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Select item 50433831.

BEN domain protein Elba2 can functionally substitute for linker histone H1 in Drosophila in vivo

Na Xu, Xingwu Lu, Harsh Kavi, Alexander V. Emelyanov, Travis J. Bernardo, Elena Vershilova, Arthur I. Skoultchi, Dmitry V. Fyodorov

Sci Rep. 2016; 6: 34354. Published online 2016 Sep 30. doi: 10.1038/srep34354

PMCID:: PMC5043383

Abstract Article PDF–1.1M

Select item 62165832.

The BEN Domain Protein Insensitive Binds to the Fab-7 Chromatin Boundary To Establish Proper Segmental Identity in Drosophila

Anna Fedotova, Tsutomu Aoki, Mikaël Rossier, Rakesh Kumar Mishra, Chaevia Clendinen, Olga Kyrchanova, Daniel Wolle, Artem Bonchuk, Robert K. Maeda, Annick Mutero, Fabienne Cleard, Vladic Mogila, François Karch, Pavel Georgiev, Paul Schedl

Genetics. 2018 Oct; 210(2): 573–585. Published online 2018 Jun 8. doi: 10.1534/genetics.118.301259

PMCID:: PMC6216583

Abstract Article PDF–2.0M

Select item 22233923.

A Stage-Specific Factor Confers Fab-7 Boundary Activity during Early Embryogenesis in Drosophila

Tsutomu Aoki, Susan Schweinsberg, Julia Manasson, Paul Schedl

Mol Cell Biol. 2008 Feb; 28(3): 1047–1060. Published online 2007 Nov 26. doi: 10.1128/MCB.01622-07

PMCID:: PMC2223392

Abstract Article PDF–766K

Select item 69110144.

BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila

Malin Ueberschär, Huazhen Wang, Chun Zhang, Shu Kondo, Tsutomu Aoki, Paul Schedl, Eric C. Lai, Jiayu Wen, Qi Dai

Nat Commun. 2019; 10: 5700. Published online 2019 Dec 13. doi: 10.1038/s41467-019-13558-8

PMCID:: PMC6911014

Abstract Article PDF–3.4M

Select item 52898395.

Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex

Fabienne Cleard, Daniel Wolle, Andrew M. Taverner, Tsutomu Aoki, Girish Deshpande, Peter Andolfatto, Francois Karch, Paul Schedl

Genetics. 2017 Feb; 205(2): 589–603. Published online 2016 Dec 20. doi: 10.1534/genetics.116.195586

PMCID:: PMC5289839

Abstract Article PDF–2.5M

Select item 39748946.

Bi-functional cross-linking reagents efficiently capture protein-DNA complexes in Drosophila embryos

Tsutomu Aoki, Daniel Wolle, Ella Preger-Ben Noon, Qi Dai, Eric C Lai, Paul Schedl

Fly (Austin) 2014 Jan 1; 8(1): 43–51. Published online 2013 Dec 13. doi: 10.4161/fly.26805

PMCID:: PMC3974894

Abstract Article PDF–1.3M

Select item 42815647.

Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family

Qi Dai, Aiming Ren, Jakub O. Westholm, Hong Duan, Dinshaw J. Patel, Eric C. Lai

Genes Dev. 2015 Jan 1; 29(1): 48–62. doi: 10.1101/gad.252122.114

PMCID:: PMC4281564

Abstract Article PDF–1.8M

Select item 50940118.

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects: Insect insulator proteins

Thomas Pauli, Lucia Vedder, Daniel Dowling, Malte Petersen, Karen Meusemann, Alexander Donath, Ralph S. Peters, Lars Podsiadlowski, Christoph Mayer, Shanlin Liu, Xin Zhou, Peter Heger, Thomas Wiehe, Lars Hering, Georg Mayer, Bernhard Misof, Oliver Niehuis

BMC Genomics. 2016; 17: 861. Published online 2016 Nov 3. doi: 10.1186/s12864-016-3205-1

PMCID:: PMC5094011

Abstract Article PDF–1.0M

Select item 45895999.

Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex

Daniel Wolle, Fabienne Cleard, Tsutomu Aoki, Girish Deshpande, Paul Schedl, Francois Karch

Mol Cell Biol. 2015 Nov; 35(21): 3739–3752. Prepublished online 2015 Aug 24. Published online 2015 Sep 30. doi: 10.1128/MCB.00456-15

PMCID:: PMC4589599

Abstract Article PDF–2.2M

Select item 711601710.

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Yad Ghavi-Helm, Aleksander Jankowski, Sascha Meiers, Rebecca R. Viales, Jan O. Korbel, Eileen E.M. Furlong

Nat Genet. Author manuscript; available in PMC 2020 Sep 1.

Published in final edited form as: Nat Genet. 2019 Aug 1; 51(8): 1272–1282. Published online 2019 Jul 15. doi: 10.1038/s41588-019-0462-3

PMCID:: PMC7116017

Abstract Article PDF–2.8M

Select item 741156811.

Predictive features of gene expression variation reveal mechanistic link with differential expression

Olga M Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen EM Furlong, Judith B Zaugg

Mol Syst Biol. 2020 Aug; 16(8): e9539. Published online 2020 Aug 7. doi: 10.15252/msb.20209539

PMCID:: PMC7411568

Abstract Article PDF–7.7M

Select item 351045412.

Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex

Tsutomu Aoki, Ali Sarkeshik, John Yates, Paul Schedl

eLife. 2012; 1: e00171. Published online 2012 Dec 13. doi: 10.7554/eLife.00171

PMCID:: PMC3510454

Abstract Article PDF–4.1M

Select item 780060613.

The Functions and Mechanisms of Action of Insulators in the Genomes of Higher Eukaryotes

L. S. Melnikova, P. G. Georgiev, A. K. Golovnin

Acta Naturae. 2020 Oct-Dec; 12(4): 15–33. doi: 10.32607/actanaturae.11144

PMCID:: PMC7800606

Abstract Article PDF–5.8M

Select item 1111334114.

Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function

Todd Schoborg, Mariano Labrador

Cell Mol Life Sci. 2014 Nov; 71(21): 4089–4113. Published online 2014 Jul 11. doi: 10.1007/s00018-014-1672-6

PMCID:: PMC11113341

Abstract Article PDF–887K

Select item 209959715.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects

Pär G. Engström, Shannan J. Ho Sui, Øyvind Drivenes, Thomas S. Becker, Boris Lenhard

Genome Res. 2007 Dec; 17(12): 1898–1908. doi: 10.1101/gr.6669607

PMCID:: PMC2099597

Abstract Article PDF–1.0M

Select item 1016747916.

Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis

Lovisa Örkenby, Signe Skog, Helen Ekman, Alessandro Gozzo, Unn Kugelberg, Rashmi Ramesh, Srivathsa Magadi, Gianluca Zambanini, Anna Nordin, Claudio Cantú, Daniel Nätt, Anita Öst

Mol Syst Biol. 2023 May; 19(5): e11148. Published online 2023 Mar 20. doi: 10.15252/msb.202211148