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Items: 1 to 20 of 27

1.
Dynamics of GreB-RNA polymerase interaction allow a proofreading accessory protein to patrol for transcription complexes needing rescue
Larry E. Tetone, Larry J. Friedman, Melisa L. Osborne, Harini Ravi, Scotty Kyzer, Sarah K. Stumper, Rachel A. Mooney, Robert Landick, Jeff Gelles
Proc Natl Acad Sci U S A. 2017 Feb 14; 114(7): E1081–E1090. Published online 2017 Jan 30. doi: 10.1073/pnas.1616525114
PMCID:
PMC5320998
AbstractArticlePDF–1.3M
2.
Recognition of a Human Arrest Site Is Conserved between RNA Polymerase II and Prokaryotic RNA Polymerases
John Mote, Jr., Daniel Reines
J Biol Chem. Author manuscript; available in PMC 2012 Jun 11.
Published in final edited form as: J Biol Chem. 1998 Jul 3; 273(27): 16843–16852. doi: 10.1074/jbc.273.27.16843
PMCID:
PMC3371603
AbstractArticlePDF–1.9M
3.
The Nun protein of bacteriophage HK022 inhibits translocation of Escherichia coli RNA polymerase without abolishing its catalytic activities
Siu Chun Hung, Max E. Gottesman
Genes Dev. 1997 Oct 15; 11(20): 2670–2678. doi: 10.1101/gad.11.20.2670
PMCID:
PMC316606
AbstractArticlePDF–1.5M
4.
Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription
Sarah K Stumper, Harini Ravi, Larry J Friedman, Rachel Anne Mooney, Ivan R Corrêa, Jnr, Anne Gershenson, Robert Landick, Jeff Gelles
eLife. 2019; 8: e40576. Published online 2019 Feb 5. doi: 10.7554/eLife.40576
PMCID:
PMC7028371
AbstractArticlePDF–1.9M
5.
An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase
Ran Furman, Oleg V. Tsodikov, Yuri I. Wolf, Irina Artsimovitch
J Mol Biol. Author manuscript; available in PMC 2017 Jul 23.
Published in final edited form as: J Mol Biol. 2013 Jan 9; 425(1): 82–93. Published online 2012 Nov 9. doi: 10.1016/j.jmb.2012.11.008
PMCID:
PMC5522729
AbstractArticlePDF–2.5M
6.
A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli
Mikhail G. Bubunenko, Carolyn B. Court, Alison J. Rattray, Deanna R. Gotte, Maria L. Kireeva, Jorge A. Irizarry-Caro, Xintian Li, Ding J. Jin, Donald L. Court, Jeffrey N. Strathern, Mikhail Kashlev
Genetics. 2017 May; 206(1): 179–187. Published online 2017 Mar 23. doi: 10.1534/genetics.116.198960
PMCID:
PMC5419468
AbstractArticlePDF–798K
7.
Transcriptional Infidelity Promotes Heritable Phenotypic Change in a Bistable Gene Network
Alasdair J. E Gordon, Jennifer A Halliday, Matthew D Blankschien, Philip A Burns, Fumio Yatagai, Christophe Herman
PLoS Biol. 2009 Feb; 7(2): e1000044. Published online 2009 Feb 24. doi: 10.1371/journal.pbio.1000044
PMCID:
PMC2652393
AbstractArticlePDF–225K
8.
TraR, a Homolog of a RNAP Secondary Channel Interactor, Modulates Transcription
Matthew D. Blankschien, Katarzyna Potrykus, Elicia Grace, Abha Choudhary, Daniel Vinella, Michael Cashel, Christophe Herman
PLoS Genet. 2009 Jan; 5(1): e1000345. Published online 2009 Jan 16. doi: 10.1371/journal.pgen.1000345
PMCID:
PMC2613031
AbstractArticlePDF–409K
9.
The carboxy-terminal coiled-coil of the RNA polymerase β′-subunit is the main binding site for Gre factors
Marina N Vassylyeva, Vladimir Svetlov, Altaira D Dearborn, Sergiy Klyuyev, Irina Artsimovitch, Dmitry G Vassylyev
EMBO Rep. 2007 Nov; 8(11): 1038–1043. Published online 2007 Oct 5. doi: 10.1038/sj.embor.7401079
PMCID:
PMC2247394
AbstractArticlePDF–421K
10.
