PMC Links for GEO DataSets (Select 200120771) - PMC

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Items: 4

Select item 107636901.

Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP)

Berkley E. Gryder, Javed Khan, Benjamin Z. Stanton

Nat Protoc. Author manuscript; available in PMC 2024 Jan 3.

Published in final edited form as: Nat Protoc. 2020 Mar; 15(3): 1209–1236. Published online 2020 Feb 12. doi: 10.1038/s41596-019-0285-9

PMCID:: PMC10763690

Article PDF–2.4M

Select item 86264622.

BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma

Dominik Laubscher, Berkley E. Gryder, Benjamin D. Sunkel, Thorkell Andresson, Marco Wachtel, Sudipto Das, Bernd Roschitzki, Witold Wolski, Xiaoli S. Wu, Hsien-Chao Chou, Young K. Song, Chaoyu Wang, Jun S. Wei, Meng Wang, Xinyu Wen, Quy Ai Ngo, Joana G. Marques, Christopher R. Vakoc, Beat W. Schäfer, Benjamin Z. Stanton, Javed Khan

Nat Commun. 2021; 12: 6924. Published online 2021 Nov 26. doi: 10.1038/s41467-021-27176-w

PMCID:: PMC8626462

Article PDF–3.6M

Select item 74381123.

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency

Joana G Marques, Berkley E Gryder, Blaz Pavlovic, Yeonjoo Chung, Quy A Ngo, Fabian Frommelt, Matthias Gstaiger, Young Song, Katharina Benischke, Dominik Laubscher, Marco Wachtel, Javed Khan, Beat W Schäfer

eLife. 2020; 9: e54993. Published online 2020 Aug 3. doi: 10.7554/eLife.54993

PMCID:: PMC7438112

Article PDF–4.5M

Select item 66143694.

Chemical genomics reveals histone deacetylases are required for core regulatory transcription

Berkley E. Gryder, Lei Wu, Girma M. Woldemichael, Silvia Pomella, Taylor R. Quinn, Paul M. C. Park, Abigail Cleveland, Benjamin Z. Stanton, Young Song, Rossella Rota, Olaf Wiest, Marielle E. Yohe, Jack F. Shern, Jun Qi, Javed Khan

Nat Commun. 2019; 10: 3004. Published online 2019 Jul 8. doi: 10.1038/s41467-019-11046-7