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Select item 38113511.

Variation of the Virus-Related Elements within Syntenic Genomes of the Hyperthermophilic Archaeon Aeropyrum

Takashi Daifuku, Takashi Yoshida, Takayuki Kitamura, Satoshi Kawaichi, Takahiro Inoue, Keigo Nomura, Yui Yoshida, Sotaro Kuno, Yoshihiko Sako

Appl Environ Microbiol. 2013 Oct; 79(19): 5891–5898. doi: 10.1128/AEM.01089-13

PMCID:: PMC3811351

Abstract Article PDF–847K

Select item 37035912.

Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1^T

Runar Stokke, William Peter Hocking, Bjørn Olav Steinsbu, Ida Helene Steen

Genome Announc. 2013 Jul-Aug; 1(4): e00406-13. Published online 2013 Jul 5. doi: 10.1128/genomeA.00406-13

PMCID:: PMC3703591

Abstract Article PDF–137K

Select item 35589653.

Complete genome sequence of Pyrobaculum oguniense

David L. Bernick, Kevin Karplus, Lauren M. Lui, Joanna K. C. Coker, Julie N. Murphy, Patricia P. Chan, Aaron E. Cozen, Todd M. Lowe

Stand Genomic Sci. 2012 Jul 30; 6(3): 336–345. Published online 2012 Jul 20. doi: 10.4056/sigs.2645906

PMCID:: PMC3558965

Abstract Article PDF–2.0M

Select item 35105874.

Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, “Candidatus Nitrosopumilus koreensis” AR1, from Marine Sediment

Soo-Je Park, Jong-Geol Kim, Man-Young Jung, So-Jeong Kim, In-Tae Cha, KaeKyoung Kwon, Jung-Hyun Lee, Sung-Keun Rhee

J Bacteriol. 2012 Dec; 194(24): 6940–6941. doi: 10.1128/JB.01857-12

PMCID:: PMC3510587

Abstract Article PDF–91K

Select item 34586775.

Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia

Dwi Susanti, Eric F. Johnson, Jason R. Rodriguez, Iain Anderson, Anna A. Perevalova, Nikos Kyrpides, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Mavrommatis, Lin Peters, Miriam L. Land, Loren Hauser, Venkat Gopalan, Patricia P. Chan, Todd M. Lowe, Haruyuki Atomi, Elizaveta A. Bonch-Osmolovskaya, Tanja Woyke, Biswarup Mukhopadhyay

J Bacteriol. 2012 Oct; 194(20): 5703–5704. doi: 10.1128/JB.01314-12

PMCID:: PMC3458677

Abstract Article PDF–93K

Select item 34162096.

Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei, a Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Producer

Jing Han, Fan Zhang, Jing Hou, Xiaoqing Liu, Ming Li, Hailong Liu, Lei Cai, Bing Zhang, Yaping Chen, Jian Zhou, Songnian Hu, Hua Xiang

J Bacteriol. 2012 Aug; 194(16): 4463–4464. doi: 10.1128/JB.00880-12

PMCID:: PMC3416209

Abstract Article PDF–99K

Select item 34039187.

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099^T

Shivakumara Siddaramappa, Jean F Challacombe, Rosana E DeCastro, Friedhelm Pfeiffer, Diego E Sastre, María I Giménez, Roberto A Paggi, John C Detter, Karen W Davenport, Lynne A Goodwin, Nikos Kyrpides, Roxanne Tapia, Samuel Pitluck, Susan Lucas, Tanja Woyke, Julie A Maupin-Furlow

BMC Genomics. 2012; 13: 165. Published online 2012 May 4. doi: 10.1186/1471-2164-13-165

PMCID:: PMC3403918

Abstract Article PDF–1.0M

Select item 33684058.

Complete genome sequence of Halopiger xanaduensis type strain (SH-6^T)

Iain Anderson, Brian J. Tindall, Manfred Rohde, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Lin Peters, Amrita Pati, Natalia Mikhailova, Ioanna Pagani, Hazuki Teshima, Cliff Han, Roxanne Tapia, Miriam Land, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides, Natalia Ivanova

Stand Genomic Sci. 2012 Mar 19; 6(1): 31–42. Published online 2012 Mar 5. doi: 10.4056/sigs.2505605

PMCID:: PMC3368405

Abstract Article PDF–6.2M

Select item 33496659.

The Genome Characteristics and Predicted Function of Methyl-Group Oxidation Pathway in the Obligate Aceticlastic Methanogens, Methanosaeta spp

Jinxing Zhu, Huajun Zheng, Guomin Ai, Guishan Zhang, Di Liu, Xiaoli Liu, Xiuzhu Dong

PLoS One. 2012; 7(5): e36756. Published online 2012 May 10. doi: 10.1371/journal.pone.0036756

PMCID:: PMC3349665

Abstract Article PDF–1.6M

Select item 334705410.

Genome Sequence of the Model Hyperthermophilic Archaeon Thermococcus litoralis NS-C

Andrew F. Gardner, Sanjay Kumar, Francine B. Perler

J Bacteriol. 2012 May; 194(9): 2375–2376. doi: 10.1128/JB.00123-12

PMCID:: PMC3347054

Abstract Article PDF–94K

Select item 329817911.

