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Items: 1 to 20 of 25

1.
Identification of genomic regions that interact with a viable allele of the Drosophila protein tyrosine phosphatase corkscrew.
L Firth, J Manchester, J A Lorenzen, M Baron, L A Perkins
Genetics. 2000 Oct; 156(2): 733–748. doi: 10.1093/genetics/156.2.733
PMCID:
PMC1461264
SummaryPDF–853K
2.
The Intrinsically Disordered Regions of the Drosophila melanogaster Hox Protein Ultrabithorax Select Interacting Proteins Based on Partner Topology
Hao-Ching Hsiao, Kim L. Gonzalez, Daniel J. Catanese, Jr., Kristopher E. Jordy, Kathleen S. Matthews, Sarah E. Bondos
PLoS One. 2014; 9(10): e108217. Published online 2014 Oct 6. doi: 10.1371/journal.pone.0108217
PMCID:
PMC4186791
AbstractArticlePDF–1.1M
3.
P-TEFb, the Super Elongation Complex and Mediator Regulate a Subset of Non-paused Genes during Early Drosophila Embryo Development
Olle Dahlberg, Olga Shilkova, Min Tang, Per-Henrik Holmqvist, Mattias Mannervik
PLoS Genet. 2015 Feb; 11(2): e1004971. Published online 2015 Feb 13. doi: 10.1371/journal.pgen.1004971
Correction in:
PLoS Genet. 2015 Jun; 11(6): e1005319.
PMCID:
PMC4334199
AbstractArticlePDF–1.4M
4.
Ultrasensitive proteome analysis using paramagnetic bead technology
Christopher S Hughes, Sophia Foehr, David A Garfield, Eileen E Furlong, Lars M Steinmetz, Jeroen Krijgsveld
Mol Syst Biol. 2014 Oct 1; 10(10): 1–10. Published online 2014 Oct 30. doi: 10.15252/msb.20145625
PMCID:
PMC4299378
AbstractArticlePDF–1.7M
5.
Sex- and Tissue-specific Functions of Drosophila Doublesex Transcription Factor Target Genes
Emily Clough, Erin Jimenez, Yoo-Ah Kim, Cale Whitworth, Megan C. Neville, Leonie Hempel, Hania J. Pavlou, Zhen-Xia Chen, David Sturgill, Ryan Dale, Harold E. Smith, Teresa M. Przytycka, Stephen F. Goodwin, Mark Van Doren, Brian Oliver
Dev Cell. Author manuscript; available in PMC 2015 Dec 22.
Published in final edited form as: Dev Cell. 2014 Dec 22; 31(6): 761–773. doi: 10.1016/j.devcel.2014.11.021
PMCID:
PMC4275658
AbstractArticlePDF–1.6M
6.
Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis
Lovisa Örkenby, Signe Skog, Helen Ekman, Alessandro Gozzo, Unn Kugelberg, Rashmi Ramesh, Srivathsa Magadi, Gianluca Zambanini, Anna Nordin, Claudio Cantú, Daniel Nätt, Anita Öst
Mol Syst Biol. 2023 May; 19(5): e11148. Published online 2023 Mar 20. doi: 10.15252/msb.202211148
PMCID:
PMC10167479
AbstractArticlePDF–3.0M
7.
A global change in RNA polymerase II pausing during the Drosophila midblastula transition
Kai Chen, Jeff Johnston, Wanqing Shao, Samuel Meier, Cynthia Staber, Julia Zeitlinger
eLife. 2013; 2: e00861. Published online 2013 Aug 13. doi: 10.7554/eLife.00861
PMCID:
PMC3743134
AbstractArticlePDF–4.1M
8.
Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
Abbie Saunders, Leighton J. Core, Catherine Sutcliffe, John T. Lis, Hilary L. Ashe
Genes Dev. 2013 May 15; 27(10): 1146–1158. doi: 10.1101/gad.215459.113
PMCID:
PMC3672648
AbstractArticlePDF–2.1M
9.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
10.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
11.
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke
Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114
PMCID:
PMC4381523
AbstractArticlePDF–700K
12.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
13.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
14.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
15.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
16.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
17.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M
18.
Combined Evidence Annotation of Transposable Elements in Genome Sequences
Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere
PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022
PMCID:
PMC1185648
AbstractArticlePDF–273K
19.
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen
Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085
PMCID:
PMC151187
AbstractArticlePDF–280K
20.
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker
Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0084
PMCID:
PMC151186
AbstractArticlePDF–330K

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