 (2017) PUBMED 28052263 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ010000014.1. On Aug 5, 2024 this sequence version replaced XM_039092863.2. ##Evidence-Data-START## Transcript exon combination :: SRR26360194.1021635.1, SRR26643298.55705.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760393, SAMEA5760433 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-361 JAXUCZ010000014.1 94873333-94873693 362-528 JAXUCZ010000014.1 94875487-94875653 529-579 JAXUCZ010000014.1 94876912-94876962 580-916 JAXUCZ010000014.1 94878404-94878740 917-3280 JAXUCZ010000014.1 94898577-94900940 FEATURES Location/Qualifiers source 1..3280 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="14" /map="14q22" gene 1..3280 /gene="Vstm2a" /note="V-set and transmembrane domain containing 2A" /db_xref="GeneID:689106" /db_xref="RGD:1596197" exon 1..361 /gene="Vstm2a" /inference="alignment:Splign:2.1.0" misc_feature 202..204 /gene="Vstm2a" /note="upstream in-frame stop codon" CDS 283..993 /gene="Vstm2a" /note="isoform 2 precursor is encoded by transcript variant 2; V-set and transmembrane domain-containing protein 2A-like" /codon_start=1 /product="V-set and transmembrane domain containing 2A isoform 2 precursor" /protein_id="NP_001419918.1" /db_xref="GeneID:689106" /db_xref="RGD:1596197" /translation="MMGIFLASVGFMFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNV EMSCAFQSGSASVYLEIQWWFLRGPEDLEQGTEAAGSQVELLPDRDPDNDGTKISTVK VQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAF EASPMWLQDTKPRKNASSVVPSSVHSSANQRMHSTSSPQAVAKIPKQSPQSGARIATS HGLSVLLLVCGFVKGALL" sig_peptide 283..354 /gene="Vstm2a" /inference="COORDINATES: ab initio prediction:SignalP:6.0" exon 362..528 /gene="Vstm2a" /inference="alignment:Splign:2.1.0" exon 529..579 /gene="Vstm2a" /inference="alignment:Splign:2.1.0" exon 580..916 /gene="Vstm2a" /inference="alignment:Splign:2.1.0" exon 917..3280 /gene="Vstm2a" /inference="alignment:Splign:2.1.0" ORIGIN 1 gactgacgtg ggacgagctg ccaggtagcg gaagcagcca gccgccggag gagacacttc 61 acggcgtggc agccctggtc tgcgcctgaa gcctccggat cgcagccagc tcggtccaac 121 cctcgccagt cgcaatcccc tgtgcccaag ccactctttg ctgcgagtgg cagcatgcat 181 gcagtatcgc gccctgggct ctgagagcag cccgcggaac gcttgcctgc ctgtctaggt 241 tttggggctc tgggctacac ggatgtgccc tattcccttg gcatgatggg gatctttttg 301 gcgtctgttg gatttatgtt cttttccgtg ttatatgtac aacaagggct ttcttctcaa 361 gcaaaattta ccgagtttcc tcgaaacgtg actgcgaccg aagggcaaaa tgtggagatg 421 tcctgcgctt tccaaagcgg ctctgcttcg gtgtacctgg agatccagtg gtggttcctt 481 cggggaccag aggacctgga gcaagggaca gaggcggcag gctcgcaggt ggagctctta 541 cccgacagag acccggacaa cgacgggacc aagattagta cagtgaaagt ccaaggcaat 601 gacatctccc acaagcttca gatttccaaa gtgagaaaaa aggacgaagg tttatatgag 661 tgcagggtga ctgatgctaa ctacggggag cttcaggaac acaaggccca ggcctacctg 721 aaagtcaatg ccaacagcca tgctcggcgg atgcaggcct ttgaagcctc gcctatgtgg 781 ctacaagata cgaagcctcg aaagaatgca tcctcagtgg ttcccagcag cgtccacagc 841 tctgccaacc