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Select item 54955181.

Splicing stimulates siRNA formation at Drosophila DNA double-strand breaks

Karin Merk, Marco Breinig, Romy Böttcher, Stefan Krebs, Helmut Blum, Michael Boutros, Klaus Förstemann

PLoS Genet. 2017 Jun; 13(6): e1006861. Published online 2017 Jun 19. doi: 10.1371/journal.pgen.1006861

PMCID:: PMC5495518

Abstract Article PDF–6.4M

Select item 1690332.

GeneFizz: a web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives

Edouard Yeramian, Louis Jones

Nucleic Acids Res. 2003 Jul 1; 31(13): 3843–3849. doi: 10.1093/nar/gkg627

PMCID:: PMC169033

Abstract Article PDF–1.7M

Select item 94511533.

A neurogenetic mechanism of experience-dependent suppression of aggression

Kenichi Ishii, Matteo Cortese, Xubo Leng, Maxim N. Shokhirev, Kenta Asahina

Sci Adv. 2022 Sep; 8(36): eabg3203. Published online 2022 Sep 7. doi: 10.1126/sciadv.abg3203

PMCID:: PMC9451153

Abstract Article PDF–5.6M

Select item 70569754.

Genetic Basis of Increased Lifespan and Postponed Senescence in Drosophila melanogaster

Grace A. Parker, Nathan Kohn, Ally Spirina, Anna McMillen, Wen Huang, Trudy F. C. Mackay

G3 (Bethesda) 2020 Mar; 10(3): 1087–1098. Published online 2020 Jan 22. doi: 10.1534/g3.120.401041

PMCID:: PMC7056975

Abstract Article PDF–1.8M

Select item 38143525.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity

John D. Laver, Xiao Li, Kristin Ancevicius, J. Timothy Westwood, Craig A. Smibert, Quaid D. Morris, Howard D. Lipshitz

Nucleic Acids Res. 2013 Nov; 41(20): 9438–9460. Published online 2013 Aug 13. doi: 10.1093/nar/gkt702

PMCID:: PMC3814352

Abstract Article PDF–2.4M

Select item 39045846.

Drosophila miR-277 controls branched-chain amino acid catabolism and affects lifespan

Stephanie Maria Esslinger, Björn Schwalb, Stephanie Helfer, Katharina Maria Michalik, Heidi Witte, Kerstin C. Maier, Dietmar Martin, Bernhard Michalke, Achim Tresch, Patrick Cramer, Klaus Förstemann

RNA Biol. 2013 Jun 1; 10(6): 1042–1056. Published online 2013 Apr 30. doi: 10.4161/rna.24810

PMCID:: PMC3904584

Abstract Article PDF–2.3M

Select item 3111177.

From First Base: The Sequence of the Tip of the X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies

Panayiotis V. Benos, Melanie K. Gatt, Lee Murphy, David Harris, Bart Barrell, Concepcion Ferraz, Sophie Vidal, Christine Brun, Jacques Demaille, Edouard Cadieu, Stephane Dreano, Stéphanie Gloux, Valerie Lelaure, Stephanie Mottier, Francis Galibert, Dana Borkova, Belen Miñana, Fotis C. Kafatos, Slava Bolshakov, Inga Sidén-Kiamos, George Papagiannakis, Lefteris Spanos, Christos Louis, Encarnación Madueño, Beatriz de Pablos, Juan Modolell, Annette Peter, Petra Schöttler, Meike Werner, Fotini Mourkioti, Nicole Beinert, Gordon Dowe, Ulrich Schäfer, Herbert Jäckle, Alain Bucheton, Debbie Callister, Lorna Campbell, Nadine S. Henderson, Paul J. McMillan, Cathy Salles, Evelyn Tait, Phillipe Valenti, Robert D.C. Saunders, Alain Billaud, Lior Pachter, David M. Glover, Michael Ashburner

Genome Res. 2001 May; 11(5): 710–730. doi: 10.1101/gr.173801

PMCID:: PMC311117

Abstract Article PDF–611K

Select item 30936208.

Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi

Ralph A. Neumüller, Constance Richter, Anja Fischer, Maria Novatchkova, Klaus G. Neumüller, Juergen A. Knoblich

Cell Stem Cell. 2011 May 6; 8(5): 580–593. doi: 10.1016/j.stem.2011.02.022

PMCID:: PMC3093620

Abstract Article

Select item 34411849.

Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster

Amber R. Krauchunas, Vanessa L. Horner, Mariana F. Wolfner

Dev Biol. Author manuscript; available in PMC 2013 Oct 1.

Published in final edited form as: Dev Biol. 2012 Oct 1; 370(1): 125–134. Published online 2012 Jul 31. doi: 10.1016/j.ydbio.2012.07.024

PMCID:: PMC3441184

Abstract Article PDF–2.5M

Select item 54579910.

A Drosophila protein-interaction map centered on cell-cycle regulators

Clement A Stanyon, Guozhen Liu, Bernardo A Mangiola, Nishi Patel, Loic Giot, Bing Kuang, Huamei Zhang, Jinhui Zhong, Russell L Finley, Jr

Genome Biol. 2004; 5(12): R96. Published online 2004 Nov 26. doi: 10.1186/gb-2004-5-12-r96

PMCID:: PMC545799

Abstract Article PDF–1.2M

Select item 1094570711.

Comparative interactome analysis of α-arrestin families in human and Drosophila

Kyung-Tae Lee, Inez KA Pranoto, Soon-Young Kim, Hee-Joo Choi, Ngoc Bao To, Hansong Chae, Jeong-Yeon Lee, Jung-Eun Kim, Young V Kwon, Jin-Wu Nam

eLife. 2024; 12: RP88328. Published online 2024 Jan 25. doi: 10.7554/eLife.88328

PMCID:: PMC10945707

Abstract Article PDF–2.8M

Select item 478811612.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 866448613.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 488965814.

mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster

Gildas Lepennetier, Francesco Catania

G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231

PMCID:: PMC4889658

Abstract Article PDF–1.5M

Select item 427152715.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 304044116.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 353067717.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 570780518.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900219.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 435288720.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

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