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Select item 102130631.

Hedgehog morphogen gradient is robust towards variations in tissue morphology in Drosophila

Giulia Pierini, Christian Dahmann

Sci Rep. 2023; 13: 8454. Published online 2023 May 25. doi: 10.1038/s41598-023-34632-8

PMCID:: PMC10213063

Abstract Article PDF–6.9M

Select item 45739132.

Co-option of an ancestral Hox-regulated network underlies a recently evolved morphological novelty

William J. Glassford, Winslow C. Johnson, Natalie R. Dall, Sarah Jacquelyn Smith, Yang Liu, Werner Boll, Markus Noll, Mark Rebeiz

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 520–531. Published online 2015 Sep 3. doi: 10.1016/j.devcel.2015.08.005

PMCID:: PMC4573913

Abstract Article PDF–2.5M

Select item 40968193.

Expression patterns of cadherin genes in Drosophila oogenesis

Jeremiah J. Zartman, Jitendra S. Kanodia, Nir Yakoby, Xenia Schafer, Colin Watson, Karin Schlichting, Christian Dahmann, Stanislav Y. Shvartsman

Gene Expr Patterns. Author manuscript; available in PMC 2014 Jul 15.

Published in final edited form as: Gene Expr Patterns. 2009 Jan; 9(1): 31–36. Published online 2008 Sep 11. doi: 10.1016/j.gep.2008.09.001

PMCID:: PMC4096819

Abstract Article PDF–848K

Select item 36004474.

Forces shaping a Hox morphogenetic gene network

Sol Sotillos, Mario Aguilar, James Castelli-Gair Hombría

Proc Natl Acad Sci U S A. 2013 Mar 12; 110(11): 4303–4308. Published online 2013 Feb 25. doi: 10.1073/pnas.1212970110

PMCID:: PMC3600447

Abstract Article PDF–2.5M

Select item 13706715.

A computational and experimental approach toward a priori identification of alternatively spliced exons

DANA L. PHILIPPS, JUNG W. PARK, BRENTON R. GRAVELEY

RNA. 2004 Dec; 10(12): 1838–1844. doi: 10.1261/rna.7136104

PMCID:: PMC1370671

Abstract Article PDF–407K

Select item 22060726.

Spatial and Temporal Control of Gene Expression in Drosophila Using the Inducible GeneSwitch GAL4 System. I. Screen for Larval Nervous System Drivers

Louise Nicholson, Gunisha K. Singh, Thomas Osterwalder, Gregg W. Roman, Ronald L. Davis, Haig Keshishian

Genetics. 2008 Jan; 178(1): 215–234. doi: 10.1534/genetics.107.081968

PMCID:: PMC2206072

Abstract Article PDF–4.7M

Select item 38927497.

Hox Targets and Cellular Functions

Ernesto Sánchez-Herrero

Scientifica (Cairo) 2013; 2013: 738257. Published online 2013 Dec 30. doi: 10.1155/2013/738257

Correction in:: Scientifica (Cairo). 2014; 2014: 529298.

PMCID:: PMC3892749

Abstract Article PDF–1.5M

Select item 44999198.

A genetic toolkit for tagging intronic MiMIC containing genes

Sonal Nagarkar-Jaiswal, Steven Z DeLuca, Pei-Tseng Lee, Wen-Wen Lin, Hongling Pan, Zhongyuan Zuo, Jiangxing Lv, Allan C Spradling, Hugo J Bellen

eLife. 2015; 4: e08469. Published online 2015 Jun 23. doi: 10.7554/eLife.08469

PMCID:: PMC4499919

Abstract Article PDF–1.6M

Select item 33053979.

Antagonistic Regulation of Apoptosis and Differentiation by the Cut Transcription Factor Represents a Tumor-Suppressing Mechanism in Drosophila

Zongzhao Zhai, Nati Ha, Fani Papagiannouli, Anne Hamacher-Brady, Nathan Brady, Sebastian Sorge, Daniela Bezdan, Ingrid Lohmann

PLoS Genet. 2012 Mar; 8(3): e1002582. Published online 2012 Mar 15. doi: 10.1371/journal.pgen.1002582

PMCID:: PMC3305397

Abstract Article PDF–4.9M

Select item 804322910.

Comparative transcriptome analyses of the Drosophila pupal eye

Miles W DeAngelis, Joseph D Coolon, Ruth I Johnson

G3 (Bethesda) 2021 Jan; 11(1): jkaa003. Published online 2020 Nov 20. doi: 10.1093/g3journal/jkaa003

PMCID:: PMC8043229

Abstract Article PDF–1.0M

Select item 285522111.

A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function

G. Gregory Neely, Keiji Kuba, Anthony Cammarato, Kazuya Isobe, Sabine Amann, Liyong Zhang, Mitsushige Murata, Lisa Elmén, Vaijayanti Gupta, Suchir Arora, Rinku Sarangi, Debasis Dan, Susumu Fujisawa, Takako Usami, Cui-ping Xia, Alex C. Keene, Nakissa N. Alayari, Hiroyuki Yamakawa, Ulrich Elling, Christian Berger, Maria Novatchkova, Rubina Koglgruber, Keiichi Fukuda, Hiroshi Nishina, Mitsuaki Isobe, J. Andrew Pospisilik, Yumiko Imai, Arne Pfeufer, Andrew A Hicks, Peter P. Pramstaller, Sai Subramaniam, Akinori Kimura, Karen Ocorr, Rolf Bodmer, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Apr 2.

Published in final edited form as: Cell. 2010 Apr 2; 141(1): 142–153. doi: 10.1016/j.cell.2010.02.023

PMCID:: PMC2855221

Abstract Article PDF–5.3M

Select item 304044112.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 353067713.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 570780514.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900215.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 435288716.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 282505317.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Abstract Article PDF–858K

Select item 281928018.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Abstract Article PDF–1.3M

Select item 118564819.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Abstract Article PDF–273K

Select item 15118720.

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen

Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085

PMCID:: PMC151187

Abstract Article PDF–280K

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