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Items: 1 to 20 of 57

1.
The in-silico study of the structural changes in the Arthrobacter globiformis choline oxidase induced by high temperature
Sonia Kaushik, Rashmi Rameshwari, Shilpa S. Chapadgaonkar
J Genet Eng Biotechnol. 2024 Mar; 22(1): 100348. Published online 2024 Jan 22. doi: 10.1016/j.jgeb.2023.100348
PMCID:
PMC10980864
ArticlePDF–5.0M
2.
aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow
Zoé Pochon, Nora Bergfeldt, Emrah Kırdök, Mário Vicente, Thijessen Naidoo, Tom van der Valk, N. Ezgi Altınışık, Maja Krzewińska, Love Dalén, Anders Götherström, Claudio Mirabello, Per Unneberg, Nikolay Oskolkov
Genome Biol. 2023; 24: 242. Published online 2023 Oct 23. doi: 10.1186/s13059-023-03083-9
PMCID:
PMC10591440
ArticlePDF–3.0M
3.
Mechanistic insights into sulfur source-driven physiological responses and metabolic reorganization in the fuel-biodesulfurizing Rhodococcus qingshengii IGTS8
Julie Zumsteg, Aurélie Hirschler, Christine Carapito, Loïc Maurer, Claire Villette, Dimitri Heintz, Christiane Dahl, Ashraf El Nayal, Vartul Sangal, Huda Mahmoud, Alain Van Dorsselaer, Wael Ismail
Appl Environ Microbiol. 2023 Sep; 89(9): e00826-23. Prepublished online 2023 Sep 1. Published online 2023 Sep 28. doi: 10.1128/aem.00826-23
PMCID:
PMC10537767
ArticlePDF–6.4M
4.
Bacterial–fungal interactions promote parallel evolution of global transcriptional regulators in a widespread Staphylococcus species
Casey M. Cosetta, Brittany Niccum, Nick Kamkari, Michael Dente, Matthew Podniesinski, Benjamin E. Wolfe
ISME J. 2023 Sep; 17(9): 1504–1516. Published online 2023 Jul 31. doi: 10.1038/s41396-023-01462-5
PMCID:
PMC10432416
ArticlePDF–3.9M
5.
Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations
Rubing Du, Wu Xiong, Lei Xu, Yan Xu, Qun Wu
Microbiome. 2023; 11: 115. Published online 2023 May 20. doi: 10.1186/s40168-023-01536-8
PMCID:
PMC10199516
ArticlePDF–3.9M
6.
LaeA-Regulated Fungal Traits Mediate Bacterial Community Assembly
Joanna Tannous, Casey M. Cosetta, Milton T. Drott, Tomás A. Rush, Paul E. Abraham, Richard J. Giannone, Nancy P. Keller, Benjamin E. Wolfe
mBio. 2023 May-Jun; 14(3): e00769-23. Published online 2023 May 9. doi: 10.1128/mbio.00769-23
PMCID:
PMC10294623
ArticlePDF–3.2M
7.
Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses
Justin Falardeau, Erkan Yildiz, Yifan Yan, Simone D. Castellarin, Siyun Wang
Appl Environ Microbiol. 2023 Apr; 89(4): e02004-22. Published online 2023 Mar 28. doi: 10.1128/aem.02004-22
PMCID:
PMC10132104
ArticlePDF–2.7M
8.
Causality Verification for the Correlation between the Presence of Nonstarter Bacteria and Flavor Characteristics in Soft-Type Ripened Cheeses
Ryosuke Unno, Toshihiro Suzuki, Yumika Osaki, Minenosuke Matsutani, Morio Ishikawa
Microbiol Spectr. 2022 Nov-Dec; 10(6): e02894-22. Published online 2022 Nov 10. doi: 10.1128/spectrum.02894-22
PMCID:
PMC9769828
ArticlePDF–2.2M
9.
Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities
Vincent Somerville, Thibault Schowing, Hélène Chabas, Remo S. Schmidt, Ueli von Ah, Rémy Bruggmann, Philipp Engel
Microbiome. 2022; 10: 137. Published online 2022 Aug 27. doi: 10.1186/s40168-022-01328-6
PMCID:
PMC9419375
ArticlePDF–3.5M
10.
