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Items: 17

1.
A Upf3b-mutant mouse model with behavioral and neurogenesis defects
L Huang, EY Shum, SH Jones, C-H Lou, JN Chousal, H Kim, AJ Roberts, LA Jolly, J Espinoza, DM Skarbrevik, MH Phan, H Cook-Andersen, NR Swerdlow, J Gecz, MF Wilkinson
Mol Psychiatry. Author manuscript; available in PMC 2018 Sep 27.
Published in final edited form as: Mol Psychiatry. 2018 Aug; 23(8): 1773–1786. Published online 2017 Sep 26. doi: 10.1038/mp.2017.173
PMCID:
PMC5869067
AbstractArticlePDF–1.5M
2.
The unfolded protein response is shaped by the NMD pathway
Rachid Karam, Chih-Hong Lou, Heike Kroeger, Lulu Huang, Jonathan H Lin, Miles F Wilkinson
EMBO Rep. 2015 May; 16(5): 599–609. Published online 2015 Mar 25. doi: 10.15252/embr.201439696
PMCID:
PMC4428047
AbstractArticlePDF–649K
3.
RNA Homeostasis Governed by Cell Type-Specific and Branched Feedback Loops Acting on NMD
Lulu Huang, Chih-Hong Lou, Waikin Chan, Eleen Y. Shum, Ada Shao, Erica Stone, Rachid Karam, Hye-Won Song, Miles F. Wilkinson
Mol Cell. Author manuscript; available in PMC 2014 Dec 31.
Published in final edited form as: Mol Cell. 2011 Sep 16; 43(6): 950–961. doi: 10.1016/j.molcel.2011.06.031
PMCID:
PMC4281029
AbstractArticlePDF–2.8M
4.
Spatial expression of the nonsense-mediated mRNA decay factors UPF3A and UPF3B among mouse tissues
Xin MA, Yan LI, Chengyan CHEN, Yanmin SHEN, Hua WANG, Tangliang LI
J Zhejiang Univ Sci B. 2023 Nov 15; 24(11): 1062–1068. doi: 10.1631/jzus.B2300126
PMCID:
PMC10646394
AbstractArticlePDF–2.0M
5.
The role of the NMD factor UPF3B in olfactory sensory neurons
Kun Tan, Samantha H Jones, Blue B Lake, Jennifer N Chousal, Eleen Y Shum, Lingjuan Zhang, Song Chen, Abhishek Sohni, Shivam Pandya, Richard L Gallo, Kun Zhang, Heidi Cook-Andersen, Miles F Wilkinson
eLife. 2020; 9: e57525. Published online 2020 Aug 10. doi: 10.7554/eLife.57525
PMCID:
PMC7452722
AbstractArticlePDF–7.2M
6.
Disorders with similar clinical phenotypes reveal underlying genetic interaction: SATB2 acts as an activator of the UPF3B gene
Petcharat Leoyklang, Kanya Suphapeetiporn, Chalurmpon Srichomthong, Siraprapa Tongkobpetch, Stefanie Fietze, Heidi Dorward, Andrew R. Cullinane, William A. Gahl, Marjan Huizing, Vorasuk Shotelersuk
Hum Genet. Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: Hum Genet. 2013 Dec; 132(12): 1383–1393. Published online 2013 Aug 8. doi: 10.1007/s00439-013-1345-9
PMCID:
PMC4160176
AbstractArticlePDF–870K
7.
Nuclear mRNA Degradation Pathway(s) Are Implicated in Xist Regulation and X Chromosome Inactivation
Constance Ciaudo, Agnès Bourdet, Michel Cohen-Tannoudji, Harry C Dietz, Claire Rougeulle, Philip Avner
PLoS Genet. 2006 Jun; 2(6): e94. Published online 2006 Jun 16. doi: 10.1371/journal.pgen.0020094
PMCID:
PMC1479048
AbstractArticlePDF–592K
8.
The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay
Eleen Y. Shum, Samantha H. Jones, Ada Shao, Jennifer N. Chousal, Matthew D. Krause, Wai-Kin Chan, Chih-Hong Lou, Josh L. Espinoza, Hye-Won Song, Mimi H. Phan, Madhuvanthi Ramaiah, Lulu Huang, John R. McCarrey, Kevin J. Peterson, Dirk G. De Rooij, Heidi Cook-Andersen, Miles F. Wilkinson
Cell. Author manuscript; available in PMC 2017 Apr 7.
Published in final edited form as: Cell. 2016 Apr 7; 165(2): 382–395. Published online 2016 Mar 31. doi: 10.1016/j.cell.2016.02.046
PMCID:
PMC4826573
AbstractArticlePDF–2.6M
9.
Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray
Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko
Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127
PMCID:
PMC16833
AbstractArticlePDF–847K
10.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
11.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
12.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
13.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
14.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
15.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
17.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M

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