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Select item 53971481.

Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae

Kyle Mohler, Rebecca Mann, Tammy J. Bullwinkle, Kyle Hopkins, Lin Hwang, Noah M. Reynolds, Brandon Gassaway, Hans-Rudolf Aerni, Jesse Rinehart, Michael Polymenis, Kym Faull, Michael Ibba

Nucleic Acids Res. 2017 Apr 20; 45(7): 3985–3996. Published online 2017 Feb 7. doi: 10.1093/nar/gkx077

PMCID:: PMC5397148

Abstract Article PDF–2.7M

Select item 49570612.

Multiple Quality Control Pathways Limit Non-protein Amino Acid Use by Yeast Cytoplasmic Phenylalanyl-tRNA Synthetase

Adil Moghal, Lin Hwang, Kym Faull, Michael Ibba

J Biol Chem. 2016 Jul 22; 291(30): 15796–15805. Published online 2016 May 19. doi: 10.1074/jbc.M116.726828

PMCID:: PMC4957061

Abstract Article PDF–801K

Select item 21439053.

Expansion of the genetic code: site-directed p-fluoro-phenylalanine incorporation in Escherichia coli.

R. Furter

Protein Sci. 1998 Feb; 7(2): 419–426. doi: 10.1002/pro.5560070223

PMCID:: PMC2143905

Summary PDF–860K

Select item 61037234.

Aminoacyl-tRNA quality control is required for efficient activation of the TOR pathway regulator Gln3p

Kyle Mohler, Rebecca Mann, Amanda Kyle, Noah Reynolds, Michael Ibba

RNA Biol. 2018; 15(4-5): 594–603. Published online 2017 Oct 6. doi: 10.1080/15476286.2017.1379635

PMCID:: PMC6103723

Abstract Article PDF–1.2M

Select item 4325375.

Phenylalanyl-tRNA synthetase from baker's yeast: role of 3'-terminal adenosine of tRNA-Phe in enzyme-substrate interaction studied with 3'-modified tRNA-Phe species.

F Von Der Haar, E Gaertner

Proc Natl Acad Sci U S A. 1975 Apr; 72(4): 1378–1382. doi: 10.1073/pnas.72.4.1378

PMCID:: PMC432537

Summary Page Browse PDF–952K

Select item 58929436.

Lack of 2'-O-methylation in the tRNA anticodon loop of two phylogenetically distant yeast species activates the general amino acid control pathway

Lu Han, Michael P. Guy, Yoshiko Kon, Eric M. Phizicky

PLoS Genet. 2018 Mar; 14(3): e1007288. Published online 2018 Mar 29. doi: 10.1371/journal.pgen.1007288

PMCID:: PMC5892943

Abstract Article PDF–6.6M

Select item 86321347.

Comprehensive characterization of mRNAs associated with yeast cytosolic aminoacyl-tRNA synthetases

Shahar Garin, Ofri Levi, Megan E. Forrest, Anthony Antonellis, Yoav S. Arava

RNA Biol. 2021; 18(12): 2605–2616. Published online 2021 Jun 10. doi: 10.1080/15476286.2021.1935116

PMCID:: PMC8632134

Abstract Article PDF–3.3M

Select item 28247538.

Proteasome Nuclear Activity Affects Chromosome Stability by Controlling the Turnover of Mms22, a Protein Important for DNA Repair

Shay Ben-Aroya, Neta Agmon, Karen Yuen, Teresa Kwok, Kirk McManus, Martin Kupiec, Philip Hieter

PLoS Genet. 2010 Feb; 6(2): e1000852. Published online 2010 Feb 19. doi: 10.1371/journal.pgen.1000852

PMCID:: PMC2824753

Abstract Article PDF–999K

Select item 82850619.

Phosphorylation of Pal2 by the protein kinases Kin1 and Kin2 modulates HAC1 mRNA splicing in the unfolded protein response in yeast

Chandrima Ghosh, Jagadeesh Kumar Uppala, Leena Sathe, Charlotte I. Hammond, Ashish Anshu, P Raj Pokkuluri, Benjamin E. Turk, Madhusudan Dey

Sci Signal. Author manuscript; available in PMC 2021 Nov 25.

Published in final edited form as: Sci Signal. 2021 May 25; 14(684): eaaz4401. Published online 2021 May 25. doi: 10.1126/scisignal.aaz4401

PMCID:: PMC8285061

Abstract Article PDF–2.2M

Select item 556293710.

Exploring Genetic Suppression Interactions on a Global Scale

Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone

Science. Author manuscript; available in PMC 2017 Aug 19.

Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839

PMCID:: PMC5562937

Abstract Article PDF–2.5M

Select item 551937511.

Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae

Fernando A. Gonzales-Zubiate, Ellen K. Okuda, Julia P. C. Da Cunha, Carla Columbano Oliveira

J Biol Chem. 2017 Jul 21; 292(29): 12267–12284. Published online 2017 May 24. doi: 10.1074/jbc.M116.772376

PMCID:: PMC5519375

Abstract Article PDF–3.2M

Select item 857106312.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 496353713.

Asymmetric Inheritance of Aggregated Proteins and Age Reset in Yeast Are Regulated by Vac17-Dependent Vacuolar Functions

Sandra Malmgren Hill, Xinxin Hao, Johan Grönvall, Stephanie Spikings-Nordby, Per O. Widlund, Triana Amen, Anna Jörhov, Rebecca Josefson, Daniel Kaganovich, Beidong Liu, Thomas Nyström

Cell Rep. 2016 Jul 19; 16(3): 826–838. Published online 2016 Jul 19. doi: 10.1016/j.celrep.2016.06.016

PMCID:: PMC4963537

Abstract Article

Select item 414980414.

Exploring the Yeast Acetylome Using Functional Genomics

Supipi Kaluarachchi Duffy, Helena Friesen, Anastasia Baryshnikova, Jean-Philippe Lambert, Yolanda T. Chong, Daniel Figeys, Brenda Andrews

Cell. Author manuscript; available in PMC 2014 Aug 30.

Published in final edited form as: Cell. 2012 May 11; 149(4): 936–948. doi: 10.1016/j.cell.2012.02.064

PMCID:: PMC4149804

Abstract Article PDF–2.1M

Select item 1051470015.

Xrn1 biochemically associates with eisosome proteins after the post diauxic shift in yeast

Baptiste Courtin, Abdelkader Namane, Maite Gomard, Laura Meyer, Alain Jacquier, Micheline Fromont-Racine

MicroPubl Biol. 2023; 2023: 10.17912/micropub.biology.000926. Published online 2023 Sep 7. doi: 10.17912/micropub.biology.000926

PMCID:: PMC10514700

Abstract Article PDF–1.7M

Select item 597222816.

A Mad2-Mediated Translational Regulatory Mechanism Promoting S-Phase Cyclin Synthesis Controls Origin Firing and Survival to Replication Stress

Sophie Gay, Daniele Piccini, Christopher Bruhn, Sara Ricciardi, Paolo Soffientini, Walter Carotenuto, Stefano Biffo, Marco Foiani

Mol Cell. 2018 May 17; 70(4): 628–638.e5. doi: 10.1016/j.molcel.2018.04.020

PMCID:: PMC5972228

Abstract Article

Select item 289711417.

Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy

Batool Ossareh-Nazari, Mélanie Bonizec, Mickael Cohen, Svetlana Dokudovskaya, François Delalande, Christine Schaeffer, Alain Van Dorsselaer, Catherine Dargemont

EMBO Rep. 2010 Jul; 11(7): 548–554. Published online 2010 May 28. doi: 10.1038/embor.2010.74

PMCID:: PMC2897114

Abstract Article PDF–597K

Select item 481371318.

Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components

Mahadevan Lakshminarasimhan, Gina Boanca, Charles A. S. Banks, Gaye L. Hattem, Ana E. Gabriel, Brad D. Groppe, Christine Smoyer, Kate E. Malanowski, Allison Peak, Laurence Florens, Michael P. Washburn

Mol Cell Proteomics. 2016 Mar; 15(3): 960–974. Published online 2016 Feb 1. doi: 10.1074/mcp.M115.053165

PMCID:: PMC4813713

Abstract Article PDF–1.2M

Select item 668908619.

The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range

Hannah Girstmair, Franziska Tippel, Abraham Lopez, Katarzyna Tych, Frank Stein, Per Haberkant, Philipp Werner Norbert Schmid, Dominic Helm, Matthias Rief, Michael Sattler, Johannes Buchner

Nat Commun. 2019; 10: 3626. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11518-w

PMCID:: PMC6689086

Abstract Article PDF–2.3M

Select item 253319020.

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

Cortnie Guerrero, Tijana Milenković, Nataša Pržulj, Peter Kaiser, Lan Huang

Proc Natl Acad Sci U S A. 2008 Sep 9; 105(36): 13333–13338. Published online 2008 Aug 29. doi: 10.1073/pnas.0801870105

PMCID:: PMC2533190

Abstract Article PDF–613K

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