aacgaatgca ctccacctcc agccctcaag cggtagccaa aatccccaag 901 caaagtccac aatcaggtgc gaggatagct acaagccatg gactttctgt cctgcttctt 961 gtttgtggct ttgtgaaggg tgctttgctt taatctaaag tgctgacttt tttccaatat 1021 cactttctct tcttaaagca aagagcaaat cgcctgtaaa atctacggag cggacagcaa 1081 agttgaccct aaactccaag caccattctg cacccctgta ctctagttat ctacacaagg 1141 agcatcagct tccggaagca taagtgaaga cattatcaca cgctttattg ataataattt 1201 tctttgggaa agtggctcat cttttgtttc aagagaattg atgtgaagtg ataggacatt 1261 ttctaattgc gagatcgatt tttttttctc ttttatttca acaaataaaa cctgaatttc 1321 actgactgct caggagttgg cctggacgac atgagtatcc caaatatctc catggattcc 1381 accaatttcc taccaaggga cacataatct gcaagaaaca aagatggaaa tcctgagaaa 1441 cgaaaactgc tttcaaacag caccccagct gggaacaaaa caaaaagcaa aagactgaac 1501 acgtcaaatc aacagcagac aacttgattt tatacatgga ataatcaaag aaagtcctct 1561 ctcacttcct ctttgccccg tggaattttt cttggagttt cccttctcct tgtttgccgt 1621 tttttgttca atggtagcaa gtgccaatta cggccaatcc ctgtcaatcc tgggaggttt 1681 atattcgtac atagtgtggt atatttcaat gtattttaat tcattttgca atttctgtat 1741 atgcaaacct ggcaaattct gtaaattgct tatagtacgt gtgatgtgac ttcaaggtag 1801 ataggctatg atgctcatgc aagctgactt tcttcatcct atatacaaat atatacatga 1861 gcatatatta ggctaccaac ttcttttccc aaagcctttg ttttttcatt tgtaactcat 1921 gtattgtgtg aattttgtag cgtatttctc tgtcccactg atttgacagc tacagtttgt 1981 ctccgttgtc cttccttctg gaaatattta aaattgtgta tgtctctgat aaatgagtta 2041 atttttgctc tgtgtatgct atgttggaat ttgctgtgtt cttttacaca tgtatttatt 2101 aaggtctagg gatcttgagt ctgaggaatg cacacctagt ttttgacaga tcccctcgtg 2161 ttatcaatat tctatctcag agaaaaagaa aggccaagtg tgagagctaa gaagacattt 2221 tgactcccca agatcctgga agagcacttc acgctctgac taaataatgc tgcttccttt 2281 gttcttcaag actttttttc atagctttgt cattctgtta tttgctgcta attatatttt 2341 aatgtctact aattaaaaat taaaatgtga ttgttggctg aatacaatat gcaaatgact 2401 gcaaagccca tactgaagaa gataggtgtt taatcttcac tcaataatta taattttaaa 2461 tattccatcg ttattttttg actttatgat attttgttta ggcctgttct aattacatct 2521 ttctctggca aagaaagata gaacaatcaa tgaattccct cttagtatgg aagggttgtg 2581 gcttaagaaa gaacacatcc agatagtctt ccagagataa taatttattt tcattataaa 2641 accagaaacc atatatgtag gaatggtcca ctcccaatgt aaggccctaa attgtagctt 2701 gaaggaaatg aatttatttg cttttttatg gtaaacgact ggactctgcc atgcacttat 2761 aagcaatgtg aatattttca taaagttctt gacattctcc tttaagaaat attgttttat 2821 gctaaatctt tccttgccat ttttcttgtt tcatttgatt cattgtttca ttctaataaa 2881 gaaaataaag gtttaattat actttattaa catacaaatg tattttcatt ctaaagatat 2941 ttagatattt ctaaatatct gaaagttgta taaaatgatg atggataaat attatctgtt 3001 cagtctcttt aagctttaaa aatcccatac attacagtat atattagtat actgatttaa 3061 agtcaatcaa actgggaaaa cacatcttgt attatacttt tactcaatgt ccaggtaatg 3121 gtatcagcta attttacagc aagtcaaact tgtaccctta tcataaatgt tcaccatgct 3181 tgtaataaaa ggacatatgc tagtttggga agaatgctca ctagattcat tgtatcagtg 3241 tccaaaataa taaagacctg tttatcactg tgtgaccaaa //
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