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Items: 1 to 20 of 174

1.
Reconstitution of morphogen shuttling circuits
Ronghui Zhu, Leah A. Santat, Joseph S. Markson, Nagarajan Nandagopal, Jan Gregrowicz, Michael B. Elowitz
Sci Adv. 2023 Jul; 9(28): eadf9336. Published online 2023 Jul 12. doi: 10.1126/sciadv.adf9336
PMCID:
PMC10337948
AbstractArticlePDF–2.5M
2.
Shadow enhancers modulate distinct transcriptional parameters that differentially effect downstream patterning events
Peter H. Whitney, Bikhyat Shrestha, Jiahan Xiong, Tom Zhang, Christine A. Rushlow
Development. 2022 Nov 1; 149(21): dev200940. Published online 2022 Nov 1. doi: 10.1242/dev.200940
PMCID:
PMC9687063
AbstractArticle
3.
Transcriptional activity of the short gastrulation primary enhancer in the ventral midline requires its early activity in the presumptive neurogenic ectoderm
Dong-Hyeon Shin, Joung-Woo Hong
BMB Rep. 2016 Oct 31; 49(10): 572–577. doi: 10.5483/BMBRep.2016.49.10.119
PMCID:
PMC5227300
AbstractArticlePDF–1.9M
4.
Coacting enhancers can have complementary functions within gene regulatory networks and promote canalization
Leslie Dunipace, Zsuzsa Ákos, Angelike Stathopoulos
PLoS Genet. 2019 Dec; 15(12): e1008525. Published online 2019 Dec 12. doi: 10.1371/journal.pgen.1008525
PMCID:
PMC6932828
AbstractArticlePDF–4.8M
5.
Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time
Theodora Koromila, Angelike Stathopoulos
Cell Rep. Author manuscript; available in PMC 2019 Dec 23.
Published in final edited form as: Cell Rep. 2019 Jul 23; 28(4): 855–863.e5. doi: 10.1016/j.celrep.2019.06.063
PMCID:
PMC6927530
AbstractArticlePDF–2.1M
6.
A computational statistics approach for estimating the spatial range of morphogen gradients
Jitendra S. Kanodia, Yoosik Kim, Raju Tomer, Zia Khan, Kwanghun Chung, John D. Storey, Hang Lu, Philipp J. Keller, Stanislav Y. Shvartsman
Development. 2011 Nov 15; 138(22): 4867–4874. doi: 10.1242/dev.071571
PMCID:
PMC3201657
AbstractArticle
7.
Regulation of the dynamic RNA Pol II elongation rate in Drosophila embryos
Samuel H. Keller, Hao Deng, Bomyi Lim
Cell Rep. Author manuscript; available in PMC 2024 Feb 5.
Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113225. Published online 2023 Oct 12. doi: 10.1016/j.celrep.2023.113225
PMCID:
PMC10842316
AbstractArticlePDF–1.6M
8.
Robustness of the Dorsal morphogen gradient with respect to morphogen dosage
Hadel Al Asafen, Prasad U. Bandodkar, Sophia Carrell-Noel, Allison E. Schloop, Jeramey Friedman, Gregory T. Reeves
PLoS Comput Biol. 2020 Apr; 16(4): e1007750. Published online 2020 Apr 6. doi: 10.1371/journal.pcbi.1007750
PMCID:
PMC7162545
AbstractArticlePDF–2.3M
9.
Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo
Jitendra S. Kanodia, Hsiao-Lan Liang, Yoosik Kim, Bomyi Lim, Mei Zhan, Hang Lu, Christine A. Rushlow, Stanislav Y. Shvartsman
Biophys J. 2012 Feb 8; 102(3): 427–433. doi: 10.1016/j.bpj.2011.12.042
PMCID:
PMC3274790
AbstractArticlePDF–667K
10.
Variation in Mesoderm Specification across Drosophilids Is Compensated by Different Rates of Myoblast Fusion during Body Wall Musculature Development
Mirela Belu, Claudia M. Mizutani
PLoS One. 2011; 6(12): e28970. Published online 2011 Dec 14. doi: 10.1371/journal.pone.0028970
PMCID:
PMC3237579
AbstractArticlePDF–5.3M
11.