A Computational Model for the PLP-Dependent Enzyme Methionine γ-Lyase
Xingyu Chen, Pierre Briozzo, David Machover, Thomas Simonson
Front Mol Biosci. 2022; 9: 886358. Published online 2022 Apr 26. doi: 10.3389/fmolb.2022.886358
PMCID:
PMC9087591
ArticlePDF–2.4M
11.
Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening
Narciso Martín Quijada, Monika Dzieciol, Stephan Schmitz-Esser, Martin Wagner, Evelyne Selberherr
Front Microbiol. 2022; 13: 813480. Published online 2022 Mar 1. doi: 10.3389/fmicb.2022.813480
PMCID:
PMC8921697
ArticlePDF–5.4M
12.
Yeasts in different types of cheese
Thomas Bintsis
AIMS Microbiol. 2021; 7(4): 447–470. Published online 2021 Nov 8. doi: 10.3934/microbiol.2021027
PMCID:
PMC8712537
ArticlePDF–384K
13.
Composition, Succession, and Source Tracking of Microbial Communities throughout the Traditional Production of a Farmstead Cheese
Lang Sun, Dennis J. D’Amico
mSystems. 2021 Sep-Oct; 6(5): e00830-21. Published online 2021 Sep 28. doi: 10.1128/mSystems.00830-21
PMCID:
PMC8547439
ArticlePDF–3.5M
14.
A coupled enzyme assay for detection of selenium-binding protein 1 (SELENBP1) methanethiol oxidase (MTO) activity in mature enterocytes
Thilo Magnus Philipp, Andreas Will, Hannes Richter, Patrick Rainer Winterhalter, Georg Pohnert, Holger Steinbrenner, Lars-Oliver Klotz
Redox Biol. 2021 Jul; 43: 101972. Published online 2021 Apr 15. doi: 10.1016/j.redox.2021.101972
PMCID:
PMC8099554
ArticlePDF–3.3M
15.
Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysis
Alexandre Zanatta Vieira, Roberto Tadeu Raittz, Helisson Faoro
Microb Genom. 2021; 7(4): 000563. Published online 2021 Apr 13. doi: 10.1099/mgen.0.000563
PMCID:
PMC8208679
ArticlePDF–7.2M
16.
Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria
Asimenia Gavriilidou, Thomas Andrew Mackenzie, Pilar Sánchez, José Ruben Tormo, Colin Ingham, Hauke Smidt, Detmer Sipkema
Mar Drugs. 2021 Feb; 19(2): 75. Published online 2021 Jan 30. doi: 10.3390/md19020075
PMCID:
PMC7912018
ArticlePDF–855K
17.
High Throughput Sequencing Technologies as a New Toolbox for Deep Analysis, Characterization and Potentially Authentication of Protection Designation of Origin Cheeses?
Elena Kamilari, Marios Tomazou, Athos Antoniades, Dimitrios Tsaltas
Int J Food Sci. 2019; 2019: 5837301. Published online 2019 Nov 20. doi: 10.1155/2019/5837301
PMCID:
PMC6925717
ArticlePDF–588K
18.
Temporal and spatial variation in bacterial communities of “Jonagold” apple (Malus x domestica Borkh.) and “Conference” pear (Pyrus communis L.) floral nectar
Jolien Smessaert, Maarten Van Geel, Christel Verreth, Sam Crauwels, Olivier Honnay, Wannes Keulemans, Bart Lievens
Microbiologyopen. 2019 Dec; 8(12): e918. Published online 2019 Aug 22. doi: 10.1002/mbo3.918
PMCID:
PMC6925153
ArticlePDF–1.9M
19.
Transcription Profiling Reveals Cooperative Metabolic Interactions in a Microbial Cheese-Ripening Community Composed of Debaryomyces hansenii, Brevibacterium aurantiacum, and Hafnia alvei
Nguyen-Phuong Pham, Sophie Landaud, Pascale Lieben, Pascal Bonnarme, Christophe Monnet
Front Microbiol. 2019; 10: 1901. Published online 2019 Aug 16. doi: 10.3389/fmicb.2019.01901
PMCID:
PMC6706770
ArticlePDF–7.1M
20.
Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data
Xuefeng Gao, Bich-Tram Huynh, Didier Guillemot, Philippe Glaser, Lulla Opatowski
Front Microbiol. 2018; 9: 2319. Published online 2018 Oct 16. doi: 10.3389/fmicb.2018.02319
PMCID:
PMC6198172
ArticlePDF–2.4M

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