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Items: 20

1.
Lineage-specific control of convergent differentiation by a Forkhead repressor
Karolina Mizeracka, Julia M. Rogers, Jonathan D. Rumley, Shai Shaham, Martha L. Bulyk, John I. Murray, Maxwell G. Heiman
Development. 2021 Oct 1; 148(19): dev199493. Published online 2021 Sep 26. doi: 10.1242/dev.199493
PMCID:
PMC8502252
AbstractArticle
2.
The forkhead transcription factor UNC-130/FOXD integrates both BMP and Notch signaling to regulate dorsoventral patterning of the C. elegans postembryonic mesoderm
Qinfang Shen, Leila B. Toulabi, Herong Shi, Erin E. Nicklow, Jun Liu
Dev Biol. Author manuscript; available in PMC 2019 Jan 1.
Published in final edited form as: Dev Biol. 2018 Jan 1; 433(1): 75–83. Published online 2017 Nov 16. doi: 10.1016/j.ydbio.2017.11.008
PMCID:
PMC5722696
AbstractArticlePDF–792K
3.
Regulation of UNC-130/FOXD-Mediated Mesodermal Patterning in C. elegans
Rossio K. Kersey, Thomas M. Brodigan, Tetsunari Fukushige, Michael W. Krause
Dev Biol. Author manuscript; available in PMC 2017 Aug 15.
Published in final edited form as: Dev Biol. 2016 Aug 15; 416(2): 300–311. Published online 2016 Jun 21. doi: 10.1016/j.ydbio.2016.06.029
PMCID:
PMC4983225
AbstractArticlePDF–1.1M
4.
Promoters Recognized by Forkhead Proteins Exist for Individual 21U-RNAs
Germano Cecere, Grace X.Y. Zheng, Andres R. Mansisidor, Katherine E. Klymko, Alla Grishok
Mol Cell. Author manuscript; available in PMC 2013 Sep 14.
Published in final edited form as: Mol Cell. 2012 Sep 14; 47(5): 734–745. Published online 2012 Jul 19. doi: 10.1016/j.molcel.2012.06.021
PMCID:
PMC3444671
AbstractArticlePDF–2.7M
5.
The transcription factor unc-130/FOXD3/4 contributes to the biphasic calcium response required to optimize avoidance behavior
Sayaka Hori, Shohei Mitani
Sci Rep. 2022; 12: 1907. Published online 2022 Feb 3. doi: 10.1038/s41598-022-05942-0
PMCID:
PMC8814005
AbstractArticlePDF–2.2M
6.
The Forkhead transcription factor UNC-130 is required for the graded spatial expression of the UNC-129 TGF-β guidance factor in C. elegans
Bruce Nash, Antonio Colavita, Hong Zheng, Peter J. Roy, Joseph G. Culotti
Genes Dev. 2000 Oct 1; 14(19): 2486–2500. doi: 10.1101/gad.831500
PMCID:
PMC316974
AbstractArticlePDF–7.1M
7.
mab-31 and the TGF-β pathway act in the ray lineage to pattern C. elegans male sensory rays
Yan-Fung Wong, Qing Sheng, Janet WL Chung, Jacky KF Chan, King L Chow
BMC Dev Biol. 2010; 10: 82. Published online 2010 Aug 5. doi: 10.1186/1471-213X-10-82
PMCID:
PMC2921377
AbstractArticlePDF–4.6M
8.
The forkhead domain gene unc-130 generates chemosensory neuron diversity in C. elegans
Trina R. Sarafi-Reinach, Piali Sengupta
Genes Dev. 2000 Oct 1; 14(19): 2472–2485. doi: 10.1101/gad.832300
PMCID:
PMC316968
AbstractArticlePDF–4.3M
9.
Genes That Control Ray Sensory Neuron Axon Development in the Caenorhabditis elegans Male
Lingyun Jia, Scott W. Emmons
Genetics. 2006 Jul; 173(3): 1241–1258. doi: 10.1534/genetics.106.057000
PMCID:
PMC1526702
AbstractArticlePDF–1.0M
10.
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
Wei Niu, Zhi John Lu, Mei Zhong, Mihail Sarov, John I. Murray, Cathleen M. Brdlik, Judith Janette, Chao Chen, Pedro Alves, Elicia Preston, Cindie Slightham, Lixia Jiang, Anthony A. Hyman, Stuart K. Kim, Robert H. Waterston, Mark Gerstein, Michael Snyder, Valerie Reinke
Genome Res. 2011 Feb; 21(2): 245–254. doi: 10.1101/gr.114587.110
PMCID:
PMC3032928
AbstractArticlePDF–1.3M
11.
Rapid Sequence Evolution of Transcription Factors Controlling Neuron Differentiation in Caenorhabditis
Richard Jovelin
Mol Biol Evol. 2009 Oct; 26(10): 2373–2386. Published online 2009 Jul 9. doi: 10.1093/molbev/msp142
PMCID:
PMC2766936
AbstractArticlePDF–175K
12.
Specification of the nervous system.
Oliver Hobert
WormBook. 2005 : 1–19. Published online 2005 Aug 8. doi: 10.1895/wormbook.1.12.1
PMCID:
PMC4781215
AbstractArticle
13.
Acute carbon dioxide avoidance in Caenorhabditis elegans
Elissa A. Hallem, Paul W. Sternberg
Proc Natl Acad Sci U S A. 2008 Jun 10; 105(23): 8038–8043. Published online 2008 Jun 4. doi: 10.1073/pnas.0707469105
PMCID:
PMC2430355
AbstractArticlePDF–452K
14.
Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain
Faruk Dube, Andrea Hinas, Nicolas Delhomme, Magnus Åbrink, Staffan Svärd, Eva Tydén
PLoS One. 2023; 18(5): e0285262. Published online 2023 May 4. doi: 10.1371/journal.pone.0285262
PMCID:
PMC10159168
AbstractArticlePDF–1.9M
15.
A global analysis of genetic interactions in Caenorhabditis elegans
Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy
J Biol. 2007; 6(3): 8. Published online 2007 Sep 26. doi: 10.1186/jbiol58
PMCID:
PMC2373897
AbstractArticlePDF–3.5M
16.
Extensive Rewiring and Complex Evolutionary Dynamics in a C. elegans Multiparameter Transcription Factor Network
John S. Reece-Hoyes, Carles Pons, Alos Diallo, Akihiro Mori, Shaleen Shrestha, Sreenath Kadreppa, Justin Nelson, Stephanie DiPrima, Amelie Dricot, Bryan R. Lajoie, Philippe Souza Moraes Ribeiro, Matthew T. Weirauch, David E. Hill, Timothy R. Hughes, Chad L. Myers, Albertha J.M. Walhout
Mol Cell. Author manuscript; available in PMC 2013 Oct 10.
Published in final edited form as: Mol Cell. 2013 Jul 11; 51(1): 116–127. Published online 2013 Jun 20. doi: 10.1016/j.molcel.2013.05.018
PMCID:
PMC3794439
AbstractArticlePDF–5.2M
17.
Transcriptional regulation.
Peter G Okkema, Michael Krause
WormBook. 2005 : 1–40. Published online 2005 Dec 23. doi: 10.1895/wormbook.1.45.1
PMCID:
PMC4781111
AbstractArticle
18.
Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network
Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279
PMCID:
PMC3057923
AbstractArticlePDF–3.0M
19.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
20.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M

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