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Select item 50097281.

Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila

Nikolay Zolotarev, Anna Fedotova, Olga Kyrchanova, Artem Bonchuk, Aleksey A. Penin, Andrey S. Lando, Irina A. Eliseeva, Ivan V. Kulakovskiy, Oksana Maksimenko, Pavel Georgiev

Nucleic Acids Res. 2016 Sep 6; 44(15): 7228–7241. Published online 2016 May 2. doi: 10.1093/nar/gkw371

PMCID:: PMC5009728

Abstract Article PDF–5.7M

Select item 71451882.

The conserved regulatory basis of mRNA contributions to the early Drosophila embryo differs between the maternal and zygotic genomes

Charles S. Omura, Susan E. Lott

PLoS Genet. 2020 Mar; 16(3): e1008645. Published online 2020 Mar 30. doi: 10.1371/journal.pgen.1008645

PMCID:: PMC7145188

Abstract Article PDF–3.2M

Select item 106480813.

The N-Terminal Part of Drosophila CP190 Is a Platform for Interaction with Multiple Architectural Proteins

Anton Golovnin, Larisa Melnikova, Valentin Babosha, Galina V. Pokholkova, Ivan Slovohotov, Anastasia Umnova, Oksana Maksimenko, Igor F. Zhimulev, Pavel Georgiev

Int J Mol Sci. 2023 Nov; 24(21): 15917. Published online 2023 Nov 2. doi: 10.3390/ijms242115917

PMCID:: PMC10648081

Abstract Article PDF–5.5M

Select item 80842974.

CTCF As an Example of DNA-Binding Transcription Factors Containing Clusters of C2H2-Type Zinc Fingers

O. G. Maksimenko, D. V. Fursenko, E. V. Belova, P. G. Georgiev

Acta Naturae. 2021 Jan-Mar; 13(1): 31–46. doi: 10.32607/actanaturae.11206

PMCID:: PMC8084297

Abstract Article PDF–773K

Select item 86865235.

Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue

Colin T. Waters, Stephen S. Gisselbrecht, Yuliya A. Sytnikova, Tiziana M. Cafarelli, David E. Hill, Martha L. Bulyk

Genome Biol. 2021; 22: 348. Published online 2021 Dec 20. doi: 10.1186/s13059-021-02574-x

PMCID:: PMC8686523

Abstract Article PDF–1.7M

Select item 58803456.

Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing

Galina V. Pokholkova, Sergei A. Demakov, Oleg V. Andreenkov, Natalia G. Andreenkova, Elena I. Volkova, Elena S. Belyaeva, Igor F. Zhimulev

PLoS One. 2018; 13(4): e0192634. Published online 2018 Apr 2. doi: 10.1371/journal.pone.0192634

PMCID:: PMC5880345

Abstract Article PDF–23M

Select item 43171637.

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

Oksana Maksimenko, Marek Bartkuhn, Viacheslav Stakhov, Martin Herold, Nickolay Zolotarev, Theresa Jox, Melanie K. Buxa, Ramona Kirsch, Artem Bonchuk, Anna Fedotova, Olga Kyrchanova, Rainer Renkawitz, Pavel Georgiev

Genome Res. 2015 Jan; 25(1): 89–99. doi: 10.1101/gr.174169.114

PMCID:: PMC4317163

Abstract Article PDF–1.2M

Select item 50940118.

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects: Insect insulator proteins

Thomas Pauli, Lucia Vedder, Daniel Dowling, Malte Petersen, Karen Meusemann, Alexander Donath, Ralph S. Peters, Lars Podsiadlowski, Christoph Mayer, Shanlin Liu, Xin Zhou, Peter Heger, Thomas Wiehe, Lars Hering, Georg Mayer, Bernhard Misof, Oliver Niehuis

BMC Genomics. 2016; 17: 861. Published online 2016 Nov 3. doi: 10.1186/s12864-016-3205-1

PMCID:: PMC5094011

Abstract Article PDF–1.0M

Select item 70217249.

In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila

Rodrigo G. Arzate-Mejía, Angel Josué Cerecedo-Castillo, Georgina Guerrero, Mayra Furlan-Magaril, Félix Recillas-Targa

Nat Commun. 2020; 11: 894. Published online 2020 Feb 14. doi: 10.1038/s41467-020-14651-z

PMCID:: PMC7021724

Abstract Article PDF–3.6M

Select item 1059042610.

3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription

Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann

Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y

PMCID:: PMC10590426

Abstract Article PDF–3.6M

Select item 383165111.

Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster

Joseph Krystel, Kasirajan Ayyanathan

Gene. Author manuscript; available in PMC 2014 Jan 10.

Published in final edited form as: Gene. 2013 Jan 10; 512(2): 10.1016/j.gene.2012.09.114. Published online 2012 Oct 17. doi: 10.1016/j.gene.2012.09.114

PMCID:: PMC3831651

Abstract Article PDF–2.9M

Select item 822829312.

Multi-Scale Organization of the Drosophila melanogaster Genome

Samantha C. Peterson, Kaylah B. Samuelson, Stacey L. Hanlon

Genes (Basel) 2021 Jun; 12(6): 817. Published online 2021 May 27. doi: 10.3390/genes12060817

PMCID:: PMC8228293

Abstract Article PDF–1.0M

Select item 910630213.

Essential role of Cp190 in physical and regulatory boundary formation

Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta

Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834

PMCID:: PMC9106302

Abstract Article PDF–8.3M

Select item 780060614.

The Functions and Mechanisms of Action of Insulators in the Genomes of Higher Eukaryotes

L. S. Melnikova, P. G. Georgiev, A. K. Golovnin

Acta Naturae. 2020 Oct-Dec; 12(4): 15–33. doi: 10.32607/actanaturae.11144

PMCID:: PMC7800606

Abstract Article PDF–5.8M

Select item 435188715.

Pervasive Variation of Transcription Factor Orthologs Contributes to Regulatory Network Evolution

Shilpa Nadimpalli, Anton V. Persikov, Mona Singh

PLoS Genet. 2015 Mar; 11(3): e1005011. Published online 2015 Mar 6. doi: 10.1371/journal.pgen.1005011

PMCID:: PMC4351887

Abstract Article PDF–2.9M

Select item 746593716.

Insights into HP1a-Chromatin Interactions

Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham

Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866

PMCID:: PMC7465937

Abstract Article PDF–2.2M

Select item 436220517.

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

Kazuhiro R Nitta, Arttu Jolma, Yimeng Yin, Ekaterina Morgunova, Teemu Kivioja, Junaid Akhtar, Korneel Hens, Jarkko Toivonen, Bart Deplancke, Eileen E M Furlong, Jussi Taipale

eLife. 2015; 4: e04837. Published online 2015 Mar 17. doi: 10.7554/eLife.04837

PMCID:: PMC4362205

Abstract Article PDF–3.7M

Select item 617725718.

Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila

Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet

eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853

PMCID:: PMC6177257

Abstract Article PDF–4.9M

Select item 648595619.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 438152320.

A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke

Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114