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Select item 43577541.

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

Bradley D. Ramsay, Chiachi Hwang, Hannah L. Woo, Sue L. Carroll, Susan Lucas, James Han, Alla L. Lapidus, Jan-Fang Cheng, Lynne A. Goodwin, Samuel Pitluck, Lin Peters, Olga Chertkov, Brittany Held, John C. Detter, Cliff S. Han, Roxanne Tapia, Miriam L. Land, Loren J. Hauser, Nikos C. Kyrpides, Natalia N. Ivanova, Natalia Mikhailova, Ioanna Pagani, Tanja Woyke, Adam P. Arkin, Paramvir Dehal, Dylan Chivian, Craig S. Criddle, Weimin Wu, Romy Chakraborty, Terry C. Hazen, Matthew W. Fields

Genome Announc. 2015 Mar-Apr; 3(2): e00092-15. Published online 2015 Mar 12. doi: 10.1128/genomeA.00092-15

PMCID:: PMC4357754

Abstract Article PDF–184K

Select item 35708062.

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T)

Thomas Riedel, Brittany Held, Matt Nolan, Susan Lucas, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Manfred Rohde, Brian J. Tindall, John C. Detter, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Tanja Woyke

Stand Genomic Sci. 2012 Oct 10; 7(1): 107–119. Published online 2012 Oct 10. doi: 10.4056/sigs.3216895

PMCID:: PMC3570806

Abstract Article PDF–3.7M

Select item 35589703.

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL^T)

Iain Anderson, Olga Chertkov, Amy Chen, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Krishna Palaniappan, Miriam Land, Chongle Pan, Manfred Rohde, Rüdiger Pukall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Konstantinos Mavromatis

Stand Genomic Sci. 2012 Jul 30; 6(3): 1–13. Published online 2012 Jul 20. doi: 10.4056/sigs.2736042

PMCID:: PMC3558970

Abstract Article PDF–3.7M

Select item 33887794.

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1^T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta

Birte Abt, Cliff Han, Carmen Scheuner, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Sabine Gronow, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, John C. Detter

Stand Genomic Sci. 2012 May 25; 6(2): 194–209. Published online 2012 May 4. doi: 10.4056/sigs.2796069

PMCID:: PMC3388779

Abstract Article PDF–2.2M

Select item 33877995.

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

Konstantinos Mavromatis, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, David Bruce, Lynne A. Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Tanja Woyke

Stand Genomic Sci. 2012 May 25; 6(2): 210–219. Published online 2012 May 4. doi: 10.4056/sigs.2816096

PMCID:: PMC3387799

Abstract Article PDF–3.0M

Select item 33877976.

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1^T)

Marcel Huntemann, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Chongle Pan, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Tanja Woyke

Stand Genomic Sci. 2012 May 25; 6(2): 185–193. Published online 2012 May 4. doi: 10.4056/sigs.2786069

PMCID:: PMC3387797

Abstract Article PDF–3.7M

Select item 33877967.

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP^T)

Alex Copeland, Ahmet Zeytun, Montri Yassawong, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Mavromatis, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Johannes Sikorski, Rüdiger Pukall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

Stand Genomic Sci. 2012 May 25; 6(2): 240–250. Published online 2012 Apr 27. doi: 10.4056/sigs.2756060

PMCID:: PMC3387796

Abstract Article PDF–4.1M

Select item 33877958.

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T)

Iain Anderson, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C. Kyrpides

Stand Genomic Sci. 2012 May 25; 6(2): 174–184. Published online 2012 May 4. doi: 10.4056/sigs.2746047

PMCID:: PMC3387795

Abstract Article PDF–1.5M

Select item 33877949.

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314^T)

Markus Göker, Elisabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Yun-juan Chang, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk

Stand Genomic Sci. 2012 May 25; 6(2): 230–239. Published online 2012 May 4. doi: 10.4056/sigs.2726028

PMCID:: PMC3387794

Abstract Article PDF–3.2M

Select item 338779210.

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T)

Iain Anderson, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Cynthia D. Jeffries, Yun-juan Chang, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk

Stand Genomic Sci. 2012 May 25; 6(2): 155–164. Published online 2012 May 4. doi: 10.4056/sigs.2665915

PMCID:: PMC3387792

Abstract Article PDF–2.7M

Select item 338778911.

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T)

Alex Copeland, Xiaojing Zhang, Monica Misra, Alla Lapidus, Matt Nolan, Susan Lucas, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Chongle Pan, Cynthia D. Jeffries, John C. Detter, Evelyne-Marie Brambilla, Manfred Rohde, Olivier D. Ngatchou Djao, Markus Göker, Johannes Sikorski, Brian J. Tindall, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Konstantinos Mavromatis

Stand Genomic Sci. 2012 May 25; 6(2): 145–154. Published online 2012 May 4. doi: 10.4056/sigs.2475579

PMCID:: PMC3387789

Abstract Article PDF–3.5M

Select item 336842312.