A pathway branching in transcription initiation in Escherichia coli
Motoki Susa, Tomoko Kubori, Nobuo Shimamoto
Mol Microbiol. 2006 Mar; 59(6): 1807–1817. Published online 2006 Jan 30. doi: 10.1111/j.1365-2958.2006.05058.x
PMCID:
PMC1413587
AbstractArticlePDF–394K
11.
Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus
Anna A. Perederina, Marina N. Vassylyeva, Igor A. Berezin, Vladimir Svetlov, Irina Artsimovitch, Dmitry G. Vassylyev
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jan 1; 62(Pt 1): 44–46. Published online 2005 Dec 16. doi: 10.1107/S1744309105040297
PMCID:
PMC1401493
AbstractArticlePDF–225K
12.
Characterization of monoclonal antibodies against Escherichia coli core RNA polymerase.
Jöelle Rouby, Martine Pugniere, Jean-Claude Mani, Claude Granier, Pierrette Monmouton, Stephane Theulier Saint Germain, Jean-Paul Leonetti
Biochem J. 2002 Jan 15; 361(Pt 2): 347–354. doi: 10.1042/0264-6021:3610347
PMCID:
PMC1222314
SummaryPDF–212K
13.
GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming
Francine Toulmé, Christine Mosrin-Huaman, Jason Sparkowski, Asis Das, Marc Leng, A. Rachid Rahmouni
EMBO J. 2000 Dec 15; 19(24): 6853–6859. doi: 10.1093/emboj/19.24.6853
PMCID:
PMC305891
AbstractArticlePDF–178K
14.
RNA cleavage and chain elongation by Escherichia coli DNA-dependent RNA polymerase in a binary enzyme.RNA complex.
C R Altmann, D E Solow-Cordero, M J Chamberlin
Proc Natl Acad Sci U S A. 1994 Apr 26; 91(9): 3784–3788. doi: 10.1073/pnas.91.9.3784
PMCID:
PMC43666
SummaryPage BrowsePDF–1.4M
15.
Intrinsic transcript cleavage activity of RNA polymerase.
M Orlova, J Newlands, A Das, A Goldfarb, S Borukhov
Proc Natl Acad Sci U S A. 1995 May 9; 92(10): 4596–4600. doi: 10.1073/pnas.92.10.4596
PMCID:
PMC41991
SummaryPage BrowsePDF–1.6M
16.
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro.
L M Hsu, N V Vo, M J Chamberlin
Proc Natl Acad Sci U S A. 1995 Dec 5; 92(25): 11588–11592. doi: 10.1073/pnas.92.25.11588
PMCID:
PMC40447
SummaryPage BrowsePDF–1.3M
17.
Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria
Zhe Sun, Alexander V. Yakhnin, Peter C. FitzGerald, Carl E. Mclntosh, Mikhail Kashlev
Nat Commun. 2021; 12: 906. Published online 2021 Feb 10. doi: 10.1038/s41467-021-21150-2
PMCID:
PMC7876045
AbstractArticlePDF–5.7M
18.
Early Transcriptional Arrest at Escherichia coli rplN and ompX Promoters
Ekaterina Stepanova, Minshi Wang, Konstantin Severinov, Sergei Borukhov
J Biol Chem. 2009 Dec 18; 284(51): 35702–35713. Published online 2009 Oct 23. doi: 10.1074/jbc.M109.053983
PMCID:
PMC2791001
AbstractArticlePDF–4.0M
19.
Initial transcribed sequence mutations specifically affect promoter escape properties
Lilian M. Hsu, Ingrid M. Cobb, Jillian R. Ozmore, Maureen Khoo, Grace Nahm, Lulin Xia, Yeran Bao, Colette Ahn
Biochemistry. Author manuscript; available in PMC 2008 Sep 3.
Published in final edited form as: Biochemistry. 2006 Jul 25; 45(29): 8841–8854. doi: 10.1021/bi060247u
PMCID:
PMC2528282
AbstractArticlePDF–1.5M
20.
GreA protein: a transcription elongation factor from Escherichia coli.
S Borukhov, A Polyakov, V Nikiforov, A Goldfarb
Proc Natl Acad Sci U S A. 1992 Oct 1; 89(19): 8899–8902. doi: 10.1073/pnas.89.19.8899
PMCID:
PMC50031
SummaryPage BrowsePDF–1.0M

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