Localized Ectopic Expression of Dpp Receptors in a Drosophila Embryo
A.D. Lander, Q. Nie, F.Y.M. Wan, Y.-T. Zhang
Stud Appl Math. Author manuscript; available in PMC 2010 Aug 1.
Published in final edited form as: Stud Appl Math. 2009 Aug 1; 123(2): 175–214. doi: 10.1111/j.1467-9590.2009.00450.x
PMCID:
PMC2774827
AbstractArticlePDF–4.6M
12.
Modelling the structure of Short Gastrulation and generation of a toolkit for studying its function in Drosophila
Sophie L. Frampton, Catherine Sutcliffe, Clair Baldock, Hilary L. Ashe
Biol Open. 2022 Jun 15; 11(6): bio059199. Published online 2022 Jun 10. doi: 10.1242/bio.059199
PMCID:
PMC9194680
AbstractArticlePDF–7.0M
13.
The Transcription Factor NF-κB in Stem Cells and Development
Christian Kaltschmidt, Johannes F. W. Greiner, Barbara Kaltschmidt
Cells. 2021 Aug; 10(8): 2042. Published online 2021 Aug 10. doi: 10.3390/cells10082042
PMCID:
PMC8391683
AbstractArticlePDF–1.8M
14.
The Drosophila pioneer factor Zelda modulates the nuclear microenvironment of a Dorsal target enhancer to potentiate transcriptional output
Shigehiro Yamada, Peter H. Whitney, Shao-Kuei Huang, Elizabeth C. Eck, Hernan G. Garcia, Christine A. Rushlow
Curr Biol. Author manuscript; available in PMC 2020 Apr 22.
Published in final edited form as: Curr Biol. 2019 Apr 22; 29(8): 1387–1393.e5. Published online 2019 Apr 11. doi: 10.1016/j.cub.2019.03.019
PMCID:
PMC6702943
AbstractArticlePDF–1.7M
15.
Mitosis-associated repression in development
Emilia Esposito, Bomyi Lim, Ghita Guessous, Hanieh Falahati, Michael Levine
Genes Dev. 2016 Jul 1; 30(13): 1503–1508. doi: 10.1101/gad.281188.116
PMCID:
PMC4949323
AbstractArticlePDF–748K
16.
Comparing mRNA levels using in situ hybridization of a target gene and co-stain
Zeba Wunderlich, Meghan D Bragdon, Angela H DePace
Methods. Author manuscript; available in PMC 2015 Jun 15.
Published in final edited form as: Methods. 2014 Jun 15; 68(1): 233–241. Published online 2014 Jan 13. doi: 10.1016/j.ymeth.2014.01.003
PMCID:
PMC4048779
AbstractArticlePDF–1.3M
17.
Transcriptional repression via antilooping in the Drosophila embryo
Vivek S. Chopra, Nikki Kong, Michael Levine
Proc Natl Acad Sci U S A. 2012 Jun 12; 109(24): 9460–9464. Published online 2012 May 29. doi: 10.1073/pnas.1102625108
PMCID:
PMC3386088
AbstractArticlePDF–718K
18.
Separation of transcriptional repressor and activator functions in Drosophila HDAC3
Min Tang, Isabel Regadas, Sergey Belikov, Olga Shilkova, Lei Xu, Erik Wernersson, Xuewen Liu, Hongmei Wu, Magda Bienko, Mattias Mannervik
Development. 2023 Aug 1; 150(15): dev201548. Published online 2023 Aug 2. doi: 10.1242/dev.201548
PMCID:
PMC10445730
AbstractArticle
19.
Modulation of transcription burst amplitude underpins dosage compensation in the Drosophila embryo
Lauren Forbes Beadle, Hongpeng Zhou, Magnus Rattray, Hilary L. Ashe
Cell Rep. 2023 Apr 25; 42(4): 112382. Published online 2023 Apr 14. doi: 10.1016/j.celrep.2023.112382
PMCID:
PMC10283159
AbstractArticle
20.
SUMOylation of Dorsal attenuates Toll/NF-κB signaling
Sushmitha Hegde, Ashley Sreejan, Chetan J Gadgil, Girish S Ratnaparkhi
Genetics. 2022 Jul; 221(3): iyac081. Published online 2022 May 14. doi: 10.1093/genetics/iyac081
PMCID:
PMC9252280
AbstractArticlePDF–1.9M

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