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA^T) from a deep-sea hydrothermal vent

Markus Göker, Hajnalka Daligault, Romano Mwirichia, Alla Lapidus, Susan Lucas, Shweta Deshpande, Ioanna Pagani, Roxanne Tapia, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Cliff Han, Miriam Land, Loren Hauser, Chongle Pan, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Johannes Sikorski, Reinhard Wirth, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk

Stand Genomic Sci. 2011 Dec 31; 5(3): 407–415. Published online 2011 Dec 30. doi: 10.4056/sigs.2465574

PMCID:: PMC3368423

Abstract Article PDF–3.4M

Select item 336841413.

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2^T)

Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Evelyne-Marie Brambilla, Manfred Rohde, Birte Abt, Susanne Verbarg, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Tanja Woyke

Stand Genomic Sci. 2011 Dec 31; 5(3): 398–406. Published online 2011 Dec 30. doi: 10.4056/sigs.2344929

PMCID:: PMC3368414

Abstract Article PDF–1.6M

Select item 336840814.

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1^T) from a deep-sea hydrothermal vent chimney

Alex Copeland, Wei Gu, Montri Yasawong, Alla Lapidus, Susan Lucas, Shweta Deshpande, Ioanna Pagani, Roxanne Tapia, Jan-Fang Cheng, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Chongle Pan, Evelyne-Marie Brambilla, Manfred Rohde, Brian J. Tindall, Johannes Sikorski, Markus Göker, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Tanja Woyke

Stand Genomic Sci. 2012 Mar 19; 6(1): 21–30. Published online 2012 Mar 5. doi: 10.4056/sigs.2435521

PMCID:: PMC3368408

Abstract Article PDF–3.6M

Select item 336840015.

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1^T)

Cliff Han, Oleg Kotsyurbenko, Olga Chertkov, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-juan Chang, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Manfred Rohde, Stefan Spring, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, John C. Detter

Stand Genomic Sci. 2012 Mar 19; 6(1): 94–103. Published online 2012 Mar 5. doi: 10.4056/sigs.2456004

PMCID:: PMC3368400

Abstract Article PDF–2.8M

Select item 323605116.

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20^T)

Amrita Pati, Sabine Gronow, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, John C. Detter, Evelyne-Marie Brambilla, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Natalia Ivanova

Stand Genomic Sci. 2011 Oct 15; 5(1): 41–49. Published online 2011 Sep 23. doi: 10.4056/sigs.2164949

PMCID:: PMC3236051

Abstract Article PDF–3.7M

Select item 323605017.

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262^T)

Tanja Woyke, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Manfred Rohde, Romano Mwirichia, Johannes Sikorski, Brian J. Tindall, Markus Göker, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C. Kyrpides

Stand Genomic Sci. 2011 Oct 15; 5(1): 21–29. Published online 2011 Sep 23. doi: 10.4056/sigs.2124912

PMCID:: PMC3236050

Abstract Article PDF–4.0M

Select item 323604318.

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113^T)

Konstantinos Liolios, Johannes Sikorski, Meagan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Oleg Kotsyurbenko, Manfred Rohde, Brian J. Tindall, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk, Nikos C. Kyrpides

Stand Genomic Sci. 2011 Oct 15; 5(1): 30–40. Published online 2011 Sep 23. doi: 10.4056/sigs.2154937

PMCID:: PMC3236043

Abstract Article PDF–5.4M

Select item 323604119.

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21^T)

Yun-juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina Del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Konstantinos Mavromatis, Konstantinos Liolios, Thomas Brettin, Anne Fiebig, Manfred Rohde, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

Stand Genomic Sci. 2011 Oct 15; 5(1): 97–111. Published online 2011 Oct 1. doi: 10.4056/sigs.2114901

PMCID:: PMC3236041

Abstract Article PDF–5.1M

Select item 323603820.

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2^T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

Hans-Peter Klenk, Alla Lapidus, Olga Chertkov, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Chris Daum, Amy Chen, Krishna Palaniappan, Yun-juan Chang, Miriam Land, Loren Hauser, Cynthia D. Jeffries, John C. Detter, Manfred Rohde, Birte Abt, Rüdiger Pukall, Markus Göker, James Bristow, Victor Markowitz, Philip Hugenholtz, Jonathan A. Eisen

Stand Genomic Sci. 2011 Oct 15; 5(1): 121–134. Published online 2011 Sep 23. doi: 10.4056/sigs.2144922

PMCID:: PMC3236038

Abstract Article PDF–4.7M

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