Identification of the Haloarchaeal Phasin (PhaP) That Functions in Polyhydroxyalkanoate Accumulation and Granule Formation in Haloferax mediterranei

Shuangfeng Cai, Lei Cai, Hailong Liu, Xiaoqing Liu, Jing Han, Jian Zhou, Hua Xiang

Appl Environ Microbiol. 2012 Mar; 78(6): 1946–1952. doi: 10.1128/AEM.07114-11

PMCID:: PMC3298179

Abstract Article PDF–1.4M

Select item 319490412.

Complete Genome Sequence of Haloarcula hispanica, a Model Haloarchaeon for Studying Genetics, Metabolism, and Virus-Host Interaction

Hailong Liu, Zhenfang Wu, Ming Li, Fan Zhang, Huajun Zheng, Jing Han, Jingfang Liu, Jian Zhou, Shengyue Wang, Hua Xiang

J Bacteriol. 2011 Nov; 193(21): 6086–6087. doi: 10.1128/JB.05953-11

PMCID:: PMC3194904

Abstract Article PDF–38K

Select item 315639713.

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A^T)

Iain Anderson, Markus Göker, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Harald Huber, Montri Yasawong, Manfred Rohde, Stefan Spring, Birte Abt, Johannes Sikorski, Reinhard Wirth, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

Stand Genomic Sci. 2011 Jul 1; 4(3): 381–392. Published online 2011 Jul 1. doi: 10.4056/sigs.2014648

PMCID:: PMC3156397

Abstract Article PDF–2.6M

Select item 314770614.

Complete Genome Sequence of the Obligate Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii CH1

Xu Jun, Liu Lupeng, Xu Minjuan, Philippe Oger, Wang Fengping, Mohamed Jebbar, Xiao Xiang

J Bacteriol. 2011 Aug; 193(16): 4297–4298. doi: 10.1128/JB.05345-11

PMCID:: PMC3147706

Abstract Article PDF–41K

Select item 313333415.

Complete Genome Sequence of Methanosaeta concilii, a Specialist in Aceticlastic Methanogenesis

Robert D. Barber, Liyang Zhang, Michelle Harnack, Maynard V. Olson, Rajinder Kaul, Cheryl Ingram-Smith, Kerry S. Smith

J Bacteriol. 2011 Jul; 193(14): 3668–3669. doi: 10.1128/JB.05031-11

PMCID:: PMC3133334

Abstract Article PDF–36K

Select item 313327316.

Complete Genome Sequence of Metallosphaera cuprina, a Metal Sulfide-Oxidizing Archaeon from a Hot Spring

Li-Jun Liu, Xiao-Yan You, Huajun Zheng, Shengyue Wang, Cheng-Ying Jiang, Shuang-Jiang Liu

J Bacteriol. 2011 Jul; 193(13): 3387–3388. doi: 10.1128/JB.05038-11

PMCID:: PMC3133273

Abstract Article PDF–39K

Select item 313318417.

Complete Genome Sequence of the Thermoacidophilic Crenarchaeon Thermoproteus uzoniensis 768-20

Andrey V. Mardanov, Vadim M. Gumerov, Alexey V. Beletsky, Maria I. Prokofeva, Elizaveta A. Bonch-Osmolovskaya, Nikolai V. Ravin, Konstantin G. Skryabin

J Bacteriol. 2011 Jun; 193(12): 3156–3157. doi: 10.1128/JB.00409-11

PMCID:: PMC3133184

Abstract Article PDF–38K

Select item 313309318.

Complete Genome Sequence of “Vulcanisaeta moutnovskia” Strain 768-28, a Novel Member of the Hyperthermophilic Crenarchaeal Genus Vulcanisaeta

Vadim M. Gumerov, Andrey V. Mardanov, Alexey V. Beletsky, Maria I. Prokofeva, Elizaveta A. Bonch-Osmolovskaya, Nikolai V. Ravin, Konstantin G. Skryabin

J Bacteriol. 2011 May; 193(9): 2355–2356. doi: 10.1128/JB.00237-11

PMCID:: PMC3133093

Abstract Article PDF–37K

Select item 311979719.

Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles

Xiao-Yan You, Chao Liu, Sheng-Yue Wang, Cheng-Ying Jiang, Shiraz A. Shah, David Prangishvili, Qunxin She, Shuang-Jiang Liu, Roger A. Garrett

Extremophiles. 2011; 15(4): 487–497. Published online 2011 May 24. doi: 10.1007/s00792-011-0379-y

PMCID:: PMC3119797

Abstract Article PDF–736K

Select item 311199120.

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1^T)

Reinhard Wirth, Olga Chertkov, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Pagani Ioanna, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Yvonne Bilek, Thomas Hader, Manfred Rohde, Stefan Spring, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk

Stand Genomic Sci. 2011 Apr 29; 4(2): 173–182. Published online 2011 Apr 29. doi: 10.4056/sigs.1644004

PMCID:: PMC3111991

Abstract Article PDF–2.6M

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